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Search of human proteins with 187829730
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
(261 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 560 e-160
gi|187829745 BCL2 binding component 3 isoform 3 [Homo sapiens] 154 1e-37
gi|187829742 BCL2 binding component 3 isoform 2 [Homo sapiens] 80 2e-15
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 64 1e-10
gi|48762934 alpha 2 type I collagen [Homo sapiens] 62 7e-10
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 60 2e-09
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 60 2e-09
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 59 3e-09
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 58 7e-09
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 58 7e-09
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 57 1e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 56 3e-08
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 56 4e-08
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 55 5e-08
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 55 8e-08
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 55 8e-08
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 55 8e-08
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 55 8e-08
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 54 1e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 54 1e-07
gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens] 54 1e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 54 1e-07
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 54 1e-07
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 54 1e-07
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 53 2e-07
gi|21955170 single stranded DNA binding protein 3 isoform a [Hom... 53 2e-07
gi|58218981 single stranded DNA binding protein 3 isoform c [Hom... 53 2e-07
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 53 3e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 52 4e-07
gi|110832843 TBP-associated factor 4 [Homo sapiens] 52 4e-07
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 560 bits (1444), Expect = e-160
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLP 60
MKFGMGSAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLP
Sbjct: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLP 60
Query: 61 ARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAP 120
ARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAP
Sbjct: 61 ARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAP 120
Query: 121 RPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGG 180
RPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGG
Sbjct: 121 RPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGG 180
Query: 181 RPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDS 240
RPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDS
Sbjct: 181 RPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDS 240
Query: 241 GGRPLPPPDTLASAGDFLCTM 261
GGRPLPPPDTLASAGDFLCTM
Sbjct: 241 GGRPLPPPDTLASAGDFLCTM 261
>gi|187829745 BCL2 binding component 3 isoform 3 [Homo sapiens]
Length = 101
Score = 154 bits (388), Expect = 1e-37
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 190 ETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPD 249
ETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPD
Sbjct: 30 ETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPD 89
Query: 250 TLASAGDFLCTM 261
TLASAGDFLCTM
Sbjct: 90 TLASAGDFLCTM 101
Score = 75.5 bits (184), Expect = 4e-14
Identities = 45/93 (48%), Positives = 48/93 (51%), Gaps = 24/93 (25%)
Query: 1 MKFGMGSAQACPCQVPRAASTTWVPCQIC--------------GPRERH--------GPR 38
MKFGMGSAQACPCQVPRAASTTWVPCQIC GP + H GP+
Sbjct: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQ 60
Query: 39 TP--GGQLPGARRGPGPRRPAPLPARPPGALGS 69
+P G QL R R P PP L S
Sbjct: 61 SPRDGAQLGACTRPVDVRDSGGRPLPPPDTLAS 93
>gi|187829742 BCL2 binding component 3 isoform 2 [Homo sapiens]
Length = 131
Score = 80.1 bits (196), Expect = 2e-15
Identities = 42/64 (65%), Positives = 46/64 (71%), Gaps = 8/64 (12%)
Query: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICGPR------ERHGPRTPGGQLPGARRGPGPR 54
MKFGMGSAQACPCQVPRAASTTWVPCQICGP+ E+H +P PGA G GP
Sbjct: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQH-LESPVPSAPGALAG-GPT 58
Query: 55 RPAP 58
+ AP
Sbjct: 59 QAAP 62
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 63.9 bits (154), Expect = 1e-10
Identities = 69/250 (27%), Positives = 89/250 (35%), Gaps = 47/250 (18%)
Query: 37 PRTPGG--QLPGARRGPGPRRPAPLPARPPGALGSV-LRPLRARPGCRPRRPHPAARCLP 93
PR+P G Q P + G P+ P P P +P G RP P +P+ P P
Sbjct: 90 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGD--- 146
Query: 94 LRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAP------GVARAQRPG 147
+ P +P G P G+ P P PG+ GG P G + P
Sbjct: 147 -KSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQ 205
Query: 148 GSGGRSHPGGPGSPRG----GGTVGPG-------DRGPAAADGGRPQRTVRAAETRG--- 193
G RS PG P+G GG G +GP G +PQ + +G
Sbjct: 206 GDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPA 265
Query: 194 -------AAAAPPLTLEGPVQSHHGTP--------ALTQGPQSPRDGAQLGACTRPVDVR 238
+A +PP +GP Q P Q PQ+P G G P
Sbjct: 266 QGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP---- 321
Query: 239 DSGGRPLPPP 248
GGRP PP
Sbjct: 322 -QGGRPSRPP 330
Score = 51.6 bits (122), Expect = 7e-07
Identities = 56/219 (25%), Positives = 74/219 (33%), Gaps = 24/219 (10%)
Query: 43 QLPGARRGPGPRRPAPLPARPPG-ALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTR 101
Q P + G P+ P P P +P G +P P +P+ P P + P
Sbjct: 37 QGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGD----KSRSPRS 92
Query: 102 RHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGG------AAPGVARAQRPGGSGGRSHP 155
+P G P G+ P P PG+ GG PG + P G RS
Sbjct: 93 PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPR 152
Query: 156 GGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGP------VQSH 209
PG P+G G G+PQ + PP +GP +S
Sbjct: 153 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSS 212
Query: 210 HGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP 248
P QGP P+ G Q P G+P PP
Sbjct: 213 QSPPGKPQGP-PPQGGNQ------PQGPPPPPGKPQGPP 244
Score = 38.5 bits (88), Expect = 0.006
Identities = 37/144 (25%), Positives = 53/144 (36%), Gaps = 7/144 (4%)
Query: 82 PRRPHPAARCLPLRPHRPTRRHRRPG--GFPLAWGSPQPAPRPAPGRSSALALAGGAAPG 139
P+ P P P P P + + P G G P P P + + + PG
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPG 95
Query: 140 VARAQRP-GGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAP 198
+ P GG+ + P PG P+G G G+R G+PQ + + +P
Sbjct: 96 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQG-GNRPQGPPPPGKPQGPPPQGDKSRSPRSP 154
Query: 199 PLTLEGPVQSHHGTPALTQGPQSP 222
P +GP P QGP P
Sbjct: 155 PGKPQGPPPQGGNQP---QGPPPP 175
Score = 38.5 bits (88), Expect = 0.006
Identities = 40/129 (31%), Positives = 53/129 (41%), Gaps = 11/129 (8%)
Query: 6 GSAQACPCQVPRAASTTWVPCQICGP-----RERHGPRTPGG--QLPGARRGPGPRRPAP 58
G Q P Q ++ S+ P + GP + GP P G Q P + G P+ P P
Sbjct: 197 GKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP 256
Query: 59 --LPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSP 116
P PP GS + R+ PG +P+ P P P P + + P A G P
Sbjct: 257 PGKPQGPPAQGGSKSQSARSPPG-KPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPA-GQP 314
Query: 117 QPAPRPAPG 125
Q PRP G
Sbjct: 315 QGPPRPPQG 323
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 61.6 bits (148), Expect = 7e-10
Identities = 77/261 (29%), Positives = 95/261 (36%), Gaps = 47/261 (18%)
Query: 13 CQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGP-GPRRPAPLPARPPGALGSVL 71
CQ + + P GPR GP P G+ GP GP P P P PPG G+
Sbjct: 22 CQSLQEETVRKGPAGDRGPRGERGPPGPPGR--DGEDGPTGPPGP-PGPPGPPGLGGNFA 78
Query: 72 RPLRAR-----PG----CRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRP 122
+ PG PR P AA G P G PA P
Sbjct: 79 AQYDGKGVGLGPGPMGLMGPRGPPGAA------------------GAPGPQGFQGPAGEP 120
Query: 123 A-PGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADGG 180
PG++ G A P PG +G HPG PG P G VGP G RG G
Sbjct: 121 GEPGQTGPAGARGPAGP-------PGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGL 173
Query: 181 RPQRTVRAAE----TRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVD 236
+ +R +G AP + E +GTP T P + ++GA P
Sbjct: 174 PGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGA-PGPAG 232
Query: 237 VRDSGGR--PLPPPDTLASAG 255
R S G P+ P + SAG
Sbjct: 233 ARGSDGSVGPVGPAGPIGSAG 253
Score = 50.1 bits (118), Expect = 2e-06
Identities = 67/237 (28%), Positives = 77/237 (32%), Gaps = 28/237 (11%)
Query: 30 GPRERHGP-RTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPA 88
G R HG PG P RGP A P P G+ G P P P
Sbjct: 571 GERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPP---GPDGNKGEPGVV 627
Query: 89 ARCLPLRPHRPTRR--HRRPGGFPLAWGSP-QPAPRPA---PGRSSALALAGGA-APGVA 141
P P+ R G P G +P R PGR A G APG A
Sbjct: 628 GAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPA 687
Query: 142 RAQRPGGSGGRSHPGGPGSPRGG----GTVGP-------GDRGPAAADGGRPQRTVRAAE 190
A G G + P GP PRG G VGP G G A G + +R + +
Sbjct: 688 GATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPK 747
Query: 191 TRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPP 247
P GPV + PA GP P G + GR PP
Sbjct: 748 GENGVVGP----TGPVGA--AGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPP 798
Score = 48.1 bits (113), Expect = 8e-06
Identities = 62/196 (31%), Positives = 71/196 (36%), Gaps = 48/196 (24%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRR---PAPLPARP-----PGALGSVLRPLRA----- 76
GP GPR P PGA PGP+ PA P P GA G P +A
Sbjct: 91 GPMGLMGPRGP----PGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGH 146
Query: 77 -----RPGCRPRRPHPAARCLPLRPHRP----TRRHRRPGGFPLAWGSP-------QPAP 120
RPG R AR P P P R H G G+P P
Sbjct: 147 PGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGE 206
Query: 121 RPAPGRSSALALAGG----AAPGVARAQRPGGS----------GGRSHPGGPGSPRGGGT 166
PG++ A L G APG A A+ GS G PG PG+P G
Sbjct: 207 NGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGE 266
Query: 167 VGP-GDRGPAAADGGR 181
+G G+ GPA G R
Sbjct: 267 IGAVGNAGPAGPAGPR 282
