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Search of human proteins with 189339239
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189339239 hypothetical protein LOC55009 [Homo sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189339239 hypothetical protein LOC55009 [Homo sapiens] 265 8e-72
gi|38348322 family with sequence similarity 174, member A [Homo ... 39 0.001
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 36 0.010
gi|150170694 hypothetical protein LOC400451 [Homo sapiens] 35 0.013
gi|117320535 proline-rich protein 3 isoform a [Homo sapiens] 34 0.029
gi|22027471 neuronal PAS domain protein 2 [Homo sapiens] 33 0.085
gi|154937344 complement component 1, q subcomponent-like 2 [Homo... 33 0.085
gi|157364934 fibrosin [Homo sapiens] 32 0.15
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 32 0.15
gi|7706501 WW domain binding protein 11 [Homo sapiens] 32 0.19
gi|11321593 insulin-like growth factor binding protein 6 [Homo s... 31 0.25
gi|189571647 hypothetical protein LOC79684 [Homo sapiens] 31 0.25
gi|110815800 WD repeat domain 32 [Homo sapiens] 31 0.32
gi|57163987 solute carrier family 8 member 2 [Homo sapiens] 31 0.32
gi|4757760 adiponectin precursor [Homo sapiens] 30 0.42
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ... 30 0.42
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ... 30 0.42
gi|21450863 attractin isoform 2 [Homo sapiens] 30 0.42
gi|21450861 attractin isoform 1 [Homo sapiens] 30 0.42
gi|58331148 matrix metalloproteinase 11 preproprotein [Homo sapi... 30 0.42
gi|13376888 hole protein [Homo sapiens] 30 0.42
gi|38016937 lemur tyrosine kinase 2 [Homo sapiens] 30 0.55
gi|11641269 dipeptidase 2 precursor [Homo sapiens] 30 0.55
gi|219842220 FK506 binding protein 11 isoform 3 precursor [Homo ... 30 0.72
gi|7706131 FK506 binding protein 11 isoform 1 precursor [Homo sa... 30 0.72
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 30 0.72
gi|23510333 pygopus homolog 2 [Homo sapiens] 30 0.72
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 30 0.72
gi|239753238 PREDICTED: hypothetical protein XP_002345592 [Homo ... 29 0.94
>gi|189339239 hypothetical protein LOC55009 [Homo sapiens]
Length = 132
Score = 265 bits (677), Expect = 8e-72
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGPRVLQPPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHT 60
MGPRVLQPPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHT
Sbjct: 1 MGPRVLQPPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHT 60
Query: 61 RPPGASGSALTRSFYVILGFCGLTALYFLIRAFRLKKPQRRRYGLLANTEDPTEMASLDS 120
RPPGASGSALTRSFYVILGFCGLTALYFLIRAFRLKKPQRRRYGLLANTEDPTEMASLDS
Sbjct: 61 RPPGASGSALTRSFYVILGFCGLTALYFLIRAFRLKKPQRRRYGLLANTEDPTEMASLDS 120
Query: 121 DEETVFESRNLR 132
DEETVFESRNLR
Sbjct: 121 DEETVFESRNLR 132
>gi|38348322 family with sequence similarity 174, member A [Homo
sapiens]
Length = 190
Score = 39.3 bits (90), Expect = 0.001
Identities = 51/177 (28%), Positives = 72/177 (40%), Gaps = 49/177 (27%)
Query: 5 VLQPPLLLLLLALL---LAALPCGAEEA---SPLRPAQVTLSP-PPAVTNGSQPG----- 52
+L LLLLLL L LA L AE A P P TL P PP T QPG
