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Search of human proteins with 21264339
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21264339 SRY (sex determining region Y)-box 12 [Homo
sapiens]
(315 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 658 0.0
gi|4507161 SRY-box 11 [Homo sapiens] 223 1e-58
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 189 2e-48
gi|5902106 SRY-box 15 [Homo sapiens] 128 6e-30
gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens] 127 1e-29
gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens] 126 3e-29
gi|5902108 SRY-box 21 [Homo sapiens] 125 4e-29
gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens] 124 1e-28
gi|28195386 sex-determining region Y-box 2 [Homo sapiens] 123 2e-28
gi|4759162 SRY-box 14 [Homo sapiens] 123 2e-28
gi|4557853 transcription factor SOX9 [Homo sapiens] 120 2e-27
gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens] 120 2e-27
gi|13899269 SRY-box 7 [Homo sapiens] 119 3e-27
gi|8924248 SRY-box 18 [Homo sapiens] 115 5e-26
gi|11967991 SRY-box 17 [Homo sapiens] 115 7e-26
gi|41406089 SRY-box 13 [Homo sapiens] 105 7e-23
gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo... 103 3e-22
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo... 103 3e-22
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo... 103 3e-22
gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Hom... 100 2e-21
gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Hom... 100 2e-21
gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo... 100 2e-21
gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo... 100 2e-21
gi|4507225 sex determining region Y [Homo sapiens] 99 5e-21
gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo... 82 5e-16
gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Hom... 82 5e-16
gi|112421108 capicua homolog [Homo sapiens] 71 1e-12
gi|71143137 high-mobility group box 3 [Homo sapiens] 60 3e-09
gi|226371764 transcription factor 7-like 2 isoform 1 [Homo sapiens] 59 6e-09
gi|169168462 PREDICTED: similar to high mobility group box 3 [Ho... 58 1e-08
>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
Length = 315
Score = 658 bits (1698), Expect = 0.0
Identities = 315/315 (100%), Positives = 315/315 (100%)
Query: 1 MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMD 60
MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMD
Sbjct: 1 MVQQRGARAKRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMD 60
Query: 61 QWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPA 120
QWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPA
Sbjct: 61 QWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPA 120
Query: 121 KARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVE 180
KARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVE
Sbjct: 121 KARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVE 180
Query: 181 TPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEG 240
TPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEG
Sbjct: 181 TPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEG 240
Query: 241 EEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDLQPPSGTSHFEFPDYCTPEVTEMIA 300
EEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDLQPPSGTSHFEFPDYCTPEVTEMIA
Sbjct: 241 EEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDLQPPSGTSHFEFPDYCTPEVTEMIA 300
Query: 301 GDWRPSSIADLVFTY 315
GDWRPSSIADLVFTY
Sbjct: 301 GDWRPSSIADLVFTY 315