Score = 46.2 bits (108), Expect = 3e-05
Identities = 63/207 (30%), Positives = 76/207 (36%), Gaps = 22/207 (10%)
Query: 30 GPRERHGPRTPGGQL-----PG--ARRGPGPRRPAPLPARPPGALGSVLRP-LRARPGCR 81
GPR GP G++ PG +GP P PG G + P + PG R
Sbjct: 820 GPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSR 879
Query: 82 PRRPHPAARCLPLRPHRPTRRHRRPG--GFPLAWGSPQPAPRPAPGRSSALALAGGAAPG 139
R P P P PG G P A GSP APG + G P
Sbjct: 880 GERGLPGVAGAVGEPG-PLGIAGPPGARGPPGAVGSP--GVNGAPGEAGRDGNPGNDGPP 936
Query: 140 VARAQRPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADGGRPQRTVRAAETRGAAAAP 198
R +PG G R +PG G G GP G GPA G R + T + A A
Sbjct: 937 -GRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGE-TGPSGPVGPAGAVG 994
Query: 199 PLTLEGP--VQSHHGTPALTQGPQSPR 223
P GP ++ G P G + PR
Sbjct: 995 PRGPSGPQGIRGDKGEP----GEKGPR 1017
Score = 44.3 bits (103), Expect = 1e-04
Identities = 75/255 (29%), Positives = 86/255 (33%), Gaps = 70/255 (27%)
Query: 25 PCQICGPRERHG----PRTPGGQLPGARRG-PGPRRPAPL--PARPPGALGSVLRPLR-A 76
P + GPR G P G Q P G PG PA PA PPG G P +
Sbjct: 92 PMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPG 151
Query: 77 RPGCRPRRPHPAARCLPLRPHRP----TRRHRRPGGFPLAWGSP-------QPAPRPAPG 125
RPG R AR P P P R H G G+P P PG
Sbjct: 152 RPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPG 211
Query: 126 RSSALALAGG----AAPGVARAQR----------------------PGGSG--------G 151
++ A L G APG A A+ PG G G
Sbjct: 212 QTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVG 271
Query: 152 RSHPGGPGSPRG-------GGTVG-PGDRGPAAADGGRPQRTVRAAETRGAAAAP----P 199
+ P GP PRG G VG PG+ G G + AA G A AP P
Sbjct: 272 NAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAK-----GAAGLPGVAGAPGLPGP 326
Query: 200 LTLEGPVQSHHGTPA 214
+ GPV + T A
Sbjct: 327 RGIPGPVGAAGATGA 341
Score = 42.0 bits (97), Expect = 5e-04
Identities = 59/195 (30%), Positives = 65/195 (33%), Gaps = 28/195 (14%)
Query: 36 GPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRR--PHPAARCLP 93
GP P G PG R GP P A P GA G +PG + R P
Sbjct: 703 GPAGPRGS-PGERGEVGPAGPNGF-AGPAGAAG--------QPGAKGERGAKGPKGENGV 752
Query: 94 LRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRS 153
+ P P G P P PA R PG A P G G S
Sbjct: 753 VGPTGPVGAAGPAG--------PNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGIS 804
Query: 154 HPGGPGSPRG-GGTVGP-GDRGPAAADG-----GRPQRTVRAAETRGAAAAPPLTLEGPV 206
P GP P G G GP GD+GP G G P + A A P GP
Sbjct: 805 GPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGP- 863
Query: 207 QSHHGTPALTQGPQS 221
Q G P + P S
Sbjct: 864 QGLLGAPGILGLPGS 878
Score = 40.4 bits (93), Expect = 0.002
Identities = 72/254 (28%), Positives = 86/254 (33%), Gaps = 82/254 (32%)
Query: 37 PRTPGGQ----------LPGAR--RG----------PGPRRPAPLPAR--PPGALGSVLR 72
P TPG Q LPG+R RG PGP A P PPGA+GS
Sbjct: 858 PGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSP-- 915
Query: 73 PLRARPGCRPRRPHPAARCLPLRPHRPTRRHRR--PGGF-PL-AWGSPQP---------- 118
+ PG R +P P R +P + R PG P+ A G+P P
Sbjct: 916 GVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKH 975
Query: 119 ------APRPAPGRSSALALAGGAAPGVARAQR--PGGSGGRS----------------- 153
P G + A+ G + P R + PG G R
Sbjct: 976 GNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIA 1035
Query: 154 -HPGGPGSPRGGGTVGP----GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQS 208
H G G+P G GP G GPA DG T P + GP Q
Sbjct: 1036 GHHGDQGAPGSVGPAGPRGPAGPSGPAGKDG----------RTGHPGTVGPAGIRGP-QG 1084
Query: 209 HHGTPALTQGPQSP 222
H G PA GP P
Sbjct: 1085 HQG-PAGPPGPPGP 1097
Score = 37.0 bits (84), Expect = 0.017
Identities = 55/197 (27%), Positives = 63/197 (31%), Gaps = 54/197 (27%)
Query: 44 LPGARRGPGPRRPAPLPARPPGALGSV-LRPLRARPGCRPRRPHPAARCLPLRPHRPTRR 102
LPG PG P +P P GA G+ R L PG + + P
Sbjct: 314 LPGVAGAPGLPGPRGIPG-PVGAAGATGARGLVGEPGPAGSKGESGNKGEP--------- 363
Query: 103 HRRPGGFPLAWGSPQPAPRPAP----GRSSALALAGGAAPGVARAQRPGGSGGRSHPGGP 158
GS P P P G+ AG A P PG G R PG
Sbjct: 364 -----------GSAGPQGPPGPSGEEGKRGPNGEAGSAGP-------PGPPGLRGSPGSR 405
Query: 159 GSPRGGGTVG----PGDRGPAA--------ADGGRPQRTVRAAETRGAAAAP----PLTL 202
G P G G PG RG + D GRP RG +P P
Sbjct: 406 GLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEP-GLMGPRGLPGSPGNIGPAGK 464
Query: 203 EGPVQSHHGTPALTQGP 219
EGPV G P + P
Sbjct: 465 EGPV----GLPGIDGRP 477
Score = 37.0 bits (84), Expect = 0.017
Identities = 50/165 (30%), Positives = 54/165 (32%), Gaps = 29/165 (17%)
Query: 44 LPGARRGPGPRRPA-----------PLPARPPGALGSVLRPLRARPGCRPR------RPH 86
LPG R PGP A P PA G G+ P A P P +
Sbjct: 323 LPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRG 382
Query: 87 PAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPG--VARAQ 144
P P P PG L + PG A AG P R
Sbjct: 383 PNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPG 442
Query: 145 RPGGSGGRSHPGGPGS--PRG-GGTVG-------PGDRGPAAADG 179
PG G R PG PG+ P G G VG PG GPA A G
Sbjct: 443 EPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARG 487
Score = 36.6 bits (83), Expect = 0.023
Identities = 65/231 (28%), Positives = 79/231 (34%), Gaps = 35/231 (15%)
Query: 31 PRERHGPRTPGGQ-LPGARRGPGPRRPAPL--------PARPPGALGSVLRPLRARPGCR 81
P E P G + LPG R G PA P P G +GS A P
Sbjct: 204 PGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGS------AGPPGF 257
Query: 82 PRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAA-PGV 140
P P P + P G L S P PG + G A PGV
Sbjct: 258 PGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGV 317
Query: 141 ARAQRPGGSGGRSHPGGPGSPRGGGTVG-PGDRGPAAADGGRPQRTVRAAETRGAAAAPP 199
A A PG G R PG G+ G G G+ GPA + G + +A P
Sbjct: 318 AGA--PGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNK------GEPGSAGP- 368
Query: 200 LTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDS-GGRPLPPPD 249
+GP P+ +G + P A P +R S G R LP D
Sbjct: 369 ---QGP-----PGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGAD 411
Score = 36.2 bits (82), Expect = 0.030
Identities = 62/228 (27%), Positives = 73/228 (32%), Gaps = 48/228 (21%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPAR--PPGALGSVLRP-LRARPGCRPRRPH 86
GP GP G+ PG GPR P P G G V P + RPG
Sbjct: 427 GPAGVRGPNGDAGR-PGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPG------- 478
Query: 87 PAARCLPLRPHRPTRRHRRPG--GFPLAWG-SPQPAPRPAPGRSSALALAGGAAP-GVAR 142
P P PG GFP G + P G + G P G
Sbjct: 479 ---------PIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNG 529
Query: 143 AQRPGG----SGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAP 198
AQ P G GG+ G PG P G PG GPA G +R + G P
Sbjct: 530 AQGPPGPQGVQGGKGEQGPPGPPGFQGL--PGPSGPAGEVGKPGERGL-----HGEFGLP 582
Query: 199 PLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLP 246
PA +G + P + T P+ R G P P
Sbjct: 583 -------------GPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGP 617
Score = 33.5 bits (75), Expect = 0.19
Identities = 50/179 (27%), Positives = 57/179 (31%), Gaps = 19/179 (10%)
Query: 30 GPRERHGPRTPGGQLPGARRGP----GPRRPAPLPARPPGALGSVLRPLRARP-GCRPRR 84
GP +HG R G P GP GPR P+ P G G P P G +
Sbjct: 970 GPAGKHGNRGETG--PSGPVGPAGAVGPRGPSG----PQGIRGDKGEPGEKGPRGLPGLK 1023
Query: 85 PHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQ 144
H + LP H G P GS PA P S A G
Sbjct: 1024 GHNGLQGLP-----GIAGHHGDQGAP---GSVGPAGPRGPAGPSGPAGKDGRTGHPGTVG 1075
Query: 145 RPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLE 203
G G + H G G P G GP D G RA + R A + P E
Sbjct: 1076 PAGIRGPQGHQGPAGPPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAPSLRPKDYE 1134
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 60.1 bits (144), Expect = 2e-09
Identities = 75/239 (31%), Positives = 89/239 (37%), Gaps = 41/239 (17%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPR---RPAPLPARPPGALGSVLRPLRARPGCRPRRPH 86
G PRT Q P GP P RP+ P+R PG + P+ A+P +
Sbjct: 1078 GTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKD 1137
Query: 87 PAARCLPLR--PHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVAR-- 142
PA P R P RP RP P P A PAP R + +PGVAR
Sbjct: 1138 PAQPLEPKRPPPPRPVAPPTRPAP-PQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARRE 1196
Query: 143 AQRPGGSG-------GRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAA 195
+ P G GRS P SP+ G GP GPA RP RA G
Sbjct: 1197 MEAPKSPGTTRKDNIGRSQP----SPQ-AGLAGP---GPAGYSTARPTIPPRA----GVI 1244
Query: 196 AAPPLTLEGPVQSHHGTPA--LTQGPQSPRDGAQLGACTRPVDVRDSGGRP----LPPP 248
+AP QSH A LT QS G+ P ++ P LPPP
Sbjct: 1245 SAP--------QSHARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPP 1295
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 60.1 bits (144), Expect = 2e-09
Identities = 75/239 (31%), Positives = 89/239 (37%), Gaps = 41/239 (17%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPR---RPAPLPARPPGALGSVLRPLRARPGCRPRRPH 86
G PRT Q P GP P RP+ P+R PG + P+ A+P +
Sbjct: 1078 GTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKD 1137
Query: 87 PAARCLPLR--PHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVAR-- 142
PA P R P RP RP P P A PAP R + +PGVAR
Sbjct: 1138 PAQPLEPKRPPPPRPVAPPTRPAP-PQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARRE 1196
Query: 143 AQRPGGSG-------GRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAA 195
+ P G GRS P SP+ G GP GPA RP RA G
Sbjct: 1197 MEAPKSPGTTRKDNIGRSQP----SPQ-AGLAGP---GPAGYSTARPTIPPRA----GVI 1244
Query: 196 AAPPLTLEGPVQSHHGTPA--LTQGPQSPRDGAQLGACTRPVDVRDSGGRP----LPPP 248
+AP QSH A LT QS G+ P ++ P LPPP
Sbjct: 1245 SAP--------QSHARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPP 1295
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 59.3 bits (142), Expect = 3e-09
Identities = 69/218 (31%), Positives = 79/218 (36%), Gaps = 21/218 (9%)
Query: 16 PRAASTTWVPCQICGPRERHGPRTPGGQ--LPGARRGPGPRRPAPLPARPPGALGSVLRP 73
P+ + P + G R GP G+ +PG R PG P P P P G G RP
Sbjct: 377 PKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGP-PGPTGPKGEPGFTGRP 435
Query: 74 LRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQP-APRPAPGRSSALAL 132
PG LP +P R P G P G P P+ PG L
Sbjct: 436 --GGPGVAGALGQKGDLGLPGQPGL-----RGPSGIPGLQGPAGPIGPQGLPGLKGEPGL 488
Query: 133 AGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVG-PGDRGPAAADGGRPQRTVRAAE- 190
G PG RA PG +G PG PGSP G G PG GP A G + +
Sbjct: 489 PG--PPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHL 546