Sbjct: 13 LLASVLLLLLLPELSGPLAVLLQAAEAAPGLGPPDPRPRTLPPLPPGPTPAQQPGRGLAE 72
Query: 53 --APHNS---THTRP--------------PGASGSALT------------RSFYVILGFC 81
P S + P G+ G L R+ V++
Sbjct: 73 AAGPRGSEGGNGSNPVAGLETDDHGGKAGEGSVGGGLAVSPNPGDKPMTQRALTVLMVVS 132
Query: 82 GLTALYFLIRAFRLKKPQR--RRYGLLANTEDPTEMASLDSDEE----TVFESRNLR 132
G +YF++R R+++ R RRYG+L + E+ L+ D+E T+F++ + R
Sbjct: 133 GAVLVYFVVRTVRMRRRNRKTRRYGVLDTNIENMELTPLEQDDEDDDNTLFDANHPR 189
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 35.8 bits (81), Expect = 0.010
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 23 PCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASGSA 69
PC +P PA T SPP A + S P +P + HTRP G A
Sbjct: 1121 PC--RSPAPDVPADTTASPPSASPSSSSPASPAAAGHTRPSSLHGLA 1165
Score = 26.2 bits (56), Expect = 8.0
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 19 LAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASGSALTRSFY 75
L P + SP P + PA T S P A +S+ P A+G S +
Sbjct: 1106 LPGSPTHSLSPSPTTPCRSPAPDVPADTTASPPSASPSSSSPASPAAAGHTRPSSLH 1162
>gi|150170694 hypothetical protein LOC400451 [Homo sapiens]
Length = 159
Score = 35.4 bits (80), Expect = 0.013
Identities = 43/150 (28%), Positives = 58/150 (38%), Gaps = 28/150 (18%)
Query: 6 LQPPLLLLLLALLLAALPCGAEEA--------SPLRPAQVTLSPPPAVTNGSQPGAPHNS 57
L PLL LLL LLAA A A P R ++ P P T GA S
Sbjct: 6 LPAPLLPLLLLALLAAPAARASRAESVSAPWPEPERESRPPPGPGPGNTTRFGSGAAGGS 65
Query: 58 THTRPPGASGSALTR-------------SFYVILGFCGLTALYFLIRAFRLKK--PQRRR 102
+ + + +TR + V F L L+R FR K + R+
Sbjct: 66 GSSSSNSSGDALVTRISILLRDLPTLKAAVIVAFAFTTLLIACLLLRVFRSGKRLKKTRK 125
Query: 103 YGLLANTEDPTEMASL----DSDEE-TVFE 127
Y ++ + EMA L D DE+ TVF+
Sbjct: 126 YDIITTPAERVEMAPLNEEDDEDEDSTVFD 155
>gi|117320535 proline-rich protein 3 isoform a [Homo sapiens]
Length = 188
Score = 34.3 bits (77), Expect = 0.029
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 27 EEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASG 67
E+ SP+ P + L PPP + NG +PG P ++ H PPG+ G
Sbjct: 30 EDGSPIGPPSL-LGPPP-MANG-KPGDPKSALHRGPPGSRG 67
>gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]
Length = 824
Score = 32.7 bits (73), Expect = 0.085
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 9 PLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHN--------STHT 60
P+LL+ A+L + P A + SPL+PAQ PP P + H+ ST++
Sbjct: 728 PVLLMGQAVLHPSFP--ASQPSPLQPAQARQQPPQHYLQVQAPTSLHSEQQDSLLLSTYS 785
Query: 61 RPPGASG 67
+ PG G
Sbjct: 786 QQPGTLG 792
>gi|154937344 complement component 1, q subcomponent-like 2 [Homo
sapiens]
Length = 287
Score = 32.7 bits (73), Expect = 0.085
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 11 LLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASGSAL 70
LL+ + LLL A P GA + ++ P A G PGA +PPG S +AL
Sbjct: 5 LLIAVPLLLQAAPRGAAHYEMMGTCRMICDPYTAAPGGEPPGA-----KAQPPGPSTAAL 59
>gi|157364934 fibrosin [Homo sapiens]
Length = 460
Score = 32.0 bits (71), Expect = 0.15
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 3 PRVLQPPLL------LLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHN 56
PR+ +PP L + AA G E A PL +++ PPPA + PG PH
Sbjct: 369 PRLARPPRFYEAGEELTGPGAVAAARLYGLEPAHPLLYSRLAPPPPPA----AAPGTPHL 424