>gi|4507161 SRY-box 11 [Homo sapiens]
Length = 441
Score = 223 bits (569), Expect = 1e-58
Identities = 156/405 (38%), Positives = 195/405 (48%), Gaps = 119/405 (29%)
Query: 29 EPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIP 88
+P WCKT SGHIKRPMNAFMVWS+ ERRKIM+Q PDMHNAEISKRLG+RW++L+DSEKIP
Sbjct: 38 DPDWCKTASGHIKRPMNAFMVWSKIERRKIMEQSPDMHNAEISKRLGKRWKMLKDSEKIP 97
Query: 89 FVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPP---------------GGSGGG 133
F+REAERLRLKHMADYPDYKYRPRKK K P+ A+P GG GG
Sbjct: 98 FIREAERLRLKHMADYPDYKYRPRKKPKMDPS-AKPSASQSPEKSAAGGGGGSAGGGAGG 156
Query: 134 SRLKPGP-------QLPGRGGRRAAGGPL-----------------------GGGAAAP- 162
++ G + P G +A G GGG A
Sbjct: 157 AKTSKGSSKKCGKLKAPAAAGAKAGAGKAAQSGDYGGAGDDYVLGSLRVSGSGGGGAGKT 216
Query: 163 -------EDDDEDDDEELLEVR----------------LVETPGRELWRM--------VP 191
EDDD+DDD++ L+++ L++ PG++ ++ VP
Sbjct: 217 VKCVFLDEDDDDDDDDDELQLQIKQEPDEEDEEPPHQQLLQPPGQQPSQLLRRYNVAKVP 276
Query: 192 AGRAARGQAE-----------RAQGPSGEGAA------------------AAAAASPTPS 222
A AE RA SG G A A SP S
Sbjct: 277 ASPTLSSSAESPEGASLYDEVRAGATSGAGGGSRLYYSFKNITKQHPPPLAQPALSPASS 336
Query: 223 EDEEPEEEEEEAAAA-EEGEEETVASGEESLGFLS--------RLPPGPAG--LDCSALD 271
+++ GE+ + SL F +L G A L S +D
Sbjct: 337 RSVSTSSSSSSGSSSGSSGEDADDLMFDLSLNFSQSAHSASEQQLGGGAAAGNLSLSLVD 396
Query: 272 RDPD-LQPPSGTSHFEFPDYCTPEVTEMIAGDWRPSSIADLVFTY 315
+D D S SHFEFPDYCTPE++EMIAGDW ++ +DLVFTY
Sbjct: 397 KDLDSFSEGSLGSHFEFPDYCTPELSEMIAGDWLEANFSDLVFTY 441
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 189 bits (481), Expect = 2e-48
Identities = 112/219 (51%), Positives = 134/219 (61%), Gaps = 23/219 (10%)
Query: 16 PPPGPGPAEEG-AREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRL 74
P PG + G A +P WCKTPSGHIKRPMNAFMVWSQ ERRKIM+Q PDMHNAEISKRL
Sbjct: 34 PTPGSTASTGGKADDPSWCKTPSGHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRL 93
Query: 75 GRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKK--------SKGAPAKARPRP 126
G+RW+LL+DS+KIPF+REAERLRLKHMADYPDYKYRPRKK S A A ++P
Sbjct: 94 GKRWKLLKDSDKIPFIREAERLRLKHMADYPDYKYRPRKKVKSGNANSSSSAAASSKPGE 153
Query: 127 P----GGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVRLVETP 182
GGSGGG G G G A GG GGGA+ + + ++ ++
Sbjct: 154 KGDKVGGSGGGGHGGGG----GGGSSNAGGG--GGGASGGGANSKPAQKKSCGSKVAGGA 207
Query: 183 G----RELWRMVPAGRAARGQAERAQGPSGEGAAAAAAA 217
G + +++ AG G+A A S A AAA
Sbjct: 208 GGGVSKPHAKLILAGGGGGGKAAAAAAASFAAEQAGAAA 246
Score = 84.0 bits (206), Expect = 2e-16
Identities = 71/231 (30%), Positives = 95/231 (41%), Gaps = 40/231 (17%)
Query: 109 YRPRKKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGR--------GGRRAAGGPLGGGAA 160
Y+ R S A A + S + PG L + GG + P+GG A
Sbjct: 260 YKARTPSASASASS-----AASASAALAAPGKHLAEKKVKRVYLFGGLGTSSSPVGGVGA 314
Query: 161 APEDDDEDDDEELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSG-------EGAAA 213
+ D + L E G P + G++ A P+ G A+
Sbjct: 315 GADPSDP--------LGLYEEEGAGC---SPDAPSLSGRSSAASSPAAGRSPADHRGYAS 363
Query: 214 AAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLPPGP--------AGL 265
AASP PS + ++ + +S +E L L P +
Sbjct: 364 LRAASPAPSSAPSHASSSASSHSSSSSSSGSSSSDDEFEDDLLDLNPSSNFESMSLGSFS 423
Query: 266 DCSALDRDPDLQ-PPSGTSHFEFPDYCTPEVTEMIAGDWRPSSIADLVFTY 315
SALDRD D P SHFEFPDYCTPEV+EMI+GDW SSI++LVFTY
Sbjct: 424 SSSALDRDLDFNFEPGSGSHFEFPDYCTPEVSEMISGDWLESSISNLVFTY 474
>gi|5902106 SRY-box 15 [Homo sapiens]
Length = 233
Score = 128 bits (322), Expect = 6e-30