Query: 191 TRGAAAAPPLTLEGPVQ------SHHGTPALTQGPQSP 222
G L G Q S H TPA T SP
Sbjct: 547 PNGGVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSP 584
Score = 56.6 bits (135), Expect = 2e-08
Identities = 64/194 (32%), Positives = 74/194 (38%), Gaps = 26/194 (13%)
Query: 45 PGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHR 104
PG PGPR P PPG G +P +PG + P PA P
Sbjct: 79 PGPPGKPGPRGPPG----PPGFPG---KPGMGKPGLHGQ-PGPAGP-----PGFSRMGKA 125
Query: 105 RPGGFPLAWGSP-QPAPRPAPGRSSALALAGGAAP-------GVARAQRPGGSGGRSHPG 156
P G P G P QP R PG L G P G+ +PG G PG
Sbjct: 126 GPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPG 185
Query: 157 GPGSPRGGGTVG-PGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPAL 215
G P G G PGDRG D G Q + A +G A PP L GP + G P L
Sbjct: 186 FQGEPGPQGEPGPPGDRG-LKGDNGVGQPGLPGAPGQGGAPGPP-GLPGP--AGLGKPGL 241
Query: 216 TQGPQSPRDGAQLG 229
P +P D + G
Sbjct: 242 DGLPGAPGDKGESG 255
Score = 53.5 bits (127), Expect = 2e-07
Identities = 71/230 (30%), Positives = 79/230 (34%), Gaps = 49/230 (21%)
Query: 30 GPRERHGPR----TPGGQLPGARRGPGPRRPAPLP----ARPPGALGSVLRP----LRAR 77
GPR GP PG PG PGP P A PPG G V P LR
Sbjct: 86 GPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGE 145
Query: 78 PGCR-----------PRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGR 126
PG R P P P+ +P +P + P GF G P P P P
Sbjct: 146 PGIRGDQGLRGPPGPPGLPGPSGITIPGKPG--AQGVPGPPGFQ---GEPGPQGEPGPPG 200
Query: 127 SSAL-------------ALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVG----P 169
L A G APG P G G G PG+P G G P
Sbjct: 201 DRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVP 260
Query: 170 GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGP 219
G RG A G + V GAA P +GP G P T+GP
Sbjct: 261 GPRGEPGAVGPKGPPGVDGVGVPGAAGLP--GPQGP-SGAKGEPG-TRGP 306
Score = 44.7 bits (104), Expect = 8e-05
Identities = 70/226 (30%), Positives = 80/226 (35%), Gaps = 36/226 (15%)
Query: 25 PCQICGPRERHG-------PRTPGGQLPGARRGPGPRRPA-----PLPARPPGALGSVLR 72
P + GPR G P G +PGA PGP+ P+ P PPG +G
Sbjct: 256 PPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGY 315
Query: 73 PLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPG-GFPLAWGSPQPAPRPA--PGRSSA 129
+ PG + R PA L PG P G P P A PGR
Sbjct: 316 GMPGLPGPKGDR-GPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGP 374
Query: 130 LALAGGA-------APGVARAQRPGGSGGRSHPGGPGSPRGGGTVG-PGDRGPAAADG-- 179
G A PG+ Q P G G+ PG PG G G PG GP G
Sbjct: 375 PGPKGEAGPGGPPGVPGIRGDQGPSGLAGK--PGVPGERGLPGAHGPPGPTGPKGEPGFT 432
Query: 180 GRP--QRTVRAAETRGAAAAPPLT-LEGPVQSHHGTPALTQGPQSP 222
GRP A +G P L GP G P L QGP P
Sbjct: 433 GRPGGPGVAGALGQKGDLGLPGQPGLRGP----SGIPGL-QGPAGP 473
Score = 36.2 bits (82), Expect = 0.030
Identities = 54/192 (28%), Positives = 62/192 (32%), Gaps = 25/192 (13%)
Query: 36 GPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLR 95
GPR G G G AP+ P G V P R G P LPL
Sbjct: 23 GPRASSGGGAGGAAGY-----APVKYIQPMQKGPVGPPFREGKGQYLEMP------LPLL 71
Query: 96 PHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHP 155
P PG +P PR PG G PG+ P G G S
Sbjct: 72 PMDLKGEPGPPG---------KPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRM 122
Query: 156 GGPGSPRGGGTVG-PGDRGPAAADGGRPQRTVRAAETRGAAAAPP-LTLEGP--VQSHHG 211
G G P G VG PG G G R + +R P +T+ G Q G
Sbjct: 123 GKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPG 182
Query: 212 TPALTQGPQSPR 223
P QG P+
Sbjct: 183 PPGF-QGEPGPQ 193
Score = 36.2 bits (82), Expect = 0.030
Identities = 61/225 (27%), Positives = 69/225 (30%), Gaps = 49/225 (21%)
Query: 37 PRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRP 96
P PG G GP P P P PG G P P P P + P
Sbjct: 213 PGLPGAPGQGGAPGP-PGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGP 271
Query: 97 HRPTRRHRRPG----GFPLAWGSP----------QPAPRPAPGRSSALALAGGAAPGVAR 142
P PG G P A G P +P R PG PG
Sbjct: 272 KGP------PGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKG 325
Query: 143 AQRPGGS----GGRSHPGGPGSPRGGGTVG-------------PGDRGP-----AAADGG 180
+ P G G R PG G P G G PG RGP A GG
Sbjct: 326 DRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGG 385
Query: 181 RP-QRTVRAAE-TRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPR 223
P +R + G A P + E + HG P GP P+
Sbjct: 386 PPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPP----GPTGPK 426
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 58.2 bits (139), Expect = 7e-09
Identities = 71/245 (28%), Positives = 85/245 (34%), Gaps = 35/245 (14%)
Query: 36 GPRTPGGQLPGARRGPGPRRP--APLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLP 93
GP+ GQ PG + PG + P AP P G G+ R L PG R P
Sbjct: 921 GPKGDAGQ-PGEKGSPGAQGPPGAPGPLGIAGITGA--RGLAGPPGMPGPRGSPG----- 972
Query: 94 LRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAG-----GAAPGVARAQRPGG 148
P +PG L+ P P+ PG + G G+ R PGG
Sbjct: 973 --PQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGG 1030
Query: 149 SGGRSH------PGGPGSPRGGGTVGP----GDR------GPAAADGGRPQRTVRAAE-T 191
G R PG PG P G VGP GDR GPA A G R +
Sbjct: 1031 KGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP 1090
Query: 192 RGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGG-RPLPPPDT 250
RG ++ H G P P SP Q GA P G P PP
Sbjct: 1091 RGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGK 1150
Query: 251 LASAG 255
++G
Sbjct: 1151 DGTSG 1155
Score = 50.8 bits (120), Expect = 1e-06
Identities = 52/162 (32%), Positives = 55/162 (33%), Gaps = 22/162 (13%)
Query: 30 GPRERHGPRTPGGQL-PGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPA 88
GP + G R G P GP R AP P P G G R G + R P
Sbjct: 1056 GPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGE--RGAAGIKGHRGFPG 1113
Query: 89 ARCLPLRPHRPTRRHRRPGGFPLAWGSPQPA-------PRPAPGRSSALALAGGAAPGVA 141
P P P G A GSP PA P PG+ G P
Sbjct: 1114 NPGAPGSPG--------PAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGP 1165
Query: 142 RAQRP--GGSGGRSHPGGPGSPRGGGTVGP--GDRGPAAADG 179
R R G G HPG PG P G GP G G AA G
Sbjct: 1166 RGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAG 1207
Score = 49.7 bits (117), Expect = 3e-06
Identities = 80/267 (29%), Positives = 93/267 (34%), Gaps = 51/267 (19%)
Query: 13 CQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPG-PRRP-APLPARPPGALGSV 70
C P A T P GP+ G P G +PG PG P +P +P PPG S
Sbjct: 88 CPQPPTAPTR--PPNGQGPQGPKGDPGPPG-IPGRNGDPGIPGQPGSPGSPGPPGICESC 144
Query: 71 -LRPLRARP-------------GCRPRRPHPAARCLPLRPHRPTRRHRRPG--GFPLAWG 114
P P G P PA P P P PG G P G
Sbjct: 145 PTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAG---PPGPPGPPGTSGHPGSPGSPGYQG 201
Query: 115 SP----QPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVG-P 169
P Q P PG A+ +G A + RPG G R PG PG G G P
Sbjct: 202 PPGEPGQAGPSGPPGPPGAIGPSGPAGKD-GESGRPGRPGERGLPGPPGIKGPAGIPGFP 260
Query: 170 GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSP------- 222
G +G DG + +G AP L E + +G P GP P
Sbjct: 261 GMKGHRGFDGRNGE--------KGETGAPGLKGENGLPGENGAP----GPMGPRGAPGER 308
Query: 223 -RDGAQLGACTRPVD-VRDSGGRPLPP 247
R G A R D R S G+P PP
Sbjct: 309 GRPGLPGAAGARGNDGARGSDGQPGPP 335
Score = 48.9 bits (115), Expect = 4e-06
Identities = 57/170 (33%), Positives = 64/170 (37%), Gaps = 34/170 (20%)
Query: 33 ERHGPRTPGGQLPGARRGPGPRRPAPL--------PARPPGALGSVLRPLRARPGCRPRR 84
E P PG PG PGP PA PA P GA G P +R P+
Sbjct: 1036 ENGSPGAPGA--PGHPGPPGPVGPAGKSGDRGESGPAGPAGAPG----PAGSRGAPGPQG 1089
Query: 85 PHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPG--VAR 142
P R + HR G P A GSP PA G+ A+ G A P V
Sbjct: 1090 PRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPA-----GQQGAIGSPGPAGPRGPVGP 1144
Query: 143 AQRPGGSGGRSHPG--GPGSPRGG----GTVG-------PGDRGPAAADG 179
+ PG G HPG GP PRG G+ G PG GP A G
Sbjct: 1145 SGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPG 1194
Score = 46.2 bits (108), Expect = 3e-05
Identities = 83/280 (29%), Positives = 97/280 (34%), Gaps = 63/280 (22%)
Query: 31 PRERHGPRTPGGQLPGARRGPGPRRP-----APLPARPPGALGSVLRPLRARPGCR---- 81
P ER P G PG R G GP P A P PPGA G+ L+ PG R
Sbjct: 680 PGERGPPGLAGA--PGLRGGAGPPGPEGGKGAAGPPGPPGAAGTP--GLQGMPGERGGLG 735
Query: 82 -------------------PRRPHPAARCLPLRPHRPTRR--HRRPGGFPLAWGSPQPA- 119
P + P P+ P P + + GG P G P A
Sbjct: 736 SPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAP---GLPGIAG 792
Query: 120 PRPAPGRSSALALAGGAA-PGV-ARAQRPGGSGGRSHPG-----GP----GSPRGGGTVG 168
PR +PG G A PG + PGG G R PG GP G P G G G
Sbjct: 793 PRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAG 852
Query: 169 P-------GDRGPAAADG--GRP-QRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQG 218
P G+RG G G P R + PP P + PA G
Sbjct: 853 PPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG 912
Query: 219 -PQSPRDGAQLGACTRPVDVRDSGGRPLPP--PDTLASAG 255
P SP G +P + + S G PP P L AG
Sbjct: 913 APGSPGVSGPKGDAGQPGE-KGSPGAQGPPGAPGPLGIAG 951
Score = 45.4 bits (106), Expect = 5e-05
Identities = 68/215 (31%), Positives = 75/215 (34%), Gaps = 29/215 (13%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP--PGALGSVLRP-LRARPGCRPRRPH 86
G R G R GQ PG PGP A P P G +G P PG R P
Sbjct: 318 GARGNDGARGSDGQ-PGP---PGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGE-PG 372
Query: 87 PAARCLPLRPHRPTRRHRRPGG--------FPLAWGSPQPAPRPAP-GRSSALALAGGAA 137
P P P + PGG P A G P P G + A L GGA
Sbjct: 373 PQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAG 432
Query: 138 -PGVARAQ-RPGGSGGRSHPGGPGSPRGGGTVG----PGDRGPAAADGGRPQRTVRAAET 191
PG A+ PG G R G PG P G G PG+ G G +R A
Sbjct: 433 EPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGER--GAPGF 490
Query: 192 RGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGA 226
RG A + E G P GP PR A
Sbjct: 491 RGPAGPNGIPGEKGPAGERGAP----GPAGPRGAA 521
Score = 45.4 bits (106), Expect = 5e-05
Identities = 61/211 (28%), Positives = 72/211 (34%), Gaps = 34/211 (16%)
Query: 30 GPRERHGPRTPG-GQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPA 88
G ER P G G PG PG PA PPG G ++ R PG P
Sbjct: 823 GKGERGAPGEKGEGGPPGVAGPPGGSGPAG----PPGPQG--VKGERGSPGGPGAAGFPG 876
Query: 89 ARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGG 148
AR LP P + PG P GSP P P ++ + G + A +PG
Sbjct: 877 ARGLP----GPPGSNGNPGP-PGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGE 931
Query: 149 SGGRSHPGGPGSPRGGGTVG-------------PGDRGPAAADGGRPQRTVRAAETRGAA 195