Query: 57 STHTRPPGA 65
+ T PPGA
Sbjct: 425 LSKT-PPGA 432
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 32.0 bits (71), Expect = 0.15
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 3 PRVLQPPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNS--THT 60
P + PP L+ L + LLAA L P T P P V + QPG P +S T T
Sbjct: 665 PPLSAPPTLIALNSALLAAT---------LDPPSGT-PPQPCVLSAPQPGPPTSSVTTAT 714
Query: 61 RPPGAS 66
PGAS
Sbjct: 715 TDPGAS 720
Score = 28.1 bits (61), Expect = 2.1
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 3 PRVLQP--PLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHT 60
P QP P +L LL L P ++ + L + L PPP +++GS P H +
Sbjct: 402 PEPSQPILPSVLSLLGLPTPG-PSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPS 460
Query: 61 RPPGASGS 68
P SGS
Sbjct: 461 LPGTTSGS 468
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 31.6 bits (70), Expect = 0.19
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 23 PCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASG 67
P G A PLRP PP + G PGAP RPPG G
Sbjct: 412 PLGPPPAPPLRPP----GPPTGLPPGPPPGAP---PFLRPPGMPG 449
Score = 26.6 bits (57), Expect = 6.1
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 3 PRVLQPPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQP-GAPHNSTHTR 61
P L+PP + L L LP G P RP PPP + G P G P
Sbjct: 439 PPFLRPPGMPGLRGPLPRLLPPGPP---PGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPA 495
Query: 62 PPG 64
PPG
Sbjct: 496 PPG 498
>gi|11321593 insulin-like growth factor binding protein 6 [Homo
sapiens]
Length = 240
Score = 31.2 bits (69), Expect = 0.25
Identities = 25/54 (46%), Positives = 26/54 (48%), Gaps = 13/54 (24%)
Query: 1 MGPRVLQPPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAP 54
M P L PPLLLLL ALLLAA P GA L+ P G Q G P
Sbjct: 1 MTPHRLLPPLLLLL-ALLLAASPGGA------------LARCPGCGQGVQAGCP 41
>gi|189571647 hypothetical protein LOC79684 [Homo sapiens]
Length = 507
Score = 31.2 bits (69), Expect = 0.25
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 21 ALPCGAE--EASPLR-PAQVTLSP--PPAVTNG----SQPGAPHNSTHTRPPGASGSALT 71
A PCG+E SPL+ P LSP P +++G S P P ++ P A+GS
Sbjct: 2 AAPCGSELPANSPLKIPKMEVLSPASPGGLSDGNPSLSDPSTPRGASPLGPGSAAGSGAA 61
Query: 72 RSFYVILGFCGLTA 85
S + LG G +A
Sbjct: 62 ASGGLGLGLGGRSA 75
>gi|110815800 WD repeat domain 32 [Homo sapiens]
Length = 559
Score = 30.8 bits (68), Expect = 0.32
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 30 SPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRP 62
SP RP +LSP P PGAP +ST + P
Sbjct: 53 SPRRPGAPSLSPAPRSGELGLPGAPESSTASAP 85
Score = 28.1 bits (61), Expect = 2.1
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 30 SPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRP-----PGASGSA 69
SPL P PPP + +PGAP S R PGA S+
Sbjct: 36 SPLHPGADATHPPPPARSPRRPGAPSLSPAPRSGELGLPGAPESS 80
>gi|57163987 solute carrier family 8 member 2 [Homo sapiens]
Length = 921
Score = 30.8 bits (68), Expect = 0.32
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 9 PLLLLLLALLLAALPC-GAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRP 62
PL L+ + LLLAA PC GA +P +L PPPA + + G S +P