Identities = 72/140 (51%), Positives = 88/140 (62%), Gaps = 21/140 (15%)
Query: 21 GPAE-EGAREPGWCKT-PSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRW 78
GP E EGA P T P +KRPMNAFMVWS +RR++ Q P MHN+EISKRLG +W
Sbjct: 28 GPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQW 87
Query: 79 QLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGGSGGGSRLKP 138
+LL + EK PFV EA+RLR +H+ DYPDYKYRPR+K+K + A
Sbjct: 88 KLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKSSGA------------------ 129
Query: 139 GPQLPGRG-GRRAAGGPLGG 157
GP G+G G A+GGPL G
Sbjct: 130 GPSRCGQGRGNLASGGPLWG 149
>gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
Length = 466
Score = 127 bits (319), Expect = 1e-29
Identities = 60/126 (47%), Positives = 83/126 (65%), Gaps = 10/126 (7%)
Query: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
H+KRPMNAFMVW+Q RRK+ DQ+P +HNAE+SK LG+ W+LL +S+K PF+ EAERLR+
Sbjct: 103 HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESDKRPFIEEAERLRM 162
Query: 99 KHMADYPDYKYRPRKKSKGAPAKARPRPPGG---SGGGSRLKP-------GPQLPGRGGR 148
+H D+PDYKY+PR++ G A+ PGG GG + ++ + PG G
Sbjct: 163 QHKKDHPDYKYQPRRRKNGKAAQGEAECPGGEAEQGGTAAIQAHYKSAHLDHRHPGEGSP 222
Query: 149 RAAGGP 154
+ G P
Sbjct: 223 MSDGNP 228
Score = 29.3 bits (64), Expect = 4.8
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 118 APAKARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDDEDDDEELLEVR 177
+P A P G GGGS G RA+ GP G E D + D++ V
Sbjct: 24 SPGSAPSLGPDGGGGGS------------GLRASPGPGELGKVKKEQQDGEADDDKFPVC 71
Query: 178 LVETPGREL----WRMVP 191
+ E + L W +VP
Sbjct: 72 IREAVSQVLSGYDWTLVP 89
Score = 28.5 bits (62), Expect = 8.1
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 169 DDEELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPE 228
++++L EV L G E R + G A + GP G G + ASP P E + +
Sbjct: 3 EEQDLSEVELSPV-GSEEPRCLSPGSAP------SLGPDGGGGGSGLRASPGPGELGKVK 55
Query: 229 EEEEEAAAAEE 239
+E+++ A ++
Sbjct: 56 KEQQDGEADDD 66
>gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]
Length = 446
Score = 126 bits (316), Expect = 3e-29
Identities = 105/337 (31%), Positives = 141/337 (41%), Gaps = 71/337 (21%)
Query: 8 RAKRDGGPPPPG--------------PGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQH 53
+A GGP PG G G G T +KRPMNAFMVWS+
Sbjct: 93 QAAGTGGPAAPGGAGKSSANAAGGANSGGGSSGGASGGGGGTDQDRVKRPMNAFMVWSRG 152
Query: 54 ERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRK 113
+RRK+ + P MHN+EISKRLG W+LL D+EK PF+ EA+RLR HM +YPDYKYRPR+
Sbjct: 153 QRRKMALENPKMHNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRR 212
Query: 114 KSKGAPAKARPRPPGGSGGGSRLKPG---PQLPGRGGRRAAGGPLG-------------- 156
K+K K + P G L PG AA P+G
Sbjct: 213 KTKTLLKKDKYSLPSG-----LLPPGAAAAAAAAAAAAAAASSPVGVGQRLDTYTHVNGW 267
Query: 157 ------------GGAAAPEDDDEDDDEELLEVRLVETPGRELWRMVPAG-RAARGQAERA 203
G A P L + + G + M+P G ++ A A
Sbjct: 268 ANGAYSLVQEQLGYAQPPSMSSPPPPPALPPMHRYDMAGLQYSPMMPPGAQSYMNVAAAA 327
Query: 204 QGPSGEGAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLPPGPA 263
SG G A +A + AAAA G++ A+ + L GP
Sbjct: 328 AAASGYGGMAPSATA---------------AAAAAYGQQPATAAAAAAAAAAMSL--GPM 370
Query: 264 GLDCSALDRDPDLQPPSGTSHFEFPDYCTPEVTEMIA 300
G S + +P PP+ SH + C ++ +MI+
Sbjct: 371 G---SVVKSEPSSPPPAIASHSQ--RACLGDLRDMIS 402
Score = 28.5 bits (62), Expect = 8.1
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 113 KKSKGAPAKAR----PRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPED 164
K G P +A P PGG+G S G G G ++GG GGG +D
