Guide to the Human Genome
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Name: SLITRK5 Sequence: fasta or formatted (958aa) NCBI GI: 40217823
Description:

SLIT and NTRK-like family, member 5

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         40           2
 C cysteine            2.3         22           2
 D aspartate           4.6         44           2
 E glutamate           5.5         53           3
 F phenylalanine       2.9         28           1
 G glycine             5.5         53           5
 H histidine           3.3         32           2
 I isoleucine          4.0         38           2
 K lysine              4.0         38           2
 L leucine            13.8        132           3
 M methionine          1.5         14           1
 N asparagine          5.6         54           3
 P proline             8.4         80           5
 Q glutamine           4.7         45           5
 R arginine            5.3         51           2
 S serine              8.5         81           3
 T threonine           4.8         46           2
 V valine              6.5         62           3
 W tryptophan          0.5          5           1
 Y tyrosine            4.2         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SLIT and NTRK-like family, member 5 
SLITRK2               0.401   SLIT and NTRK-like family, member 2 
SLITRK2               0.401   SLIT and NTRK-like family, member 2 
SLITRK2               0.401   SLIT and NTRK-like family, member 2 
SLITRK2               0.401   SLIT and NTRK-like family, member 2 
SLITRK2               0.401   SLIT and NTRK-like family, member 2 
SLITRK2               0.401   SLIT and NTRK-like family, member 2 
SLITRK2               0.401   SLIT and NTRK-like family, member 2 
SLITRK2               0.401   SLIT and NTRK-like family, member 2 
SLITRK2               0.401   SLIT and NTRK-like family, member 2 
SLITRK3               0.346   slit and trk like 3 protein 
SLITRK4               0.339   slit and trk like 4 protein 
SLITRK6               0.311   slit and trk like 6 
SLITRK1               0.256   slit and trk like 1 protein 
SLIT1                 0.048   slit homolog 1 
SLIT2                 0.046   slit homolog 2 
SLIT3                 0.045   slit homolog 3 
LRRC15                0.042   leucine rich repeat containing 15 isoform a 
LRRC15                0.042   leucine rich repeat containing 15 isoform b 
PXDN                  0.039   peroxidasin 
LRRC70                0.039   synleurin 
FLRT3                 0.038   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.038   fibronectin leucine rich transmembrane protein 3 prec...
IGSF10                0.038   immunoglobulin superfamily, member 10 
FLRT1                 0.037   fibronectin leucine rich transmembrane protein 1 [Ho...
LRTM1                 0.037   leucine-rich repeats and transmembrane domains 1 [Ho...
LRFN5                 0.036   leucine rich repeat and fibronectin type III domain ...
RTN4R                 0.036   reticulon 4 receptor precursor 
LRFN3                 0.035   leucine rich repeat and fibronectin type III domain ...
LRTM2                 0.034   leucine-rich repeats and transmembrane domains 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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