G G PG+P G G PG RG G + + A
Sbjct: 932 KGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGE 991
Query: 196 AAPPLTLEGPVQSHHGTPALTQGPQSP-RDG 225
PP GP G P L P RDG
Sbjct: 992 RGPP----GP----QGLPGLAGTAGEPGRDG 1014
Score = 45.1 bits (105), Expect = 6e-05
Identities = 57/164 (34%), Positives = 60/164 (36%), Gaps = 25/164 (15%)
Query: 31 PRERHGPRTPGGQLPGARRGPGPRRPAPLPARP--PGALGSVLRPLRARPGCRPRRPHPA 88
P R G PG GA+ PGPR P PGA G + PG P
Sbjct: 425 PGLRGGAGEPGKN--GAKGEPGPRGERGEAGIPGVPGAKGEDGKD--GSPG------EPG 474
Query: 89 ARCLP-LRPHRPTRRHRRPGGFPLAWGSPQPA-PRPAPGRSSALALAGGAAPGVARAQRP 146
A LP R R P G G PA R APG + AG PG R P
Sbjct: 475 ANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAG--EPG--RDGVP 530
Query: 147 GGSGGRSHPGGPGSPRGGGTVGP-------GDRGPAAADGGRPQ 183
GG G R PG PG P G GP G GP G R Q
Sbjct: 531 GGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQ 574
Score = 44.3 bits (103), Expect = 1e-04
Identities = 56/184 (30%), Positives = 68/184 (36%), Gaps = 43/184 (23%)
Query: 30 GPRERHGPRTPGGQL--PGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHP 87
GPR GP+ G+ PGA G R P P P PG G+ PG R +P
Sbjct: 966 GPRGSPGPQGVKGESGKPGANGLSGERGP-PGPQGLPGLAGTA-----GEPG---RDGNP 1016
Query: 88 AARCLPLRPHRPTRR-HRRPGGFPLAWGSPQPAPRPAP----------GRSSALALAGGA 136
+ LP R P + R G P A G+P P P G S AG
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAP 1076
Query: 137 APGVARA----QRP----------GGSGGRSHPGGPGSPRGGGTVGP-------GDRGPA 175
P +R Q P G +G + H G PG+P G+ GP G GPA
Sbjct: 1077 GPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPA 1136
Query: 176 AADG 179
G
Sbjct: 1137 GPRG 1140
Score = 41.6 bits (96), Expect = 7e-04
Identities = 67/236 (28%), Positives = 83/236 (35%), Gaps = 49/236 (20%)
Query: 30 GPRERHGPRTPGGQ--------LPGARRGPGP---RRPAPLPARPP-----------GAL 67
GP GP P G+ PG R PGP + PA +P P G
Sbjct: 216 GPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEK 275
Query: 68 GSVLRP-LRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPG--------GFPLAWGSP-Q 117
G P L+ G P P+ P RPG G A GS Q
Sbjct: 276 GETGAPGLKGENGLPGENGAPG----PMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQ 331
Query: 118 PAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVG-PGDRGPAA 176
P P P P ++ + GA V A PG +G G PG G G PG G
Sbjct: 332 PGP-PGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGING 390
Query: 177 ADGGR----PQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSP-RDGAQ 227
+ GG+ P A GA P GP + +G P L G P ++GA+
Sbjct: 391 SPGGKGEMGPAGIPGAPGLMGARGPP-----GPAGA-NGAPGLRGGAGEPGKNGAK 440
Score = 41.2 bits (95), Expect = 0.001
Identities = 65/229 (28%), Positives = 76/229 (33%), Gaps = 50/229 (21%)
Query: 33 ERHGPRTPGGQLPGARRGP-GPRRPAPLPARPPGALGSVLRP----LRARPGCRPRRPHP 87
ER GP PG Q P + G GP+ P P P P G G P L+ PG
Sbjct: 595 ERGGPGGPGPQGPPGKNGETGPQGP-PGPTGPGGDKGDTGPPGPQGLQGLPGT------- 646
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSP-QPAPRPAPGRSSALALAGGAAPGVARAQRP 146
GG P G P +P P+ G A GA G A P
Sbjct: 647 -------------------GGPPGENGKPGEPGPKGDAG-------APGAPGGKGDAGAP 680
Query: 147 GGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADG-----GRPQRTVRAAETRGAAAAPPL 200
G G G PG G G GP G +G A G G P E G + P
Sbjct: 681 GERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPK 740
Query: 201 TLEGPV--QSHHGTPALTQGPQSPRDG-AQLGACTRPVDVRDSGGRPLP 246
+G G P GP+ P G +P D + G LP
Sbjct: 741 GDKGEPGGPGADGVPG-KDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLP 788
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 58.2 bits (139), Expect = 7e-09
Identities = 65/235 (27%), Positives = 81/235 (34%), Gaps = 38/235 (16%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGP---------RRPAPLPARPPGALGSVLRPLRARPGC 80
GP + G + G PG +GP P R P P PP G+ + PG
Sbjct: 203 GPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPG- 261
Query: 81 RPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGG----- 135
+P+ P P P P P + P G P GS + R PG+ GG
Sbjct: 262 KPQGPPPQGGNKPQGPPPPGK----PQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQG 317
Query: 136 --AAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRG 193
PG + P G P PG P+G G A + G+PQ G
Sbjct: 318 PPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQ---------G 368
Query: 194 AAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP 248
+GP G P Q PQ+P G G P GGRP PP
Sbjct: 369 PPQQEGNNPQGPPPPAGGNP---QQPQAPPAGQPQGPPRPP-----QGGRPSRPP 415
Score = 56.2 bits (134), Expect = 3e-08
Identities = 66/240 (27%), Positives = 86/240 (35%), Gaps = 36/240 (15%)
Query: 30 GPRERHGPRTPGG--QLPGARRGPGPRRPAPLPARPPG-ALGSVLRPLRARPGCRPRRPH 86
G + GP +P G Q P + G P+ P P P +P G +P P +P+ P
Sbjct: 43 GGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 102
Query: 87 PAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGG------AAPGV 140
P + P +P G P G+ P P PG+ GG PG
Sbjct: 103 PQGD----KSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 158
Query: 141 ARAQRPGGS----GGRSHPGGP-GSPRGGGTVGPG-------DRGPAAADGGRPQRTVRA 188
+ P G RS PG P G P GG G +GP G +PQ
Sbjct: 159 PQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 218
Query: 189 AETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP 248
+ +G PP + QS P QGP P+ G Q P G+P PP
Sbjct: 219 GKPQG----PPPQGDNKSQSARSPPGKPQGP-PPQGGNQ------PQGPPPPPGKPQGPP 267
Score = 50.8 bits (120), Expect = 1e-06
Identities = 58/235 (24%), Positives = 79/235 (33%), Gaps = 22/235 (9%)
Query: 30 GPRERHGPRTPGGQLPGARRGP--------GPRRPAPLPARPPGALGSVLRPLRARPGCR 81
GP + G + G PG +GP PR P P PP G+ + PG +
Sbjct: 80 GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG-K 138
Query: 82 PRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGG------ 135
P+ P P P P P + P G P + + R PG+ GG
Sbjct: 139 PQGPPPQGGNKPQGPPPPGK----PQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGP 194
Query: 136 -AAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQ-RTVRAAETRG 193
PG + P G P PG P+G G A + G+PQ +
Sbjct: 195 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQ 254
Query: 194 AAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP 248
PP +GP P P P+ G ++ R G+P PP
Sbjct: 255 GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGG-SKSRSSRSPPGKPQGPP 308
Score = 37.0 bits (84), Expect = 0.017
Identities = 37/152 (24%), Positives = 46/152 (30%), Gaps = 12/152 (7%)
Query: 106 PGGFPLAWGSPQPAPRPAPGRSSALALAGG-------AAPGVARAQRPGGSGGRSHPGGP 158
P G P G+ P PG+ GG PG + P G P P
Sbjct: 36 PQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 95
Query: 159 GSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQG 218
G P+G G R P + G + PP +GP P QG
Sbjct: 96 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP---QG 152
Query: 219 PQSP--RDGAQLGACTRPVDVRDSGGRPLPPP 248
P P G + R G+P PP
Sbjct: 153 PPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPP 184
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 57.4 bits (137), Expect = 1e-08
Identities = 71/228 (31%), Positives = 83/228 (36%), Gaps = 35/228 (15%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPR---RPAPLPARPPGALGSVLRPLRARPGCRPRRPH 86
G PRT Q P GP P RP+ P+R PG + P+ A+P +
Sbjct: 1039 GTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKD 1098
Query: 87 PAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRP 146
PA P RP P RP P PQ P P+ RS A AP R
Sbjct: 1099 PAQPLEPKRPPPP-----RPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGAPKSPGTTRK 1153
Query: 147 GGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPV 206
GRS P SP+ G GP GPA RP RA G +AP
Sbjct: 1154 DNI-GRSQP----SPQ-AGLAGP---GPAGYSTARPTIPPRA----GVISAP-------- 1192
Query: 207 QSHHGTPA--LTQGPQSPRDGAQLGACTRPVDVRDSGGRP----LPPP 248
QSH A LT QS G+ P ++ P LPPP
Sbjct: 1193 QSHARASAGRLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSSLPPP 1240
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 56.2 bits (134), Expect = 3e-08
Identities = 75/262 (28%), Positives = 86/262 (32%), Gaps = 40/262 (15%)
Query: 16 PRAASTTWVPCQI-CGPRERHGPRTPGGQLPGARRGPGPRRP--APLP--ARPPGALGSV 70
P+ A T P I P + P P P + GP P AP P A PP G
Sbjct: 918 PKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGP 977
Query: 71 LRP----LRARPGCRPRRPH--PAARCLPLRPHRPTRRHRRPGG------FPLAWGSPQP 118
P P P P PA P P P G FP +P
Sbjct: 978 ATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPA 1037
Query: 119 APRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAAD 178
A P+P S A AP A P GG + P G+P P +G A
Sbjct: 1038 ATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATP 1097
Query: 179 GGRPQRTVRAA---ETRGAAAAPPLTLEGPVQSHHG---TPALTQGPQSPRDGAQL---- 228
+ AA +G A PP H G TPA T P SP+ G
Sbjct: 1098 SPKGAPMPPAATPPSPKGGLATPP---------HKGAPTTPAAT--PPSPKGGLATPPPK 1146
Query: 229 GACTRPVDVRDS--GGRPLPPP 248
GA T P S GG PPP
Sbjct: 1147 GAPTTPAATPPSPKGGLATPPP 1168
Score = 51.2 bits (121), Expect = 9e-07
Identities = 62/229 (27%), Positives = 76/229 (33%), Gaps = 28/229 (12%)
Query: 52 GPRRPAPLPARPPGALGSVLRPLRARPGCR--PRRPHPAARCLPLRPHRPTRRHRRPGGF 109
GP PAP A S + RA P + P P P P P P G
Sbjct: 899 GPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKG-----APTPPAATPPSPKGG 953
Query: 110 PLA----WGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGG 165
P W PA P + + AP A P GG + P G+P
Sbjct: 954 PATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPA 1013
Query: 166 TVGPGDRG-PAAADGGRPQRTVRAA---ETRGAAAAPPLTLEGPVQSHHGTPALTQGPQS 221
P +G PAA + T AA +G+ AA PL P P+ GP +
Sbjct: 1014 VTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPAT 1073
Query: 222 PRDGAQLGACTRPVDVRDS----------GGRPLPPPDTLASAGDFLCT 260
P + GA T P S G P+PP T S L T
Sbjct: 1074 P---SLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLAT 1119
Score = 50.8 bits (120), Expect = 1e-06
Identities = 79/290 (27%), Positives = 96/290 (33%), Gaps = 52/290 (17%)
Query: 6 GSAQACPCQVPRAASTTWVPCQICGPRERHGPRTP---GGQLPGARRGPGPR-------- 54
GS A P +P+ A TT P P + GP TP G P A P P+
Sbjct: 1045 GSPAATP--LPKGAPTT--PAATL-PSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSP 1099
Query: 55 RPAPLP--ARPPGALGSVLRPLR----ARPGCRPRRPHPAARCLPLR--PHRPTRRHRRP 106
+ AP+P A PP G + P P P P P + P P P
Sbjct: 1100 KGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSP 1159
Query: 107 GG---FPLAWGSPQ-PAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPR 162