Sbjct: 85 KNPVGTPTQAAGTGGPAAPGGAGKSSANAAGGANSGGG---SSGGASGGGGGTDQD 137
>gi|5902108 SRY-box 21 [Homo sapiens]
Length = 276
Score = 125 bits (315), Expect = 4e-29
Identities = 80/184 (43%), Positives = 97/184 (52%), Gaps = 25/184 (13%)
Query: 36 PSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAER 95
P H+KRPMNAFMVWS+ +RRK+ + P MHN+EISKRLG W+LL +SEK PF+ EA+R
Sbjct: 4 PVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKR 63
Query: 96 LRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGGSG-GGSRLKPGPQLPGRGGRRAAGGP 154
LR HM ++PDYKYRPR+K K K + P G GG P L G A
Sbjct: 64 LRAMHMKEHPDYKYRPRRKPKTLLKKDKFAFPVPYGLGGVADAEHPALKAGAGLHAG--- 120
Query: 155 LGGGAAAPEDDDEDDDEELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAA 214
GG PE L+ P + A AA A R P AAAA
Sbjct: 121 -AGGGLVPES-------------LLANPEK-------AAAAAAAAAARVFFPQSAAAAAA 159
Query: 215 AAAS 218
AAA+
Sbjct: 160 AAAA 163
>gi|30179903 SRY (sex determining region Y)-box 8 [Homo sapiens]
Length = 446
Score = 124 bits (310), Expect = 1e-28
Identities = 65/120 (54%), Positives = 81/120 (67%), Gaps = 9/120 (7%)
Query: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
H+KRPMNAFMVW+Q RRK+ DQ+P +HNAE+SK LG+ W+LL +SEK PFV EAERLR+
Sbjct: 101 HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRV 160
Query: 99 KHMADYPDYKYRPRKKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGG 158
+H D+PDYKY+PR++ AKA G S S + GP PG G A LG G
Sbjct: 161 QHKKDHPDYKYQPRRRKS---AKA-----GHSDSDSGAELGPH-PGGGAVYKAEAGLGDG 211
>gi|28195386 sex-determining region Y-box 2 [Homo sapiens]
Length = 317
Score = 123 bits (309), Expect = 2e-28
Identities = 70/152 (46%), Positives = 88/152 (57%), Gaps = 18/152 (11%)
Query: 17 PPGPGPAEEG-------AREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAE 69
PPGP G A G K +KRPMNAFMVWS+ +RRK+ + P MHN+E
Sbjct: 11 PPGPQQTSGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSE 70
Query: 70 ISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGG 129
ISKRLG W+LL ++EK PF+ EA+RLR HM ++PDYKYRPR+K+K K + PGG
Sbjct: 71 ISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGG 130
Query: 130 SGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAA 161
L PG G A+G +G G A
Sbjct: 131 -----LLAPG------GNSMASGVGVGAGLGA 151
>gi|4759162 SRY-box 14 [Homo sapiens]
Length = 240
Score = 123 bits (308), Expect = 2e-28
Identities = 66/131 (50%), Positives = 85/131 (64%), Gaps = 14/131 (10%)
Query: 36 PSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAER 95
PS HIKRPMNAFMVWS+ +RRK+ + P MHN+EISKRLG W+LL ++EK P++ EA+R
Sbjct: 4 PSDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKR 63
Query: 96 LRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPL 155
LR +HM ++PDYKYRPR+K K K R + P P L +AAG P+
Sbjct: 64 LRAQHMKEHPDYKYRPRRKPKNLLKKDR-----------YVFPLPYLGDTDPLKAAGLPV 112
Query: 156 G---GGAAAPE 163
G G +APE
Sbjct: 113 GASDGLLSAPE 123
>gi|4557853 transcription factor SOX9 [Homo sapiens]
Length = 509
Score = 120 bits (300), Expect = 2e-27
Identities = 69/171 (40%), Positives = 88/171 (51%), Gaps = 39/171 (22%)
Query: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
H+KRPMNAFMVW+Q RRK+ DQ+P +HNAE+SK LG+ W+LL +SEK PFV EAERLR+
Sbjct: 104 HVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRV 163
Query: 99 KHMADYPDYKYRPRKKS--KGAPAKARP------------------------------RP 126
+H D+PDYKY+PR++ K A+A
Sbjct: 164 QHKKDHPDYKYQPRRRKSVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHS 223
Query: 127 PGGSGGGSRLKPGPQL-------PGRGGRRAAGGPLGGGAAAPEDDDEDDD 170
