Guide to the Human Genome
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Name: SLC30A5 Sequence: fasta or formatted (765aa) NCBI GI: 20070323
Description:

solute carrier family 30 (zinc transporter), member 5 isoform 1

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [118aa] solute carrier family 30 (zinc transporter), member 5 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         52           2
 C cysteine            2.1         16           2
 D aspartate           3.8         29           2
 E glutamate           3.8         29           2
 F phenylalanine       7.3         56           2
 G glycine             8.6         66           5
 H histidine           5.1         39           2
 I isoleucine          8.0         61           2
 K lysine              4.6         35           1
 L leucine            12.5         96           3
 M methionine          3.0         23           1
 N asparagine          1.7         13           2
 P proline             3.0         23           2
 Q glutamine           2.9         22           2
 R arginine            2.5         19           1
 S serine              8.9         68           2
 T threonine           4.4         34           2
 V valine              7.7         59           3
 W tryptophan          1.0          8           1
 Y tyrosine            2.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 30 (zinc transporter), member ... 
SLC30A7               0.185   zinc transporter like 2 
SLC30A7               0.185   zinc transporter like 2 
SLC30A5               0.107   solute carrier family 30 (zinc transporter), member ...
SLC30A1               0.066   solute carrier family 30 (zinc transporter), member ...
SLC30A4               0.059   solute carrier family 30 (zinc transporter), member ...
SLC30A6               0.055   solute carrier family 30 (zinc transporter), member ...
SLC30A2               0.050   solute carrier family 30, member 2 isoform 1 
SLC30A10              0.045   solute carrier family 30 (zinc transporter), member ...
SLC30A8               0.043   solute carrier family 30 member 8 
SLC30A3               0.038   solute carrier family 30 (zinc transporter), member ...
SLC30A2               0.026   solute carrier family 30, member 2 isoform 2 
LOC728528             0.023   PREDICTED: similar to hCG1985805 
LOC728528             0.023   PREDICTED: similar to hCG1985805 
LOC728528             0.023   PREDICTED: similar to hCG1985805 
SLC39A7               0.017   solute carrier family 39, member 7 
SLC39A7               0.017   solute carrier family 39, member 7 
LUZP4                 0.011   leucine zipper protein 4 
HRG                   0.011   histidine-rich glycoprotein precursor 
IQSEC2                0.008   IQ motif and Sec7 domain 2 isoform1 
ATP6                  0.007   ATP synthase F0 subunit 6 
MAFA                  0.007   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
SLC39A6               0.007   solute carrier family 39 (zinc transporter), member...
KNG1                  0.007   kininogen 1 isoform 1 
OTX1                  0.007   orthodenticle homeobox 1 
FUSSEL18              0.007   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.007   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.007   PREDICTED: functional smad suppressing element 18 [...
ATP6                  0.006   ATP synthase F0 subunit 6 
HRNR                  0.006   hornerin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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