G P G+P PA P + + AP A P GG + P G+P
Sbjct: 1160 KGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPT 1219
Query: 163 ---------GGGTVGPGDRG--------PAAADGGRPQRTVRAAETRGAAAAPPLTLEGP 205
GG P +G P + GG + A T AA P L
Sbjct: 1220 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLA 1279
Query: 206 VQSHHGTP-ALTQGPQSPRDGAQL----GACTRPVDVRDS--GGRPLPPP 248
H G P P SP+ G GA T P S G PPP
Sbjct: 1280 TPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPP 1329
Score = 40.4 bits (93), Expect = 0.002
Identities = 58/229 (25%), Positives = 81/229 (35%), Gaps = 27/229 (11%)
Query: 16 PRAASTTWVPCQICGPRERHGPRTP---GGQLPGARRGPGPRRPAPLPARPPGALGSVLR 72
P+ A T P P + P TP G P A P P+ LPA P + G
Sbjct: 1306 PKGAPT---PPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTT 1362
Query: 73 PLRARPGCRPRRPHPAARCLP-LRPHRPTRRHR--RPGGFPLAWG----SPQPAPRPAPG 125
P ++ G P P+ + P + P P R P G P + SP+ AP
Sbjct: 1363 P-SSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVT 1421
Query: 126 RSSALALAGG-----AAPGVARAQRPGGS---GGRSHPGGPGSPRGGGTVGPGDRGPAA- 176
R A + G A V+ + P S GG + P G P P + P A
Sbjct: 1422 REGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAP 1481
Query: 177 ---ADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSP 222
A P++ GA P + P + TP+ + P +P
Sbjct: 1482 KQVATSSSPKKAPATPAPMGAPTLPAVIPSSP-KEVPATPSSRRDPIAP 1529
Score = 35.0 bits (79), Expect = 0.066
Identities = 65/272 (23%), Positives = 85/272 (31%), Gaps = 43/272 (15%)
Query: 16 PRAASTTWVPCQICGPRERHGPR----TPGGQLPGARRGPGPRRPAPLPARPPGALGSVL 71
P AA+ + + P + P TP G P P P A PP GS
Sbjct: 1266 PPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPG 1325
Query: 72 RPLRARPGCRPRRPHPAARCLPLRPHR-------PTRRHRRPGGFPLA-----WGSPQPA 119
P P P+ + P P PT + G P A G P
Sbjct: 1326 TPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMT 1385
Query: 120 PRPAPGRSSALALAGG--AAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAA- 176
P P+P R A+ G +P V + P P + G T GD P A
Sbjct: 1386 P-PSPKRGPAIPSPKGDPTSPAVIPL------SPKKAPATPVTREGAATPSKGDLTPPAV 1438
Query: 177 ------------ADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRD 224
A G P + A PP E P T + + ++P
Sbjct: 1439 TPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPK--KAPAT 1496
Query: 225 GAQLGACTRPVDVRDSGGRPLPPPDTLASAGD 256
A +GA T P + S P P T +S D
Sbjct: 1497 PAPMGAPTLPAVIPSS---PKEVPATPSSRRD 1525
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 55.8 bits (133), Expect = 4e-08
Identities = 78/248 (31%), Positives = 86/248 (34%), Gaps = 56/248 (22%)
Query: 30 GPRERHGPRTPG--GQLPGARRGPG-PRRPAPL-PARPPGALGSVLRPLRARPGCRPRRP 85
G R GP PG G PG PG P P P P PPG G PG
Sbjct: 1403 GDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPG------ 1456
Query: 86 HPAARCLPLRPHRPTRRHRR--PG--------GFPLAWGSP-QPAPRPAPGRSSALALAG 134
LP +P P + R PG GFP G + R PG + + L G
Sbjct: 1457 ------LPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPG 1510
Query: 135 GAA-PGVARAQRPGGSGGRS-HPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETR 192
A PG + P G GR G PG P VGP GP G V A R
Sbjct: 1511 VAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKG-----DVGPAGPR 1565
Query: 193 GAAAAPPLTLEGPVQSHHGTPALT----QGPQ-SPRDGAQLGACTRPVDVRDSG------ 241
GA VQ G P L GP+ P D +G R DSG
Sbjct: 1566 GATG---------VQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKG 1616
Query: 242 --GRPLPP 247
GRP PP
Sbjct: 1617 DPGRPGPP 1624
Score = 53.5 bits (127), Expect = 2e-07
Identities = 73/246 (29%), Positives = 86/246 (34%), Gaps = 50/246 (20%)
Query: 25 PCQICGPRERHGPRTPGGQ--LPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPG--- 79
P G + GP P G LPG PG + P P P G G P RPG
Sbjct: 1487 PLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPG-PTGRQGEKGEP--GRPGDPA 1543
Query: 80 -CRPRRPHPAARCLPLRPHRP-----TRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALA 133
P P + P P + R P G L P P+ PG + L
Sbjct: 1544 VVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPG---DPGPKGDPGDRGPIGLT 1600
Query: 134 GGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGP----------GDRGPAAADGGRPQ 183
G A P PG SG G PG P G VGP GD GP D G P
Sbjct: 1601 GRAGP-------PGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGP-PGDPGLPG 1652
Query: 184 RTVRAAETRGAAAAPPLTLEGPV--QSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSG 241
+ A RG AP + GPV + G P + R+G+ + P R
Sbjct: 1653 K----AGERGLRGAP--GVRGPVGEKGDQGDPG-----EDGRNGSP--GSSGPKGDRGEP 1699
Query: 242 GRPLPP 247
G P PP
Sbjct: 1700 GPPGPP 1705
Score = 53.1 bits (126), Expect = 2e-07
Identities = 62/199 (31%), Positives = 72/199 (36%), Gaps = 35/199 (17%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP-----PGALGSVLRPLRARPGCRPRR 84
G R GP+ P G G R PGP A P +P PG G V RPG R R
Sbjct: 2006 GDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGE--AGRPGERGER 2063
Query: 85 PHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQ 144
+ R + P G P G+P P P P S PG++ Q
Sbjct: 2064 GE--------KGERGEQGRDGPPGLP---GTPGPPGPPGPKVS-----VDEPGPGLSGEQ 2107
Query: 145 RPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLE 203
P G G G P G GP GDRG G R + RG P L E
Sbjct: 2108 GPPGL-----KGAKGEPGSNGDQGPKGDRGVPGIKGDRGE-----PGPRGQDGNPGLPGE 2157
Query: 204 GPVQSHHGTPALTQGPQSP 222
+ G P L QGP+ P
Sbjct: 2158 RGMAGPEGKPGL-QGPRGP 2175
Score = 50.1 bits (118), Expect = 2e-06
Identities = 78/274 (28%), Positives = 97/274 (35%), Gaps = 44/274 (16%)
Query: 13 CQVPRAASTTWVPCQICGPRERHGPRTPG-----GQL--PGARRGPGPRRPAPLPARPPG 65
CQ PC + P+ + G PG GQ+ PG PG R AP P PPG
Sbjct: 1234 CQASFTTQPRPEPCPVYCPKGQKGE--PGEMGLRGQVGPPGDPGLPG-RTGAPGPQGPPG 1290
Query: 66 ALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSP-QPAPRPAP 124
+ + + R PG R P P P P + G P G P + PR
Sbjct: 1291 S--ATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSP--GLPGPRGDPGERGPRGPK 1346
Query: 125 GRSSALA-LAGGAAPGV-ARAQRPGGSGG------------RSHPGGPGSPRGG------ 164
G A + GG PG+ R PG SG R PG PG+ G
Sbjct: 1347 GEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRG 1406
Query: 165 --GTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSP 222
G GPG+ G A + G P + + PP S G P L P SP
Sbjct: 1407 ERGPPGPGEGGIAPGEPGLP--GLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSP 1464
Query: 223 RDGAQLGACTRPVDVRDSGGRPLPPPDTLASAGD 256
+ G P + G R P P L AG+
Sbjct: 1465 GEQGPRGP---PGAIGPKGDRGFPGP--LGEAGE 1493
Score = 49.7 bits (117), Expect = 3e-06
Identities = 72/248 (29%), Positives = 86/248 (34%), Gaps = 46/248 (18%)
Query: 28 ICGPRERHGPRTPGGQ--LPGARRGPGPRRPAPL--PARPPGALGSVLRPLRARPGCRPR 83
I G R GPR G LPG R GP L P PPG +G PG P
Sbjct: 2136 IKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGG-----HGDPG-PPG 2189
Query: 84 RPHPAARCLPLRPHRPTRRHRRPG----------------GFPLAWGSPQPA----PRPA 123
P A P P P+ PG G P G P P+ P+ +
Sbjct: 2190 APGLAG---PAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLP---GPPGPSGLVGPQGS 2243
Query: 124 PGRSSALALAGG-AAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADGGR 181
PG + G APG R G SG G PG P G GP G +G G
Sbjct: 2244 PGLPGQVGETGKPGAPG-----RDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAP 2298
Query: 182 PQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPR-DGAQLGACTRPVDVRDS 240
Q V +G AP L G + G +G PR + + G P D +
Sbjct: 2299 GQAVVGLPGAKGEKGAPG-GLAGDLVGEPGAKG-DRGLPGPRGEKGEAGRAGEPGDPGED 2356
Query: 241 GGRPLPPP 248
G + P P
Sbjct: 2357 GQKGAPGP 2364
Score = 43.1 bits (100), Expect = 2e-04
Identities = 69/223 (30%), Positives = 80/223 (35%), Gaps = 25/223 (11%)
Query: 15 VPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPL 74
+P A P Q GPR G P G+ A GP R P P PPG GSV P
Sbjct: 2396 LPGAPGVVGFPGQT-GPRGEMGQPGPSGERGLA--GPPGREGIPGPLGPPGPPGSVGPP- 2451
Query: 75 RARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAG 134
G + + P R R R G P Q PR G +
Sbjct: 2452 -GASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRP-----GQEGPRGLTGPPGSRG-ER 2504
Query: 135 GAAPGVARAQRPGGSGGRSHPGGPGSPRGG----GTVGP----GDRGPAAADGGRPQRTV 186
G V A G G + GP PRG G GP GD+GP D G P
Sbjct: 2505 GEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGP-RGDNGDPGDKG 2563
Query: 187 RAAE--TRGAAAAPPLT-LEGPVQSHHGTPALTQGPQSP-RDG 225
E +G+A P L L GP Q G + P SP +DG
Sbjct: 2564 SKGEPGDKGSAGLPGLRGLLGP-QGQPGAAGIPGDPGSPGKDG 2605
Score = 42.0 bits (97), Expect = 5e-04
Identities = 51/165 (30%), Positives = 62/165 (37%), Gaps = 21/165 (12%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLR-ARPGCRPRRPHPA 88
GP G R P G L G R G + A P+ P GA G P R PG R + P
Sbjct: 1764 GPAGEKGDRGPPG-LDG-RSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPG 1821
Query: 89 ARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGA------------ 136
P P +P +PG L + +P GR +G +
Sbjct: 1822 PSGPPGLPGKPGE-DGKPG---LNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGER 1877
Query: 137 -APGVARAQRPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADG 179
APG+ Q P G G P G G P G GP GDRG + G
Sbjct: 1878 GAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKG 1922
Score = 39.3 bits (90), Expect = 0.003
Identities = 64/221 (28%), Positives = 72/221 (32%), Gaps = 56/221 (25%)
Query: 30 GPRER---HGPRTPGGQL----PGARRGPGPRRPAPLPAR--PPGALGSVLRPLRARPGC 80
GPR G R P G + PG + PG R P L R PPG G PG
Sbjct: 1563 GPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGP--------PGE 1614
Query: 81 R--PRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAP 138
+ P RP P P R G P PG++ L G AP
Sbjct: 1615 KGDPGRPGPPG---------PVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRG--AP 1663
Query: 139 GV----------------ARAQRPGGSG---GRSHPGGPGSPRGGGTVGPGDRGPAAADG 179
GV R PG SG R PG PG P GPG R G
Sbjct: 1664 GVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAR-EKGEPG 1722
Query: 180 GRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQ 220
R Q R +G P E ++ G P GPQ
Sbjct: 1723 DRGQEGPRG--PKGDPGLPGAPGERGIEGFRGPP----GPQ 1757
Score = 33.9 bits (76), Expect = 0.15
Identities = 47/177 (26%), Positives = 57/177 (32%), Gaps = 44/177 (24%)
Query: 106 PGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARA--QRPGGSGGRSHPGGPGSPRG 163
PG LA + PG+S A G P R +PG G + G G+P
Sbjct: 2649 PGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGI 2708
Query: 164 GGTVGP----------------GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQ 207