PG G S+ P P PG+ + G PL G P D D D
Sbjct: 224 PGEHSGQSQGPPTPPTTPKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVD 274
>gi|30179900 SRY (sex determining region Y)-box 1 [Homo sapiens]
Length = 391
Score = 120 bits (300), Expect = 2e-27
Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 19 GPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRW 78
G G G G K +KRPMNAFMVWS+ +RRK+ + P MHN+EISKRLG W
Sbjct: 30 GGGGGGGGGGGGGGAKANQDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEW 89
Query: 79 QLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGG------SGG 132
+++ ++EK PF+ EA+RLR HM ++PDYKYRPR+K+K K + GG GG
Sbjct: 90 KVMSEAEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLLKKDKYSLAGGLLAAGAGGG 149
Query: 133 GSRLKPGPQLPGRG----GRR--AAGGPLGGGAA 160
G+ + G + G G G+R + GG GGG A
Sbjct: 150 GAAVAMGVGV-GVGAAAVGQRLESPGGAAGGGYA 182
Score = 29.6 bits (65), Expect = 3.6
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 127 PGGSGGGSRLKPGPQLPGRGGRRAAGGPLGGGAAAPED 164
PGG+ + L GP G GG GG GGGA A +D
Sbjct: 13 PGGAQAPTNLS-GPAGAGGGGGGGGGGGGGGGAKANQD 49
>gi|13899269 SRY-box 7 [Homo sapiens]
Length = 388
Score = 119 bits (299), Expect = 3e-27
Identities = 72/179 (40%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 12 DGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEIS 71
DG PP P P + E I+RPMNAFMVW++ ER+++ Q PD+HNAE+S
Sbjct: 25 DGQSPPAVPRPPGDKGSE--------SRIRRPMNAFMVWAKDERKRLAVQNPDLHNAELS 76
Query: 72 KRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKK----------------- 114
K LG+ W+ L S+K P+V EAERLRL+HM DYP+YKYRPR+K
Sbjct: 77 KMLGKSWKALTLSQKRPYVDEAERLRLQHMQDYPNYKYRPRRKKQAKRLCKRVDPGFLLS 136
Query: 115 SKGAPAKARPRPPGGSGGG-------SRLKPGPQLPGRGGRRAAGGPLGGGAAAPEDDD 166
S A P GS G PG LP G G GGG P D
Sbjct: 137 SLSRDQNALPEKRSGSRGALGEKEDRGEYSPGTALPSLRGCYHEGPAGGGGGGTPSSVD 195
>gi|8924248 SRY-box 18 [Homo sapiens]
Length = 384
Score = 115 bits (288), Expect = 5e-26
Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 24/139 (17%)
Query: 17 PPGPGPAEEGAREPG-WCKTPSGH----------IKRPMNAFMVWSQHERRKIMDQWPDM 65
PP P + + EPG + +P+G I+RPMNAFMVW++ ER+++ Q PD+
Sbjct: 51 PPSPQRSPPRSPEPGRYGLSPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDL 110
Query: 66 HNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPR 125
HNA +SK LG+ W+ L +EK PFV EAERLR++H+ D+P+YKYRPR+K + A+
Sbjct: 111 HNAVLSKMLGKAWKELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKAR---- 166
Query: 126 PPGGSGGGSRLKPGPQLPG 144
RL+PG LPG
Sbjct: 167 ---------RLEPGLLLPG 176
>gi|11967991 SRY-box 17 [Homo sapiens]
Length = 414
Score = 115 bits (287), Expect = 7e-26
Identities = 64/144 (44%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 10 KRDGGPPPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAE 69
K G P PA R G I+RPMNAFMVW++ ER+++ Q PD+HNAE
Sbjct: 43 KVKGEAPANSGAPAGAAGRAKG-----ESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAE 97
Query: 70 ISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGG 129
+SK LG+ W+ L +EK PFV EAERLR++HM D+P+YKYRPR++ + K R GG
Sbjct: 98 LSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQ---VKRLKRVEGG 154
Query: 130 SGGGSRLKPGPQLPGRGGRRAAGG 153
G L GGR A G
Sbjct: 155 FLHGLAEPQAAALGPEGGRVAMDG 178
>gi|41406089 SRY-box 13 [Homo sapiens]
Length = 622
Score = 105 bits (261), Expect = 7e-23
Identities = 46/78 (58%), Positives = 58/78 (74%)
Query: 37 SGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERL 96
S HIKRPMNAFMVW++ ERRKI+ +PDMHN+ ISK LG RW+ + + EK P+ E RL