Sbjct: 3 PLALVGVTLLLAAPPCSGAATPTP------SLPPPPANDSDTSTGGCQGSYRCQP 51
>gi|4757760 adiponectin precursor [Homo sapiens]
Length = 244
Score = 30.4 bits (67), Expect = 0.42
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 10 LLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASG 67
+LLL LLL ALP +E + P V L P G G P + H PG G
Sbjct: 1 MLLLGAVLLLLALPGHDQETTTQGPG-VLLPLPKGACTGWMAGIPGHPGHNGAPGRDG 57
>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 30.4 bits (67), Expect = 0.42
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 8 PPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNS---THTRPPG 64
PP LA LP SP RP +PP S+PG P S + R PG
Sbjct: 101 PPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPP---LGKSEPGEPETSGPRAYLRDPG 157
Query: 65 ASGS 68
AS +
Sbjct: 158 ASAA 161
>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
sapiens]
Length = 208
Score = 30.4 bits (67), Expect = 0.42
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 8 PPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNS---THTRPPG 64
PP LA LP SP RP +PP S+PG P S + R PG
Sbjct: 101 PPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPP---LGKSEPGEPETSGPRAYLRDPG 157
Query: 65 ASGS 68
AS +
Sbjct: 158 ASAA 161
>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
sapiens]
Length = 208
Score = 30.4 bits (67), Expect = 0.42
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 8 PPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNS---THTRPPG 64
PP LA LP SP RP +PP S+PG P S + R PG
Sbjct: 101 PPETRARLAWAPRFLPTNGRRPSPPRPPMSAPTPP---LGKSEPGEPETSGPRAYLRDPG 157
Query: 65 ASGS 68
AS +
Sbjct: 158 ASAA 161
>gi|21450863 attractin isoform 2 [Homo sapiens]
Length = 1272
Score = 30.4 bits (67), Expect = 0.42
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 8/36 (22%)
Query: 3 PRVLQPPL------LLLLLA--LLLAALPCGAEEAS 30
PR+L PPL LLLLL+ LLL LPC AE A+
Sbjct: 50 PRLLSPPLRPRLLLLLLLLSPPLLLLLLPCEAEAAA 85
>gi|21450861 attractin isoform 1 [Homo sapiens]
Length = 1429
Score = 30.4 bits (67), Expect = 0.42
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 8/36 (22%)
Query: 3 PRVLQPPL------LLLLLA--LLLAALPCGAEEAS 30
PR+L PPL LLLLL+ LLL LPC AE A+
Sbjct: 50 PRLLSPPLRPRLLLLLLLLSPPLLLLLLPCEAEAAA 85
>gi|58331148 matrix metalloproteinase 11 preproprotein [Homo
sapiens]
Length = 488
Score = 30.4 bits (67), Expect = 0.42
Identities = 27/68 (39%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 4 RVLQPPLLLLLL---ALLLAALP-----CGAEEASPLRPAQVTLSPPPAVTNGSQPGAPH 55
R L PP+LLLLL LL ALP AE P +P L PA +Q AP
Sbjct: 13 RALLPPMLLLLLQPPPLLARALPPDAHHLHAERRGP-QPWHAALPSSPAPAPATQE-APR 70
Query: 56 NSTHTRPP 63
++ RPP
Sbjct: 71 PASSLRPP 78
>gi|13376888 hole protein [Homo sapiens]
Length = 319
Score = 30.4 bits (67), Expect = 0.42
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 23 PCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPP 63
P + E P P + ++ PPP +G PG PH S+ TR P
Sbjct: 277 PALSLELQPPPPQRNSVPPPPPPLHGP-PGRPHMSSPTRDP 316
>gi|38016937 lemur tyrosine kinase 2 [Homo sapiens]
Length = 1503
Score = 30.0 bits (66), Expect = 0.55
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 2 GPRVLQPPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGS 49
