Guide to the Human Genome
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Name: FAM174A Sequence: fasta or formatted (190aa) NCBI GI: 38348322
Description:

family with sequence similarity 174, member A

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         17           2
 C cysteine            2.1          4           4
 D aspartate           5.8         11           3
 E glutamate           5.3         10           1
 F phenylalanine       1.1          2           1
 G glycine            11.6         22           3
 H histidine           1.6          3           1
 I isoleucine          0.5          1           1
 K lysine              2.1          4           1
 L leucine            13.7         26           6
 M methionine          2.6          5           1
 N asparagine          4.2          8           1
 P proline            11.1         21           2
 Q glutamine           3.2          6           2
 R arginine            7.9         15           3
 S serine              4.7          9           1
 T threonine           5.3         10           1
 V valine              7.4         14           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 174, member A 
FAM174B               0.124   hypothetical protein LOC400451 
FZD8                  0.050   frizzled 8 
FOXK1                 0.044   forkhead box K1 
MBD6                  0.041   methyl-CpG binding domain protein 6 
COL11A1               0.041   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.041   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.041   alpha 1 type XI collagen isoform A preproprotein [Ho...
HOXD11                0.041   homeobox D11 
RANBP9                0.041   RAN binding protein 9 
SHANK1                0.041   SH3 and multiple ankyrin repeat domains 1 
COL1A1                0.041   alpha 1 type I collagen preproprotein 
AGRN                  0.041   agrin 
MED25                 0.041   mediator complex subunit 25 
COL16A1               0.041   alpha 1 type XVI collagen precursor 
TCEB3CL               0.041   transcription elongation factor B polypeptide 3C-li...
TCEB3C                0.041   transcription elongation factor B polypeptide 3C [H...
RING1                 0.039   ring finger protein 1 
C19orf24              0.039   hypothetical protein LOC55009 
ONECUT3               0.039   one cut homeobox 3 
COL15A1               0.039   alpha 1 type XV collagen precursor 
AGAP2                 0.039   centaurin, gamma 1 isoform PIKE-L 
DBP                   0.039   D site of albumin promoter (albumin D-box) binding p...
INPPL1                0.039   inositol polyphosphate phosphatase-like 1 
SFPQ                  0.039   splicing factor proline/glutamine rich (polypyrimidin...
ZNF282                0.039   zinc finger protein 282 
PYGO2                 0.039   pygopus homolog 2 
TNKS                  0.036   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ZCCHC2                0.036   zinc finger, CCHC domain containing 2 
EMID2                 0.036   EMI domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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