GG GP G RGP G + +R GA P E +
Sbjct: 2709 GGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGE---R 2765
Query: 208 SHHGTPALTQGPQSPRDGAQLGACTRPVDVRD------------------SGGRPLP 246
G P GP PR G + A D+R SG RPLP
Sbjct: 2766 GEQGRP----GPAGPR-GEKGEAALTEDDIRGFVRQEMSQHCACQGQFIASGSRPLP 2817
Score = 32.7 bits (73), Expect = 0.33
Identities = 64/220 (29%), Positives = 75/220 (34%), Gaps = 15/220 (6%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAA 89
G + G R G +PG+ PGP P P P GA G + L PG + + P
Sbjct: 2263 GASGKDGDRGSPG-VPGSPGLPGPVGPKGEPG-PTGAPGQAVVGL---PGAKGEKGAPGG 2317
Query: 90 RCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA-PGRSSALALAGGAAPGVARAQRPGG 148
L + R G P G A R PG G APG + G
Sbjct: 2318 LAGDLVGEPGAKGDR---GLPGPRGEKGEAGRAGEPGDPGEDGQKG--APGPKGFKGDPG 2372
Query: 149 SGGRSHPGGPGSPRGGGTVG-PGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQ 207
G PG PG P G +G PG G A G P +T E + L GP
Sbjct: 2373 VGVPGSPGPPGPPGVKGDLGLPGLPG-APGVVGFPGQTGPRGEMGQPGPSGERGLAGP-P 2430
Query: 208 SHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSG-GRPLP 246
G P P P GA D D G G P P
Sbjct: 2431 GREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGP 2470
Score = 31.6 bits (70), Expect = 0.73
Identities = 55/198 (27%), Positives = 66/198 (33%), Gaps = 22/198 (11%)
Query: 45 PGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPR-RPHPAARCLPLRPHRPTRRH 103
PG+ GP R P P PPG L + PG R + P + P P
Sbjct: 1687 PGSS-GPKGDRGEPGPPGPPGRL------VDTGPGAREKGEPGDRGQEGPRGPKGDPGLP 1739
Query: 104 RRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRG 163
PG + P P+ PG + G A G + P G GRS G G P
Sbjct: 1740 GAPGERGIEGFRGPPGPQGDPG------VRGPA--GEKGDRGPPGLDGRS--GLDGKPGA 1789
Query: 164 GGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPR 223
G GP A D GR E + P L G G P L P
Sbjct: 1790 AGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGK-PGEDGKPGLNGKNGEPG 1848
Query: 224 DGAQLGACTRPVDVRDSG 241
D + G R + DSG
Sbjct: 1849 DPGEDG---RKGEKGDSG 1863
Score = 28.9 bits (63), Expect = 4.7
Identities = 45/156 (28%), Positives = 54/156 (34%), Gaps = 17/156 (10%)
Query: 30 GPRERHGPRTPGGQ-LPGARRGPGPR--RPAPLPARPPGALGSVLRPLRARPGCRPRRPH 86
GP GP P GQ PG G GP+ R G G R LR PG P
Sbjct: 1887 GPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGE--RGLRGEPGSVPN--- 1941
Query: 87 PAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAP---RPAPGRSSALALAGGAAPGVARA 143
R L + + + + GS P P R G S G P
Sbjct: 1942 -VDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGP----I 1996
Query: 144 QRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADG 179
PG G + G PG P+G + G+RGP G
Sbjct: 1997 GFPGERGLKGDRGDPG-PQGPPGLALGERGPPGPSG 2031
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 55.5 bits (132), Expect = 5e-08
Identities = 65/219 (29%), Positives = 80/219 (36%), Gaps = 29/219 (13%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPR---RPAPLPARPPGALGSVLRPLRARPGCRPRRPH 86
G PRT Q P GP P RP+ P+R PG + P+ A+P +
Sbjct: 1034 GTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKD 1093
Query: 87 PAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRP 146
PA P RP P RP P PQ P P+ GRS AG A PG A
Sbjct: 1094 PAQPLEPKRPPPP-----RPVAPPTRPAPPQRPPPPS-GRSQPSPQAGLAGPGPA----- 1142
Query: 147 GGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAET-----------RGAA 195
G S R P P PR G P A+A P+ + +ET + A
Sbjct: 1143 GYSTAR--PTIP--PRAGVISAPQSHARASAGRLTPESQSKTSETSKGSTFLPEPLKPQA 1198
Query: 196 AAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRP 234
A PP + P P + P+ G Q T P
Sbjct: 1199 AFPPQSSLPPPAQRLQEPLVPVAAPMPQSGPQPNLETPP 1237
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 54.7 bits (130), Expect = 8e-08
Identities = 66/209 (31%), Positives = 76/209 (36%), Gaps = 37/209 (17%)
Query: 31 PRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAAR 90
P G G P +R P R P P PPG GS P RP + +R
Sbjct: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPP--RPSQHQSGSR 118
Query: 91 CLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPG--G 148
LRP AP P PG SSA A AAP A PG
Sbjct: 119 ---LRP---------------------AAPGPRPGCSSARASPAPAAPQAAARTAPGRAA 154
Query: 149 SGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEG-PVQ 207
SGG GPGS RG G+ G R P+ A G P T R +A P G P++
Sbjct: 155 SGG----SGPGS-RGQGSDQVGAR-PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLK 208
Query: 208 SH--HGTPALTQGPQSPRDGAQLGACTRP 234
S GT A + G G A + P
Sbjct: 209 SRPGSGTGARSCGTWGSGGGPGTAAASSP 237
Score = 33.5 bits (75), Expect = 0.19
Identities = 45/187 (24%), Positives = 52/187 (27%), Gaps = 55/187 (29%)
Query: 4 GMGSAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP 63
G SA+A P A+ P + G R G GAR +P PL R
Sbjct: 129 GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCR- 187
Query: 64 PGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA 123
RC P R R RRP G PL + P
Sbjct: 188 --------------------------RC-RAAPRRSARPFRRP-GLPL-----KSRPGSG 214
Query: 124 PGRSSALALAGGAAPGVARAQRPG---------------------GSGGRSHPGGPGSPR 162
G S G PG A A P G GGR G G+
Sbjct: 215 TGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQP 274
Query: 163 GGGTVGP 169
G + P
Sbjct: 275 GCRLLSP 281
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 54.7 bits (130), Expect = 8e-08
Identities = 66/209 (31%), Positives = 76/209 (36%), Gaps = 37/209 (17%)
Query: 31 PRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAAR 90
P G G P +R P R P P PPG GS P RP + +R
Sbjct: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPP--RPSQHQSGSR 118
Query: 91 CLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPG--G 148
LRP AP P PG SSA A AAP A PG
Sbjct: 119 ---LRP---------------------AAPGPRPGCSSARASPAPAAPQAAARTAPGRAA 154
Query: 149 SGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEG-PVQ 207
SGG GPGS RG G+ G R P+ A G P T R +A P G P++
Sbjct: 155 SGG----SGPGS-RGQGSDQVGAR-PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLK 208
Query: 208 SH--HGTPALTQGPQSPRDGAQLGACTRP 234
S GT A + G G A + P
Sbjct: 209 SRPGSGTGARSCGTWGSGGGPGTAAASSP 237
Score = 33.5 bits (75), Expect = 0.19
Identities = 45/187 (24%), Positives = 52/187 (27%), Gaps = 55/187 (29%)
Query: 4 GMGSAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP 63
G SA+A P A+ P + G R G GAR +P PL R
Sbjct: 129 GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCR- 187
Query: 64 PGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA 123
RC P R R RRP G PL + P
Sbjct: 188 --------------------------RC-RAAPRRSARPFRRP-GLPL-----KSRPGSG 214
Query: 124 PGRSSALALAGGAAPGVARAQRPG---------------------GSGGRSHPGGPGSPR 162
G S G PG A A P G GGR G G+
Sbjct: 215 TGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQP 274
Query: 163 GGGTVGP 169
G + P
Sbjct: 275 GCRLLSP 281
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 54.7 bits (130), Expect = 8e-08
Identities = 66/209 (31%), Positives = 76/209 (36%), Gaps = 37/209 (17%)
Query: 31 PRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAAR 90
P G G P +R P R P P PPG GS P RP + +R
Sbjct: 61 PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPP--RPSQHQSGSR 118
Query: 91 CLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPG--G 148
LRP AP P PG SSA A AAP A PG
Sbjct: 119 ---LRP---------------------AAPGPRPGCSSARASPAPAAPQAAARTAPGRAA 154
Query: 149 SGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEG-PVQ 207
SGG GPGS RG G+ G R P+ A G P T R +A P G P++
Sbjct: 155 SGG----SGPGS-RGQGSDQVGAR-PSRAGGQPPPLTCRRCRAAPRRSARPFRRPGLPLK 208
Query: 208 SH--HGTPALTQGPQSPRDGAQLGACTRP 234
S GT A + G G A + P
Sbjct: 209 SRPGSGTGARSCGTWGSGGGPGTAAASSP 237
Score = 33.5 bits (75), Expect = 0.19
Identities = 45/187 (24%), Positives = 52/187 (27%), Gaps = 55/187 (29%)
Query: 4 GMGSAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP 63
G SA+A P A+ P + G R G GAR +P PL R
Sbjct: 129 GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQPPPLTCR- 187
Query: 64 PGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA 123
RC P R R RRP G PL + P
Sbjct: 188 --------------------------RC-RAAPRRSARPFRRP-GLPL-----KSRPGSG 214
Query: 124 PGRSSALALAGGAAPGVARAQRPG---------------------GSGGRSHPGGPGSPR 162
G S G PG A A P G GGR G G+
Sbjct: 215 TGARSCGTWGSGGGPGTAAASSPSADFSSDSPQPIIIFGGALRVRGCGGRRRSNGQGTQP 274
Query: 163 GGGTVGP 169
G + P
Sbjct: 275 GCRLLSP 281
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 54.7 bits (130), Expect = 8e-08
Identities = 71/243 (29%), Positives = 81/243 (33%), Gaps = 54/243 (22%)
Query: 25 PCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRR 84
P I GP G G+ PG R PGP P L PPG G PG
Sbjct: 1205 PPGIQGPAGLDGLDGKDGK-PGLRGDPGPAGPPGLMG-PPGFKGKT-----GHPGL---- 1253
Query: 85 PHPAARCLPLRPHRPTRRHRRPG-----------GFPLAWGSPQPAPRPAPGRSSALALA 133
P P C P T R G G P G P P +P P SA+ L
Sbjct: 1254 PGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLK 1313
Query: 134 G--GAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVG-------------PGDRGPAAAD 178
G GA A PG G HPG PG P G G PG +G A
Sbjct: 1314 GDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAA 1373
Query: 179 GGRPQRTVRAAETRGAAAAP----------PLTLEGPV--QSHHGTPALTQGPQSPRDGA 226
G + Q A +G A P P+ GP + H G P + P P
Sbjct: 1374 GQKGQ-----AGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPG 1428
Query: 227 QLG 229
+G
Sbjct: 1429 SMG 1431
Score = 46.2 bits (108), Expect = 3e-05
Identities = 63/228 (27%), Positives = 80/228 (35%), Gaps = 51/228 (22%)
Query: 25 PCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRR 84
P + G R GP PG R PGP P P PPG G+V P PG + R
Sbjct: 1025 PPGLPGQRGEEGP-------PGMRGSPGP----PGPIGPPGFPGAVGSP--GLPGLQGER 1071
Query: 85 PHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQ 144
G L +P P PG A G PG+ + +
Sbjct: 1072 ----------------------GLTGLTGDKGEPGPPGQPGYPGATGPPG--LPGI-KGE 1106
Query: 145 R--PGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADGGRPQRTVRAAETRGAAAAPPLT 201
R G +G + PG PGS G GP G RG G ++ + + + PP
Sbjct: 1107 RGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPP-- 1164
Query: 202 LEGPVQSHHGTPALTQGPQSPRDGAQLGA--CTRPVDVRDSGGRPLPP 247
GP G P P P A+ G+ P + S G P PP
Sbjct: 1165 --GP----PGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPP 1206
Score = 40.0 bits (92), Expect = 0.002