GP L+ LLLLLL LL+A G+ A+PL +PP A + S
Sbjct: 3 GPPALRRRLLLLLLVLLIA----GSAGAAPLPQTGAGEAPPAAEVSSS 46
>gi|11641269 dipeptidase 2 precursor [Homo sapiens]
Length = 486
Score = 30.0 bits (66), Expect = 0.55
Identities = 29/77 (37%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 8 PPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASG 67
P L LLLL LLL + C P R A TL P A T PG ST P G
Sbjct: 16 PLLSLLLLLLLLQPVTCAYTTPGPPR-ALTTLGAPRAHT---MPGTYAPSTTLSSPSTQG 71
Query: 68 -----SALTRSFYVILG 79
AL R F ++ G
Sbjct: 72 LQEQARALMRDFPLVDG 88
>gi|219842220 FK506 binding protein 11 isoform 3 precursor [Homo
sapiens]
Length = 146
Score = 29.6 bits (65), Expect = 0.72
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 9 PLLLLLLALLLAAL---PCGAEEASPLRPAQV-TLSPPPAVTNGSQPGAPHNSTHTRPPG 64
PL LLLL LL AA+ G E SP+R QV TL PP ++P A ++ H G
Sbjct: 9 PLHLLLLLLLSAAVCRAEAGLETESPVRTLQVETLVEPPEPC--AEPAAFGDTLHIHYTG 66
Query: 65 A 65
+
Sbjct: 67 S 67
>gi|7706131 FK506 binding protein 11 isoform 1 precursor [Homo
sapiens]
Length = 201
Score = 29.6 bits (65), Expect = 0.72
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 9 PLLLLLLALLLAAL---PCGAEEASPLRPAQV-TLSPPPAVTNGSQPGAPHNSTHTRPPG 64
PL LLLL LL AA+ G E SP+R QV TL PP ++P A ++ H G
Sbjct: 9 PLHLLLLLLLSAAVCRAEAGLETESPVRTLQVETLVEPPEPC--AEPAAFGDTLHIHYTG 66
Query: 65 A 65
+
Sbjct: 67 S 67
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 29.6 bits (65), Expect = 0.72
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 2 GPRVLQPPLLLLLLALLLAALPCGAEEASPLRPAQVTLSPPPAVTN-GSQPGAPHNSTHT 60
GPR P LLLLLL LLAA GA+ +V L PP +PG
Sbjct: 3 GPRACAPLLLLLLLGELLAA--AGAQ--------RVGLPGPPGPPGPPGKPGQDGIDGEA 52
Query: 61 RPPGASG 67
PPG G
Sbjct: 53 GPPGLPG 59
>gi|23510333 pygopus homolog 2 [Homo sapiens]
Length = 406
Score = 29.6 bits (65), Expect = 0.72
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 17/62 (27%)
Query: 23 PCGAEEASPLRPAQVTLSP-------PPAVTNGSQPGAPHNST----------HTRPPGA 65
P G + PL P T P P A NG+QP P NS+ PPG
Sbjct: 254 PGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGRGGGTPDANSLAPPGK 313
Query: 66 SG 67
+G
Sbjct: 314 AG 315
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 29.6 bits (65), Expect = 0.72
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 27 EEASPLRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASGSALTRSFYVILG 79
EEA L Q++L+P ++G P NS +PP S T + ILG
Sbjct: 1450 EEAWDLDVKQISLAPETLDSSGDVSPGPRNSPSLQPPHPGSSTPTLASRGILG 1502
>gi|239753238 PREDICTED: hypothetical protein XP_002345592 [Homo
sapiens]
Length = 122
Score = 29.3 bits (64), Expect = 0.94
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 32 LRPAQVTLSPPPAVTNGSQPGAPHNSTHTRPPGASGSALTR 72
L QV L P A ++G +PGAP + + P S LT+
Sbjct: 82 LHDGQVGLPSPAAFSHGEKPGAPEQTRDSHHPRRSPLHLTQ 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,248,692
Number of Sequences: 37866
Number of extensions: 318863
Number of successful extensions: 2488
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 2295
Number of HSP's gapped (non-prelim): 292
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.