Guide to the Human Genome
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Name: SLC30A6 Sequence: fasta or formatted (461aa) NCBI GI: 21687224
Description:

solute carrier family 30 (zinc transporter), member 6

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         30           2
 C cysteine            1.3          6           1
 D aspartate           2.8         13           2
 E glutamate           3.3         15           1
 F phenylalanine       6.5         30           2
 G glycine             6.9         32           1
 H histidine           2.4         11           2
 I isoleucine          6.3         29           2
 K lysine              2.6         12           1
 L leucine            13.2         61           2
 M methionine          2.6         12           1
 N asparagine          4.8         22           2
 P proline             6.3         29           3
 Q glutamine           2.6         12           1
 R arginine            5.4         25           2
 S serine              7.6         35           2
 T threonine           7.8         36           2
 V valine              6.9         32           1
 W tryptophan          1.3          6           1
 Y tyrosine            2.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 30 (zinc transporter), member ... 
SLC30A5               0.092   solute carrier family 30 (zinc transporter), member ...
SLC30A7               0.079   zinc transporter like 2 
SLC30A7               0.079   zinc transporter like 2 
SLC30A3               0.047   solute carrier family 30 (zinc transporter), member ...
SLC30A4               0.038   solute carrier family 30 (zinc transporter), member ...
SLC30A2               0.037   solute carrier family 30, member 2 isoform 1 
SLC30A8               0.023   solute carrier family 30 member 8 
SLC30A1               0.020   solute carrier family 30 (zinc transporter), member ...
SLC30A10              0.019   solute carrier family 30 (zinc transporter), member ...
SLC30A2               0.013   solute carrier family 30, member 2 isoform 2 
NFRKB                 0.011   nuclear factor related to kappaB binding protein is...
NFRKB                 0.011   nuclear factor related to kappaB binding protein iso...
RPL31                 0.011   ribosomal protein L31 isoform 3 
RPL31                 0.010   ribosomal protein L31 isoform 1 
RPL31                 0.010   ribosomal protein L31 isoform 2 
KIAA1486              0.007   hypothetical protein LOC57624 
LOC100293817          0.007   PREDICTED: similar to hCG1811893 
MUC12                 0.006   PREDICTED: mucin 12 
LOC100133714          0.006   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.006   PREDICTED: mucin 12 
NBEAL2                0.006   neurobeachin-like 2 
C6orf57               0.006   hypothetical protein LOC135154 
GLIS1                 0.006   GLIS family zinc finger 1 
COL27A1               0.006   collagen, type XXVII, alpha 1 
SLC26A8               0.004   solute carrier family 26, member 8 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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