Sbjct: 421 SSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARL 480
Query: 97 RLKHMADYPDYKYRPRKK 114
+H+ YPDYKY+PR K
Sbjct: 481 SRQHLEKYPDYKYKPRPK 498
>gi|30061558 SRY (sex determining region Y)-box 5 isoform c [Homo
sapiens]
Length = 377
Score = 103 bits (256), Expect = 3e-22
Identities = 45/76 (59%), Positives = 57/76 (75%)
Query: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
HIKRPMNAFMVW++ ERRKI+ +PDMHN+ ISK LG RW+ + + EK P+ E RL
Sbjct: 169 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSK 228
Query: 99 KHMADYPDYKYRPRKK 114
+H+ YPDYKY+PR K
Sbjct: 229 QHLEKYPDYKYKPRPK 244
>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
sapiens]
Length = 750
Score = 103 bits (256), Expect = 3e-22
Identities = 45/76 (59%), Positives = 57/76 (75%)
Query: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
HIKRPMNAFMVW++ ERRKI+ +PDMHN+ ISK LG RW+ + + EK P+ E RL
Sbjct: 542 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSK 601
Query: 99 KHMADYPDYKYRPRKK 114
+H+ YPDYKY+PR K
Sbjct: 602 QHLEKYPDYKYKPRPK 617
>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
sapiens]
Length = 763
Score = 103 bits (256), Expect = 3e-22
Identities = 45/76 (59%), Positives = 57/76 (75%)
Query: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
HIKRPMNAFMVW++ ERRKI+ +PDMHN+ ISK LG RW+ + + EK P+ E RL
Sbjct: 555 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSK 614
Query: 99 KHMADYPDYKYRPRKK 114
+H+ YPDYKY+PR K
Sbjct: 615 QHLEKYPDYKYKPRPK 630
>gi|224967054 SRY (sex determining region Y)-box 6 isoform 4 [Homo
sapiens]
Length = 841
Score = 100 bits (249), Expect = 2e-21
Identities = 44/76 (57%), Positives = 56/76 (73%)
Query: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
HIKRPMNAFMVW++ ERRKI+ +PDMHN+ ISK LG RW+ + + EK P+ E RL
Sbjct: 633 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSK 692
Query: 99 KHMADYPDYKYRPRKK 114
H+ YP+YKY+PR K
Sbjct: 693 IHLEKYPNYKYKPRPK 708
>gi|224967050 SRY (sex determining region Y)-box 6 isoform 3 [Homo
sapiens]
Length = 801
Score = 100 bits (249), Expect = 2e-21
Identities = 44/76 (57%), Positives = 56/76 (73%)
Query: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
HIKRPMNAFMVW++ ERRKI+ +PDMHN+ ISK LG RW+ + + EK P+ E RL
Sbjct: 593 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSK 652
Query: 99 KHMADYPDYKYRPRKK 114
H+ YP+YKY+PR K
Sbjct: 653 IHLEKYPNYKYKPRPK 668
>gi|70909338 SRY (sex determining region Y)-box 6 isoform 1 [Homo
sapiens]
Length = 804
Score = 100 bits (249), Expect = 2e-21
Identities = 44/76 (57%), Positives = 56/76 (73%)
Query: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
HIKRPMNAFMVW++ ERRKI+ +PDMHN+ ISK LG RW+ + + EK P+ E RL
Sbjct: 596 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSK 655
Query: 99 KHMADYPDYKYRPRKK 114
H+ YP+YKY+PR K
Sbjct: 656 IHLEKYPNYKYKPRPK 671
>gi|71037389 SRY (sex determining region Y)-box 6 isoform 2 [Homo
sapiens]
Length = 808
Score = 100 bits (249), Expect = 2e-21
Identities = 44/76 (57%), Positives = 56/76 (73%)
Query: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
HIKRPMNAFMVW++ ERRKI+ +PDMHN+ ISK LG RW+ + + EK P+ E RL
Sbjct: 600 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSK 659
Query: 99 KHMADYPDYKYRPRKK 114
H+ YP+YKY+PR K
Sbjct: 660 IHLEKYPNYKYKPRPK 675
>gi|4507225 sex determining region Y [Homo sapiens]
Length = 204
Score = 99.0 bits (245), Expect = 5e-21
Identities = 43/80 (53%), Positives = 63/80 (78%)
