Guide to the Human Genome
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Name: SLC30A8 Sequence: fasta or formatted (369aa) NCBI GI: 64762489
Description:

solute carrier family 30 member 8

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         35           2
 C cysteine            3.3         12           1
 D aspartate           4.1         15           1
 E glutamate           5.4         20           2
 F phenylalanine       4.1         15           1
 G glycine             4.1         15           2
 H histidine           3.5         13           1
 I isoleucine          7.6         28           2
 K lysine              4.9         18           1
 L leucine            12.5         46           2
 M methionine          2.4          9           1
 N asparagine          2.2          8           1
 P proline             3.5         13           2
 Q glutamine           3.3         12           2
 R arginine            3.0         11           2
 S serine              9.5         35           2
 T threonine           4.3         16           1
 V valine              8.7         32           2
 W tryptophan          1.4          5           1
 Y tyrosine            3.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 30 member 8 
SLC30A2               0.465   solute carrier family 30, member 2 isoform 1 
SLC30A3               0.392   solute carrier family 30 (zinc transporter), member ...
SLC30A2               0.336   solute carrier family 30, member 2 isoform 2 
SLC30A4               0.316   solute carrier family 30 (zinc transporter), member ...
SLC30A5               0.091   solute carrier family 30 (zinc transporter), member ...
SLC30A10              0.091   solute carrier family 30 (zinc transporter), member ...
SLC30A7               0.059   zinc transporter like 2 
SLC30A7               0.059   zinc transporter like 2 
SLC30A1               0.058   solute carrier family 30 (zinc transporter), member ...
SLC30A6               0.030   solute carrier family 30 (zinc transporter), member ...
LOC728528             0.027   PREDICTED: similar to hCG1985805 
LOC728528             0.027   PREDICTED: similar to hCG1985805 
LOC728528             0.027   PREDICTED: similar to hCG1985805 
WHSC1L1               0.010   WHSC1L1 protein isoform long 
FAM179A               0.008   hypothetical protein LOC165186 
LOC731220             0.007   hypothetical protein LOC731220 
NKTR                  0.007   natural killer-tumor recognition sequence 
OR52D1                0.007   olfactory receptor, family 52, subfamily D, member 1...
MED24                 0.006   mediator complex subunit 24 isoform 2 
MED24                 0.006   mediator complex subunit 24 isoform 1 
TFIP11                0.006   tuftelin interacting protein 11 
TFIP11                0.006   tuftelin interacting protein 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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