Identities = 46/153 (30%), Positives = 52/153 (33%), Gaps = 35/153 (22%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAA 89
GP GP G L G PG R P PA PPG +G PG + + HP
Sbjct: 1204 GPPGIQGPAGLDG-LDGKDGKPGLRGD-PGPAGPPGLMGP--------PGFKGKTGHP-- 1251
Query: 90 RCLPLRPHRPTRRHRRPGGFPLAWGS-PQPAPRPAPGRSSALALAGGAAPGVARAQRPGG 148
G P G +P P + GR A G P RPG
Sbjct: 1252 ------------------GLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGP----QGRPGP 1289
Query: 149 SGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGR 181
G PG PG P G G +G A G R
Sbjct: 1290 PGHVGPPGPPGQPGPAGISAVGLKGDRGATGER 1322
Score = 38.5 bits (88), Expect = 0.006
Identities = 38/119 (31%), Positives = 45/119 (37%), Gaps = 29/119 (24%)
Query: 136 AAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVG-------PGDRGPAAADGGRPQRTVRA 188
AAPG R PG G PG PGSP G +G PG RG G + +
Sbjct: 1470 AAPG--RPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGI 1527
Query: 189 AETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPP 247
A G L GP GPQ P ++GA T P+ + G P PP
Sbjct: 1528 AGENG--------LPGP-----------PGPQGPPGYGKMGA-TGPMGQQGIPGIPGPP 1566
Score = 37.7 bits (86), Expect = 0.010
Identities = 53/175 (30%), Positives = 62/175 (35%), Gaps = 33/175 (18%)
Query: 37 PRTPGGQ-LPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGC------RPRRPHPAA 89
P TPG PG PG + PA P G G + G RP +P P
Sbjct: 693 PGTPGTTGRPGLSGEPGVQGPAG----PKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKG 748
Query: 90 RCLPLRPHRPTRRHRRPG--GFPLAWGSP-----QPAPRPAPGRSSALALAGGAAPGVAR 142
P RP + PG G P G P Q P P PGR APG+
Sbjct: 749 EQGPEGVGRPGK----PGQPGLPGVQGPPGLKGVQGEPGP-PGRGVQGPQGEPGAPGLPG 803
Query: 143 AQR-------PGGSGGRSHPGGPGSPRGGGTVGPGDR---GPAAADGGRPQRTVR 187
Q PG +G + G PG G VGP GP DG + Q +R
Sbjct: 804 IQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGLR 858
Score = 35.8 bits (81), Expect = 0.039
Identities = 38/138 (27%), Positives = 49/138 (35%), Gaps = 10/138 (7%)
Query: 105 RPG--GFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSG-----GRSHPGG 157
RPG G P G P G ++ +L G R +PG G G PG
Sbjct: 701 RPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGK 760
Query: 158 PGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQ 217
PG P G GP + G P R V+ + G AP L + G P T
Sbjct: 761 PGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQ--GEPGAPGLPGIQGLPGPRGPPGPT- 817
Query: 218 GPQSPRDGAQLGACTRPV 235
G + + + T PV
Sbjct: 818 GEKGAQGSPGVKGATGPV 835
Score = 35.4 bits (80), Expect = 0.050
Identities = 43/143 (30%), Positives = 52/143 (36%), Gaps = 13/143 (9%)
Query: 37 PRTPGGQLPGARRGPGPRRPAPLPARPPGALGS-----VLRPLRARPGCRPRRPHPAARC 91
P PG LPG + PGPR P P P GA GS P+ PG P
Sbjct: 796 PGAPG--LPGIQGLPGPRGP-PGPTGEKGAQGSPGVKGATGPV-GPPGASVSGPPGRDGQ 851
Query: 92 LPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGG 151
R T + P G G P P+ G + G + + +PG G
Sbjct: 852 QGQTGLRGTPGEKGPRGEK---GEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGP 908
Query: 152 RSHPGGPGSPRGGGTVG-PGDRG 173
PG PG P G G PG+ G
Sbjct: 909 PGIPGPPGPPGVPGLQGVPGNNG 931
Score = 34.7 bits (78), Expect = 0.086
Identities = 47/179 (26%), Positives = 63/179 (35%), Gaps = 23/179 (12%)
Query: 92 LPLRPHRPTRRHRRPGGFPLAWGSP-QPAPRPAPGRSSALALAGGAAPGVARAQRPGG-S 149
LP P P +R G P GSP P P PG A+ G PG+ + G +
Sbjct: 1022 LPGPPGLPGQRGEE--GPPGMRGSPGPPGPIGPPGFPGAVGSPG--LPGLQGERGLTGLT 1077
Query: 150 GGRSHPGGPGSPRGGGTVGP-------GDRGPAAADGGRPQRTVRAAETRGAAAAP--PL 200
G + PG PG P G GP G+RG + G + + +E P P
Sbjct: 1078 GDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPR 1137
Query: 201 TLEGPV--------QSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPDTL 251
GP Q G P P P ++G+ P + G + P L
Sbjct: 1138 GERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGL 1196
Score = 33.1 bits (74), Expect = 0.25
Identities = 58/209 (27%), Positives = 69/209 (33%), Gaps = 39/209 (18%)
Query: 46 GARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRR 105
G + PGP LP PPG G R R G + + P P P
Sbjct: 1114 GEKGEPGPPGSEGLPG-PPGPAGP--RGERGPQGNSGEKGDQGFQGQPGFPGPPG----- 1165
Query: 106 PGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGG 165
P GFP GSP P P P + S G G PG PG P
Sbjct: 1166 PPGFPGKVGSPGP-PGPQAEKGSE-----------------GIRGPSGLPGSPGPPG--- 1204
Query: 166 TVGPGDRGPAAADG--GRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPR 223
PG +GPA DG G+ + + G A P L + G P L
Sbjct: 1205 --PPGIQGPAGLDGLDGKDGKPGLRGDP-GPAGPPGLMGPPGFKGKTGHPGLPGPKGDCG 1261
Query: 224 DGAQLGACTRPVDVRDSG-----GRPLPP 247
G+ RP + G GRP PP
Sbjct: 1262 KPGPPGSTGRPGAEGEPGAMGPQGRPGPP 1290
Score = 31.6 bits (70), Expect = 0.73
Identities = 62/238 (26%), Positives = 77/238 (32%), Gaps = 34/238 (14%)
Query: 7 SAQACPCQV--PRAASTTWVPCQICGPRERHG-PRTPGGQLPGARRGP-----GPRRPAP 58
+A CP V R ++ T P G + G P PG + RG P P
Sbjct: 312 AADECPPCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEKGARGNDCVRISPDAPLQ 371
Query: 59 LPARPPGALG-------SVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPL 111
P G G S L G + + + +P +P R R PG +
Sbjct: 372 CAEGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGR----PGEICV 427
Query: 112 AWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRG-----GGT 166
Q PG LAG PG P G G PG PG P G G +
Sbjct: 428 IGPKGQKGD---PGFVGPEGLAG--EPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSS 482
Query: 167 VGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRD 224
PG GP GG+P + E P EG Q+ G P P D
Sbjct: 483 GIPGKEGP----GGKPGKPGVKGEKGDPCEVCPTLPEG-FQNFVGLPGKPGPKGEPGD 535
Score = 31.2 bits (69), Expect = 0.95
Identities = 46/148 (31%), Positives = 53/148 (35%), Gaps = 30/148 (20%)
Query: 106 PGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGG 165
P G A G P P P S+ L G VA PG SG + PG PG G
Sbjct: 621 PAGIKGAKGEPC---EPCPALSN---LQDGDVRVVAL---PGPSGEKGEPGPPGFGLPGK 671
Query: 166 TVGPGDRG--PAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPR 223
G+RG D G P T G P L+ G P + QGP P+
Sbjct: 672 QGKAGERGLKGQKGDAGNP----GDPGTPGTTGRPGLS---------GEPGV-QGPAGPK 717
Query: 224 DGAQLGACTR----PVDVRDSGGRPLPP 247
G + CT V D GRP P
Sbjct: 718 -GEKGDGCTACPSLQGTVTDMAGRPGQP 744
Score = 30.0 bits (66), Expect = 2.1
Identities = 40/141 (28%), Positives = 51/141 (36%), Gaps = 20/141 (14%)
Query: 43 QLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRR 102
++ A PGP P RP GA GS P + G R+ P R LP T+
Sbjct: 1467 EMAAAPGRPGPPGKDGAPGRP-GAPGSPGLP--GQIGREGRQGLPGVRGLP-----GTKG 1518
Query: 103 HRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPR 162
+ G +A + P P P P PG + G G + PG PG P
Sbjct: 1519 EKGDIGIGIAGENGLPGP-PGPQ----------GPPGYGKMGATGPMGQQGIPGIPGPPG 1567
Query: 163 GGGTVG-PGDRGPAAADGGRP 182
G G G P+ G P
Sbjct: 1568 PMGQPGKAGHCNPSDCFGAMP 1588
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 54.3 bits (129), Expect = 1e-07
Identities = 72/224 (32%), Positives = 87/224 (38%), Gaps = 37/224 (16%)
Query: 16 PRAASTTWVPCQICGPRERHG-PRTPGGQ-LPGARR---GPGPRRPAPLPARPPGALGSV 70
P+ A P + GP+ +G P PG LPGAR PG P P GA G
Sbjct: 526 PKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQG-KVGPSGAPGED 584
Query: 71 LRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPG-----GFPLAWGSPQPAPRPAPG 125
RP PG + R P P P + PG G P A P R PG
Sbjct: 585 GRP--GPPGPQGARGQPGVMGFP----GPKGANGEPGKAGEKGLPGA-----PGLRGLPG 633
Query: 126 RSSALALAGGAAPGVARAQR-----PGGSGGRSHPGGPGSPRGGGTVG----PGDRGPAA 176
+ AG P +R PG SG + PG PG P GG G PG+ G
Sbjct: 634 KDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPG 693
Query: 177 ADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQ 220
G R +R RG+ A L+GP + GTP T GP+
Sbjct: 694 LVGPRGERGFPG--ERGSPGAQ--GLQGP-RGLPGTPG-TDGPK 731
Score = 52.4 bits (124), Expect = 4e-07
Identities = 82/266 (30%), Positives = 92/266 (34%), Gaps = 59/266 (22%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP--PGALGSVLRPLRAR--PGCRPRRP 85
GP G R GQ PG PGP PA P P PGA G P AR G + R
Sbjct: 336 GPAGAAGARGNDGQ-PGPAGPPGPVGPAGGPGFPGAPGAKGEA-GPTGARGPEGAQGPRG 393
Query: 86 HPAARCLPLRPHRPTRRHRRPG--GFPLAWGSPQ----------PAPRPAPGRSSALALA 133
P P P PG G P A GS P PR PG A
Sbjct: 394 EPGTPGSP----GPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 449
Query: 134 GGAA----PGVARAQRPGGSGGRSHPGGP----------------GSPRGGGTVG-PGDR 172
G PG+A + G G P GP G P G G +G PG+R
Sbjct: 450 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGER 509
Query: 173 GPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACT 232
G A + G P + A P L GP + +G P P P GA+ G
Sbjct: 510 G-APGNRGFPGQDGLAGPKGAPGERGPSGLAGP-KGANGDPGRPGEPGLP--GAR-GLTG 564
Query: 233 RPVDVRDSG-----------GRPLPP 247
RP D G GRP PP
Sbjct: 565 RPGDAGPQGKVGPSGAPGEDGRPGPP 590
Score = 50.8 bits (120), Expect = 1e-06
Identities = 80/273 (29%), Positives = 90/273 (32%), Gaps = 37/273 (13%)
Query: 6 GSAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQ--LPGA--RRGPGPRRPAPLPA 61
G A A Q P A P + GP+ G + P G PGA R GP P P
Sbjct: 858 GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPP 917
Query: 62 RPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPR 121
PPG G P AR P P A P P PG + P P+
Sbjct: 918 GPPGPSGKD-GPKGARGDSGP--PGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQ 974
Query: 122 PAPGRSSALALAGGAA----PGV-------ARAQRPGGSGGRSHPGGPGSPRGGGTVG-- 168
G+ + L G PG+ + PG SG R PG G P G G
Sbjct: 975 GLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 1034
Query: 169 -----PGDRGPAAADGGRPQRTVRAAETRGAAAAP----PLTLEGPV-----QSHHGTPA 214
PG GP DG + R ET GA AP P GP Q G A
Sbjct: 1035 GREGSPGADGPPGRDGAAGVKGDR-GET-GAVGAPGAPGPPGSPGPAGPTGKQGDRG-EA 1091
Query: 215 LTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPP 247
QGP P A P R G P
Sbjct: 1092 GAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP 1124
Score = 50.4 bits (119), Expect = 2e-06
Identities = 57/169 (33%), Positives = 61/169 (36%), Gaps = 26/169 (15%)
Query: 30 GPRERHGPRTPGGQL--PGARRGPGPRRPA--PLPARPPGALGSVLRPLRARPGCRPRRP 85
GP+ GP P GQ PG G + P P PA P GA G G R R
Sbjct: 441 GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA-----GEEGKRGARG 495
Query: 86 HPAARCLPLRPHRPTRRHRRPG--GFPLAWGSPQPAPRPAPGRSSALALAG--GAAPGVA 141
P + P P PG GFP G P+ APG LAG GA
Sbjct: 496 EPGG----VGPIGPPGERGAPGNRGFPGQDGLA--GPKGAPGERGPSGLAGPKGANGDPG 549