Query: 40 IKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLK 99
+KRPMNAF+VWS+ +RRK+ + P M N+EISK+LG +W++L ++EK PF +EA++L+
Sbjct: 60 VKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAM 119
Query: 100 HMADYPDYKYRPRKKSKGAP 119
H YP+YKYRPR+K+K P
Sbjct: 120 HREKYPNYKYRPRRKAKMLP 139
>gi|5902112 SRY (sex determining region Y)-box 30 isoform b [Homo
sapiens]
Length = 501
Score = 82.4 bits (202), Expect = 5e-16
Identities = 36/91 (39%), Positives = 58/91 (63%)
Query: 22 PAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLL 81
P++ G + + K +GH+KRPMNAFMVW++ R + P +NAEIS +LG W L
Sbjct: 319 PSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKL 378
Query: 82 QDSEKIPFVREAERLRLKHMADYPDYKYRPR 112
+ +K P+ EA++++ KH ++P + Y+PR
Sbjct: 379 SEEQKKPYYDEAQKIKEKHREEFPGWVYQPR 409
>gi|30581117 SRY (sex determining region Y)-box 30 isoform a [Homo
sapiens]
Length = 753
Score = 82.4 bits (202), Expect = 5e-16
Identities = 36/91 (39%), Positives = 58/91 (63%)
Query: 22 PAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLL 81
P++ G + + K +GH+KRPMNAFMVW++ R + P +NAEIS +LG W L
Sbjct: 319 PSDAGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKL 378
Query: 82 QDSEKIPFVREAERLRLKHMADYPDYKYRPR 112
+ +K P+ EA++++ KH ++P + Y+PR
Sbjct: 379 SEEQKKPYYDEAQKIKEKHREEFPGWVYQPR 409
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 71.2 bits (173), Expect = 1e-12
Identities = 86/328 (26%), Positives = 127/328 (38%), Gaps = 74/328 (22%)
Query: 16 PPPGPGPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLG 75
P +E+ R P K HI+RPMNAFM++S+ R + + P+ N +SK LG
Sbjct: 178 PKERDSSSEKDGRSPN--KREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILG 235
Query: 76 RRWQLLQDSEKIPFVREAERLRLKHMADYPDYKY--RPRKKSKGAPAKARPRPPGGSGG- 132
W L EK + A +++ H +PD+K+ + RKKS ++A+P G +GG
Sbjct: 236 EWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSS---SEAKPTSLGLAGGH 292
Query: 133 -----------GSRLKPG-----------------PQLPGR---GGRR--AAGGPLGGGA 159
G+ PG + PG G R GGP G+
Sbjct: 293 KETRERSMSETGTAAAPGVSSELLSVAAQTLLSSDTKAPGSSSCGAERLHTVGGP---GS 349
Query: 160 AAPEDDDEDDDEELLEVRLVETPGRELWRMVPAGRAARGQAERAQ----GP---SGEGAA 212
A P L + +EL +MV + G Q GP GEG A
Sbjct: 350 ARPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSTQYGAPGPFAAPGEGGA 409
Query: 213 AAAAASP-----------TPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLPPG 261
AA P + ++ +EE EEG+++ +A GF G
Sbjct: 410 LAATGRPPLLPTRASRSQRAASEDMTSDEERMVICEEEGDDDVIADD----GF------G 459
Query: 262 PAGLDCSALDRDPDLQPPSGTSHFEFPD 289
+D +R D + SG S E P+
Sbjct: 460 TTDIDLKCKERVTDSE--SGDSSGEDPE 485
Score = 30.4 bits (67), Expect = 2.1
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 81 LQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAKARPRPPGGSGGGSRLKPG- 139
L S+ P V+ +E + A +P + ++ ++ A A A RPPGG+G +P
Sbjct: 44 LAPSQPDPSVQPSEA---QQPASHPVASNQSKEPAESA-AVAHERPPGGTGSADPERPPG 99
Query: 140 ---PQLPGRGGRRAAGGPLGGGAAAPEDDDE 167
P+ PG G G G P ++E
Sbjct: 100 ATCPESPGPGPPHPLGVVESGKGPPPTTEEE 130
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 59.7 bits (143), Expect = 3e-09
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 21 GPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQL 80
GPA+ G ++ K P+ KRP + F ++ R KI P + +++K+LG W
Sbjct: 79 GPAKGGKKK----KDPNAP-KRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNN 133
Query: 81 LQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAK 121
L DSEK P++ +A +L+ K+ D DYK + + PAK
