Guide to the Human Genome
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Name: LGI2 Sequence: fasta or formatted (545aa) NCBI GI: 21313638
Description:

leucine-rich repeat LGI family, member 2

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         27           2
 C cysteine            2.2         12           1
 D aspartate           7.2         39           2
 E glutamate           4.4         24           1
 F phenylalanine       7.0         38           3
 G glycine             4.6         25           2
 H histidine           2.2         12           1
 I isoleucine          7.0         38           2
 K lysine              6.2         34           2
 L leucine            10.3         56           6
 M methionine          1.8         10           1
 N asparagine          4.0         22           2
 P proline             3.1         17           2
 Q glutamine           4.0         22           1
 R arginine            4.8         26           2
 S serine             10.1         55           2
 T threonine           4.8         26           3
 V valine              6.4         35           3
 W tryptophan          1.8         10           1
 Y tyrosine            3.1         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine-rich repeat LGI family, member 2 
LGI1                  0.564   leucine-rich, glioma inactivated 1 precursor 
LGI3                  0.525   leucine-rich repeat LGI family, member 3 
LGI4                  0.380   leucine-rich repeat LGI family, member 4 
RTN4RL2               0.071   reticulon 4 receptor-like 2 
SLIT3                 0.068   slit homolog 3 
SLIT1                 0.066   slit homolog 1 
SLIT2                 0.066   slit homolog 2 
LRRC4                 0.060   leucine rich repeat containing 4 
GPR125                0.060   G protein-coupled receptor 125 
LRIG3                 0.057   leucine-rich repeats and immunoglobulin-like domains...
LRIG3                 0.057   leucine-rich repeats and immunoglobulin-like domain...
PXDN                  0.057   peroxidasin 
LRIG1                 0.057   leucine-rich repeats and immunoglobulin-like domains...
FLRT1                 0.056   fibronectin leucine rich transmembrane protein 1 [Ho...
LRIG2                 0.054   leucine-rich repeats and immunoglobulin-like domains ...
PXDNL                 0.053   peroxidasin homolog-like 
LRRC4C                0.052   netrin-G1 ligand 
SLITRK6               0.052   slit and trk like 6 
FLRT2                 0.052   fibronectin leucine rich transmembrane protein 2 [Hom...
SLITRK5               0.050   SLIT and NTRK-like family, member 5 
FLRT3                 0.050   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.050   fibronectin leucine rich transmembrane protein 3 prec...
RTN4RL1               0.050   reticulon 4 receptor-like 1 
RTN4R                 0.049   reticulon 4 receptor precursor 
LRRC4B                0.049   leucine rich repeat containing 4B 
VASN                  0.048   slit-like 2 
LINGO2                0.047   leucine rich repeat and Ig domain containing 2 [Homo...
LRRC24                0.046   leucine rich repeat containing 24 
ELFN2                 0.046   leucine rich repeat containing 62 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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