Guide to the Human Genome
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Name: FLJ10357 Sequence: fasta or formatted (1519aa) NCBI GI: 50843837
Description:

hypothetical protein LOC55701

Referenced in:

Inositol Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4        143           3
 C cysteine            2.0         30           1
 D aspartate           3.3         50           2
 E glutamate           9.5        145           4
 F phenylalanine       2.2         33           2
 G glycine             9.5        145           6
 H histidine           2.6         40           1
 I isoleucine          1.8         28           1
 K lysine              2.8         42           2
 L leucine            13.1        199           3
 M methionine          1.0         15           1
 N asparagine          1.0         15           1
 P proline             9.6        146           3
 Q glutamine           5.5         83           3
 R arginine            8.0        122           4
 S serine              7.0        107           2
 T threonine           4.1         62           2
 V valine              5.1         77           3
 W tryptophan          1.2         18           1
 Y tyrosine            1.3         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55701 
PLEKHG4               0.123   pleckstrin homology domain containing, family G (wi...
PLEKHG4               0.123   pleckstrin homology domain containing, family G (wi...
PLEKHG4               0.123   pleckstrin homology domain containing, family G (wi...
PLEKHG4               0.123   pleckstrin homology domain containing, family G (wit...
PLEKHG4               0.118   pleckstrin homology domain containing, family G (wi...
PLEKHG4B              0.116   pleckstrin homology domain containing, family G (wi...
KIAA1755              0.077   hypothetical protein LOC85449 
MCF2L                 0.032   MCF.2 cell line derived transforming sequence-like ...
MCF2L                 0.032   MCF.2 cell line derived transforming sequence-like ...
GEFT                  0.029   RhoA/RAC/CDC42 exchange factor isoform 3 
GEFT                  0.029   RhoA/RAC/CDC42 exchange factor isoform 1 
MCF2                  0.026   MCF.2 cell line derived transforming sequence isofo...
MCF2                  0.026   MCF.2 cell line derived transforming sequence isofo...
KALRN                 0.025   kalirin, RhoGEF kinase isoform 1 
KALRN                 0.025   kalirin, RhoGEF kinase isoform 2 
TRIO                  0.025   triple functional domain (PTPRF interacting) 
KALRN                 0.024   kalirin, RhoGEF kinase isoform 3 
MCF2L2                0.018   Rho family guanine-nucleotide exchange factor 
OBSCN                 0.018   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.018   obscurin, cytoskeletal calmodulin and titin-interac...
COL11A1               0.015   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.015   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.015   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL5A3                0.013   collagen, type V, alpha 3 preproprotein 
COL1A2                0.013   alpha 2 type I collagen 
COL11A2               0.013   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.013   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.013   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL4A3                0.013   alpha 3 type IV collagen isoform 5 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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