Guide to the Human Genome
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Name: SLITRK6 Sequence: fasta or formatted (841aa) NCBI GI: 40217825
Description:

slit and trk like 6

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         28           2
 C cysteine            2.1         18           1
 D aspartate           4.0         34           2
 E glutamate           6.9         58           5
 F phenylalanine       3.1         26           2
 G glycine             4.5         38           1
 H histidine           3.8         32           2
 I isoleucine          6.1         51           2
 K lysine              5.7         48           3
 L leucine            15.5        130           2
 M methionine          2.6         22           1
 N asparagine          6.8         57           3
 P proline             6.4         54           3
 Q glutamine           4.2         35           2
 R arginine            3.3         28           4
 S serine              7.7         65           2
 T threonine           6.2         52           3
 V valine              4.3         36           2
 W tryptophan          0.6          5           1
 Y tyrosine            2.9         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   slit and trk like 6 
SLITRK5               0.358   SLIT and NTRK-like family, member 5 
SLITRK4               0.354   slit and trk like 4 protein 
SLITRK2               0.335   SLIT and NTRK-like family, member 2 
SLITRK2               0.335   SLIT and NTRK-like family, member 2 
SLITRK2               0.335   SLIT and NTRK-like family, member 2 
SLITRK2               0.335   SLIT and NTRK-like family, member 2 
SLITRK2               0.335   SLIT and NTRK-like family, member 2 
SLITRK2               0.335   SLIT and NTRK-like family, member 2 
SLITRK2               0.335   SLIT and NTRK-like family, member 2 
SLITRK2               0.335   SLIT and NTRK-like family, member 2 
SLITRK2               0.335   SLIT and NTRK-like family, member 2 
SLITRK3               0.301   slit and trk like 3 protein 
SLITRK1               0.284   slit and trk like 1 protein 
SLIT3                 0.077   slit homolog 3 
SLIT1                 0.075   slit homolog 1 
SLIT2                 0.064   slit homolog 2 
CHADL                 0.061   chondroadherin-like 
RTN4RL2               0.047   reticulon 4 receptor-like 2 
LRTM1                 0.046   leucine-rich repeats and transmembrane domains 1 [Ho...
LRRC15                0.046   leucine rich repeat containing 15 isoform a 
LRRC15                0.046   leucine rich repeat containing 15 isoform b 
FLRT3                 0.045   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.045   fibronectin leucine rich transmembrane protein 3 prec...
LRRC70                0.045   synleurin 
CPN2                  0.045   carboxypeptidase N, polypeptide 2, 83kD 
IGSF10                0.044   immunoglobulin superfamily, member 10 
LRRC24                0.044   leucine rich repeat containing 24 
FLRT2                 0.043   fibronectin leucine rich transmembrane protein 2 [Hom...
LRFN5                 0.042   leucine rich repeat and fibronectin type III domain ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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