Guide to the Human Genome
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Name: ATAD3C Sequence: fasta or formatted (411aa) NCBI GI: 194018490
Description:

ATPase family, AAA domain containing 3C

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         40           2
 C cysteine            1.2          5           1
 D aspartate           4.9         20           1
 E glutamate           6.6         27           2
 F phenylalanine       3.4         14           1
 G glycine             6.3         26           2
 H histidine           2.4         10           2
 I isoleucine          3.6         15           1
 K lysine              5.8         24           2
 L leucine            11.7         48           3
 M methionine          3.6         15           2
 N asparagine          2.4         10           1
 P proline             3.2         13           2
 Q glutamine           6.1         25           2
 R arginine            8.3         34           2
 S serine              5.1         21           2
 T threonine           5.8         24           1
 V valine              6.3         26           2
 W tryptophan          1.0          4           1
 Y tyrosine            2.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase family, AAA domain containing 3C 
ATAD3B                0.779   AAA-ATPase  TOB3 
ATAD3A                0.775   ATPase family, AAA domain containing 3A 
LOC732419             0.332   PREDICTED: similar to belphegor 
SPG7                  0.046   spastic paraplegia 7 isoform 1 
PSMC3                 0.046   proteasome 26S ATPase subunit 3 
PSMC6                 0.045   proteasome 26S ATPase subunit 6 
KATNAL1               0.041   katanin p60 subunit A-like 1 
KATNAL1               0.041   katanin p60 subunit A-like 1 
VCP                   0.038   valosin-containing protein 
VPS4A                 0.038   vacuolar protein sorting factor 4A 
FIGNL1                0.038   fidgetin-like 1 
FIGNL1                0.038   fidgetin-like 1 
VPS4B                 0.038   vacuolar protein sorting factor 4B 
SPAST                 0.037   spastin isoform 2 
SPAST                 0.037   spastin isoform 1 
YME1L1                0.037   YME1-like 1 isoform 1 
YME1L1                0.037   YME1-like 1 isoform 3 
KATNA1                0.037   katanin p60 subunit A 1 
SPATA5                0.037   spermatogenesis associated 5 
PSMC5                 0.036   proteasome 26S ATPase subunit 5 
ATAD1                 0.036   ATPase family, AAA domain containing 1 
NVL                   0.034   nuclear VCP-like isoform 2 
NVL                   0.034   nuclear VCP-like isoform 1 
KATNAL2               0.034   katanin p60 subunit A-like 2 
PSMC2                 0.034   proteasome 26S ATPase subunit 2 
PSMC1                 0.031   proteasome 26S ATPase subunit 1 
SPG7                  0.031   spastic paraplegia 7 isoform 2 
AFG3L2                0.029   AFG3 ATPase family gene 3-like 2 
LOC652826             0.029   PREDICTED: similar to proteasome 26S ATPase subunit ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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