Sbjct: 134 LNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAK 174
Score = 50.1 bits (118), Expect = 3e-06
Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 25/214 (11%)
Query: 34 KTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPF--VR 91
K P G K AF V + E K + ++ AE SK+ RW+ + EK F +
Sbjct: 7 KKPKG--KMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 92 EAERLRL-KHMADYPDYKYRPRKKSKGAPAKARPRPPGGSG-GGSRLKPGPQLPGRGGRR 149
+A+++R + M DY K +KK AP RPP G S +P + G
Sbjct: 65 KADKVRYDREMKDYGPAKGGKKKKDPNAPK----RPPSGFFLFCSEFRPKIKSTNPG--- 117
Query: 150 AAGGPLGGGAAAPEDDDEDDDEELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGE 209
+ G + ++ D +++ + + +E + A ++G+ + A+GP
Sbjct: 118 ISIGDVAKKLGEMWNNLNDSEKQPYITKAAKL--KEKYEKDVADYKSKGKFDGAKGP--- 172
Query: 210 GAAAAAAASPTPSEDEEPEEEEEEAAAAEEGEEE 243
A A EDEE EEEEEE EE EE+
Sbjct: 173 ---AKVARKKVEEEDEEEEEEEEE----EEEEED 199
>gi|226371764 transcription factor 7-like 2 isoform 1 [Homo sapiens]
Length = 602
Score = 58.9 bits (141), Expect = 6e-09
Identities = 61/242 (25%), Positives = 98/242 (40%), Gaps = 40/242 (16%)
Query: 39 HIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRL 98
HIK+P+NAFM++ + R K++ + +A I++ LGRRW L E+ + A + R
Sbjct: 349 HIKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQ 408
Query: 99 KHMADYPDYKYRPR--KKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGRGGRRAAGGPLG 156
HM YP + R KK K + R + PG + + K L G
Sbjct: 409 LHMQLYPGWSARDNYGKKKK----RKRDKQPGETNDANTPKKCRALFGL----------- 453
Query: 157 GGAAAPEDDDEDDDEELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAA 216
D + L + P R + V R +G+ PS +G +
Sbjct: 454 -------------DRQTLWCK----PCRRKKKCV---RYIQGEGSCLSPPSSDG---SLL 490
Query: 217 ASPTPSEDEEPEEEEEEAAAAEEGEEETVASGEESLGFLSRLPPGPAGLDCSALDRDPDL 276
SP PS + + + E+ + +++ + L LS +PP PA L A + L
Sbjct: 491 DSPPPSPNLLGSPPRDAKSQTEQTQPLSLSLKPDPLAHLSMMPPPPALLLAEATHKASAL 550
Query: 277 QP 278
P
Sbjct: 551 CP 552
>gi|169168462 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 204
Score = 57.8 bits (138), Expect = 1e-08
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 21 GPAEEGAREPGWCKTPSGHIKRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQL 80
GPA+ G ++ K PS KRP + F ++S R KI P + +++K+LG W
Sbjct: 74 GPAKGGKKK----KDPSAP-KRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNN 128
Query: 81 LQDSEKIPFVREAERLRLKHMADYPDYKYRPRKKSKGAPAK 121
L DSEK P++ + +L+ K+ D D K + + PAK
Sbjct: 129 LNDSEKQPYITKTAKLKEKYEKDVADSKSKGKFDGSKRPAK 169
Score = 28.9 bits (63), Expect = 6.2
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 41 KRPMNAFMVWSQHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPF--VREAERLRL 98
K M+A++ + Q R + + P ++ AE SK+ RW+ + EK F + + +++
Sbjct: 10 KGKMSAYVFFVQTCREECKKKNP-VNFAEFSKKCSERWKTMSGKEKSKFDEMAKTDKVHC 68
Query: 99 KHMADYPDYKYRPRKKSKGAPAKARPRPPGG 129
P K +KK AP RPP G
Sbjct: 69 DREMKGP-AKGGKKKKDPSAP----KRPPSG 94
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,828,822
Number of Sequences: 37866
Number of extensions: 1298048
Number of successful extensions: 22013
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 893
Number of HSP's that attempted gapping in prelim test: 12852
Number of HSP's gapped (non-prelim): 6526
length of query: 315
length of database: 18,247,518
effective HSP length: 102
effective length of query: 213
effective length of database: 14,385,186
effective search space: 3064044618
effective search space used: 3064044618
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.