Guide to the Human Genome
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Name: C19orf24 Sequence: fasta or formatted (132aa) NCBI GI: 189339239
Description:

hypothetical protein LOC55009

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         14           2
 C cysteine            1.5          2           1
 D aspartate           2.3          3           1
 E glutamate           5.3          7           2
 F phenylalanine       3.8          5           1
 G glycine             6.8          9           1
 H histidine           1.5          2           1
 I isoleucine          1.5          2           1
 K lysine              1.5          2           2
 L leucine            17.4         23           6
 M methionine          1.5          2           1
 N asparagine          3.0          4           1
 P proline            11.4         15           3
 Q glutamine           3.0          4           1
 R arginine            8.3         11           3
 S serine              7.6         10           1
 T threonine           6.8          9           1
 V valine              3.8          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55009 
FAM174A               0.058   family with sequence similarity 174, member A 
MAST3                 0.046   microtubule associated serine/threonine kinase 3 [H...
FAM174B               0.042   hypothetical protein LOC400451 
PRR3                  0.037   proline-rich protein 3 isoform a 
NPAS2                 0.033   neuronal PAS domain protein 2 
C1QL2                 0.033   complement component 1, q subcomponent-like 2 [Homo...
FBRS                  0.029   fibrosin 
MBD6                  0.029   methyl-CpG binding domain protein 6 
WBP11                 0.029   WW domain binding protein 11 
IGFBP6                0.025   insulin-like growth factor binding protein 6 
C11orf61              0.025   hypothetical protein LOC79684 
DCAF10                0.025   WD repeat domain 32 
SLC8A2                0.025   solute carrier family 8 member 2 
ADIPOQ                0.021   adiponectin precursor 
LOC100292801          0.021   PREDICTED: hypothetical protein 
LOC100290691          0.021   PREDICTED: hypothetical protein XP_002347934 
LOC100288156          0.021   PREDICTED: hypothetical protein XP_002344202 
ATRN                  0.021   attractin isoform 2 
ATRN                  0.021   attractin isoform 1 
MMP11                 0.021   matrix metalloproteinase 11 preproprotein 
TMEM121               0.021   hole protein 
LMTK2                 0.021   lemur tyrosine kinase 2 
DPEP2                 0.021   dipeptidase 2 precursor 
FKBP11                0.021   FK506 binding protein 11 isoform 3 precursor 
FKBP11                0.021   FK506 binding protein 11 isoform 1 precursor 
COL9A3                0.021   alpha 3 type IX collagen 
PYGO2                 0.021   pygopus homolog 2 
FLJ10357              0.021   hypothetical protein LOC55701 
LOC100291787          0.017   PREDICTED: hypothetical protein XP_002345592 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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