Query: 142 RAQRPGGSGGRSHPGGPGSPRGGGTVGP-------GDRGPAAADGGRPQ 183
R PG G R G PG G VGP G GP G R Q
Sbjct: 550 RPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQ 598
Score = 46.2 bits (108), Expect = 3e-05
Identities = 70/246 (28%), Positives = 84/246 (34%), Gaps = 43/246 (17%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAA 89
G + GPR G+ PG PGP P P P PPG G+ + +
Sbjct: 141 GEKGAPGPRGRDGE-PGTPGNPGPPGP-PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGV 198
Query: 90 RCLPLRPHRPTRRHRRPGGFPLAWG-------------SPQPAPRPAPGRSSALALAGGA 136
P+ P P R P G P G S PR PG G A
Sbjct: 199 MQGPMGPMGP-RGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEA 257
Query: 137 A-PGVARAQRPGG-SGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGA 194
PG A + P G G R PG PG P G RG DG +G
Sbjct: 258 GKPGKAGERGPPGPQGARGFPGTPGLPG-----VKGHRGYPGLDG-----------AKGE 301
Query: 195 AAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRP---VDVRDSGGRPLP--PPD 249
A AP + E +G+P GP PR T P R + G+P P PP
Sbjct: 302 AGAPGVKGESGSPGENGSP----GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 357
Query: 250 TLASAG 255
+ AG
Sbjct: 358 PVGPAG 363
Score = 45.8 bits (107), Expect = 4e-05
Identities = 76/258 (29%), Positives = 90/258 (34%), Gaps = 44/258 (17%)
Query: 6 GSAQACPCQVPRAASTTWVPCQICGPRERHG-PRTPGGQLPGARRG----PGPRRP--AP 58
GSA A R + P GP G P G Q ++G PGP+ P AP
Sbjct: 813 GSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAP 872
Query: 59 LPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQP 118
P P G G G R + P A P R G P + G+P P
Sbjct: 873 GPQGPTGVTGP--------KGARGAQGPPGATGFPGAAGRV--------GPPGSNGNPGP 916
Query: 119 APRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAAD 178
P P A G + RA PG G P GP +G PGD GP+ A+
Sbjct: 917 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG----PAGPPGEKG----EPGDDGPSGAE 968
Query: 179 GGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVR 238
G P A RG P + G P L GP S G Q GA D
Sbjct: 969 G--PPGPQGLAGQRGIVGLP------GQRGERGFPGL-PGP-SGEPGKQ-GAPGASGDRG 1017
Query: 239 DSGGRPLPPPDTLASAGD 256
G P+ PP AG+
Sbjct: 1018 PPG--PVGPPGLTGPAGE 1033
Score = 45.4 bits (106), Expect = 5e-05
Identities = 62/223 (27%), Positives = 75/223 (33%), Gaps = 46/223 (20%)
Query: 26 CQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRP 85
C IC PG + G + PG + P PPG G G R R
Sbjct: 86 CPICPTDLATASGQPGPK--GQKGEPGDIKDIVGPKGPPGPQGPA-----GEQGPRGDRG 138
Query: 86 HPAARCLPLRPHRPTRRHRRPG--GFPLAWGSPQPAPRPAPGRSSALALAGG-------- 135
+ P P R PG G P G P P P G + A +AGG
Sbjct: 139 DKGEKGAP----GPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGA 194
Query: 136 ---------------AAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAA--A 177
PG A A PG G + +PG PG P G +GP G GP
Sbjct: 195 QLGVMQGPMGPMGPRGPPGPAGA--PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPG 252
Query: 178 DGGRPQRTVRAAE-----TRGAAAAPPLTLEGPVQSHHGTPAL 215
D G + +A E +GA P V+ H G P L
Sbjct: 253 DDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGL 295
Score = 44.7 bits (104), Expect = 8e-05
Identities = 53/203 (26%), Positives = 70/203 (34%), Gaps = 15/203 (7%)
Query: 30 GPRERHGPR-TPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPA 88
GP + G R G Q P GP R P P G G PG R + H
Sbjct: 1080 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEA-----GEPGERGLKGHRG 1134
Query: 89 ARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA--PGRSSALALAGGAAPGVARAQRP 146
L P P + P P+ P P G+ A + G P R R
Sbjct: 1135 FTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRG-RS 1193
Query: 147 GGSGGRSHPGGPGSPRGGGTVGPG-DRGPAAADGGR-----PQRTVRAAETRGAAAAPPL 200
G +G PG PG P G GPG D A G R P + +RA + G
Sbjct: 1194 GETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDA 1253
Query: 201 TLEGPVQSHHGTPALTQGPQSPR 223
++ ++S + + P+ R
Sbjct: 1254 EVDATLKSLNNQIESIRSPEGSR 1276
Score = 42.4 bits (98), Expect = 4e-04
Identities = 50/156 (32%), Positives = 55/156 (35%), Gaps = 29/156 (18%)
Query: 36 GPRTPGGQLPGARRGPGPRRPA--------PLPARPPGALGSVLRP-LRARPGCRPRRPH 86
GP P G LPG R GP A P PA PPG +G P PG +
Sbjct: 321 GPMGPRG-LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP 379
Query: 87 PAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA-PGRSSALALAGGA-APGVARAQ 144
AR + P G P GSP PA PG G A APG+A
Sbjct: 380 TGAR--------GPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIA--- 428
Query: 145 RPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADG 179
G PG G P G GP G +G G
Sbjct: 429 -----GAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 459
Score = 37.7 bits (86), Expect = 0.010
Identities = 65/246 (26%), Positives = 77/246 (31%), Gaps = 32/246 (13%)
Query: 30 GPRERHGPRTPGGQL--PGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHP 87
GP+ GP P G PG + PG R A + A P G G V P P +
Sbjct: 729 GPKGASGPAGPPGAQGPPGLQGMPGERGAAGI-AGPKGDRGDVGEK---GPEGAPGKDGG 784
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSPQPA----PRPAPGRSSALAL---AGGAAPGV 140
P+ P P + G G P PA R APG AG A P
Sbjct: 785 RGLTGPIGPPGPAGANGEKGEV----GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPG 840
Query: 141 ARAQ-----RPGGSGGRSHPGGPGSPRGGGTVGP----GDRGPAAADGGRPQRTVRAAET 191
A Q G +G + G PG G GP G GP A G +
Sbjct: 841 ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG 900
Query: 192 RGAAAAPPLTLEGPVQSHHGTPALTQGPQSPR-DGAQLGACTRPVDVRDSGGRPLPPPDT 250
PP + P P+ GP+ R D G P P PP
Sbjct: 901 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEP-----GLQGPAGPPGE 955
Query: 251 LASAGD 256
GD
Sbjct: 956 KGEPGD 961
Score = 37.4 bits (85), Expect = 0.013
Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 23/168 (13%)
Query: 31 PRERHGPRTPGGQLPGARRGPGPRR-PAPLPAR-PPGALGSVLRPLRARPGCR--PRRPH 86
P E P PG Q GAR PG P P A PG G + L PG R P +
Sbjct: 581 PGEDGRPGPPGPQ--GARGQPGVMGFPGPKGANGEPGKAGE--KGLPGAPGLRGLPGKDG 636
Query: 87 PAARCLPLRPHRPTRRHRRPG--------GFPLAWGSP----QPAPRPAPGRSSALALAG 134
P P P G G P G P +P + PG + A L G
Sbjct: 637 ETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVG 696
Query: 135 GAAPGVARAQR--PGGSGGRSHPGGPGSPRGGGTVG-PGDRGPAAADG 179
+R PG G + G PG+P G G G GP A G
Sbjct: 697 PRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG 744
Score = 33.5 bits (75), Expect = 0.19
Identities = 47/165 (28%), Positives = 59/165 (35%), Gaps = 29/165 (17%)
Query: 33 ERHGPRTPGGQ-LPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARC 91
E+ P PG + LPG G P P PA P G G + PG + P
Sbjct: 619 EKGLPGAPGLRGLPGKDGETGAAGP-PGPAGPAGERGE-----QGAPGPSGFQGLPG--- 669
Query: 92 LPLRPHRPTRRHRRPG--GFPLAWGSPQ----------PAPRPAPGRSSALALAGGAAPG 139
P P +PG G P G+P P R +PG G PG
Sbjct: 670 ----PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG--LPG 723
Query: 140 VARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQR 184
P G+ G + P G P G + PG+RG A G + R
Sbjct: 724 TPGTDGPKGASGPAGPPGAQGPPGLQGM-PGERGAAGIAGPKGDR 767
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 54.3 bits (129), Expect = 1e-07
Identities = 72/224 (32%), Positives = 87/224 (38%), Gaps = 37/224 (16%)
Query: 16 PRAASTTWVPCQICGPRERHG-PRTPGGQ-LPGARR---GPGPRRPAPLPARPPGALGSV 70
P+ A P + GP+ +G P PG LPGAR PG P P GA G
Sbjct: 457 PKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQG-KVGPSGAPGED 515
Query: 71 LRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPG-----GFPLAWGSPQPAPRPAPG 125
RP PG + R P P P + PG G P A P R PG
Sbjct: 516 GRP--GPPGPQGARGQPGVMGFP----GPKGANGEPGKAGEKGLPGA-----PGLRGLPG 564
Query: 126 RSSALALAGGAAPGVARAQR-----PGGSGGRSHPGGPGSPRGGGTVG----PGDRGPAA 176
+ AG P +R PG SG + PG PG P GG G PG+ G
Sbjct: 565 KDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPG 624
Query: 177 ADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQ 220
G R +R RG+ A L+GP + GTP T GP+
Sbjct: 625 LVGPRGERGFPG--ERGSPGAQ--GLQGP-RGLPGTPG-TDGPK 662
Score = 52.4 bits (124), Expect = 4e-07
Identities = 82/266 (30%), Positives = 92/266 (34%), Gaps = 59/266 (22%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP--PGALGSVLRPLRAR--PGCRPRRP 85
GP G R GQ PG PGP PA P P PGA G P AR G + R
Sbjct: 267 GPAGAAGARGNDGQ-PGPAGPPGPVGPAGGPGFPGAPGAKGEA-GPTGARGPEGAQGPRG 324
Query: 86 HPAARCLPLRPHRPTRRHRRPG--GFPLAWGSPQ----------PAPRPAPGRSSALALA 133
P P P PG G P A GS P PR PG A
Sbjct: 325 EPGTPGSP----GPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPL 380
Query: 134 GGAA----PGVARAQRPGGSGGRSHPGGP----------------GSPRGGGTVG-PGDR 172
G PG+A + G G P GP G P G G +G PG+R
Sbjct: 381 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGER 440
Query: 173 GPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACT 232
G A + G P + A P L GP + +G P P P GA+ G
Sbjct: 441 G-APGNRGFPGQDGLAGPKGAPGERGPSGLAGP-KGANGDPGRPGEPGLP--GAR-GLTG 495
Query: 233 RPVDVRDSG-----------GRPLPP 247
RP D G GRP PP
Sbjct: 496 RPGDAGPQGKVGPSGAPGEDGRPGPP 521
Score = 50.8 bits (120), Expect = 1e-06
Identities = 80/273 (29%), Positives = 90/273 (32%), Gaps = 37/273 (13%)
Query: 6 GSAQACPCQVPRAASTTWVPCQICGPRERHGPRTPGGQ--LPGA--RRGPGPRRPAPLPA 61
G A A Q P A P + GP+ G + P G PGA R GP P P
Sbjct: 789 GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPP 848
Query: 62 RPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPR 121
PPG G P AR P P A P P PG + P P+
Sbjct: 849 GPPGPSGKD-GPKGARGDSGP--PGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQ 905
Query: 122 PAPGRSSALALAGGAA----PGV-------ARAQRPGGSGGRSHPGGPGSPRGGGTVG-- 168
G+ + L G PG+ + PG SG R PG G P G G
Sbjct: 906 GLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEP 965
Query: 169 -----PGDRGPAAADGGRPQRTVRAAETRGAAAAP----PLTLEGPV-----QSHHGTPA 214
PG GP DG + R ET GA AP P GP Q G A
Sbjct: 966 GREGSPGADGPPGRDGAAGVKGDR-GET-GAVGAPGAPGPPGSPGPAGPTGKQGDRG-EA 1022
Query: 215 LTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPP 247
QGP P A P R G P
Sbjct: 1023 GAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP 1055
Score = 50.4 bits (119), Expect = 2e-06
Identities = 57/169 (33%), Positives = 61/169 (36%), Gaps = 26/169 (15%)
Query: 30 GPRERHGPRTPGGQL--PGARRGPGPRRPA--PLPARPPGALGSVLRPLRARPGCRPRRP 85
GP+ GP P GQ PG G + P P PA P GA G G R R
Sbjct: 372 GPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA-----GEEGKRGARG 426
Query: 86 HPAARCLPLRPHRPTRRHRRPG--GFPLAWGSPQPAPRPAPGRSSALALAG--GAAPGVA 141
P + P P PG GFP G P+ APG LAG GA
Sbjct: 427 EPGG----VGPIGPPGERGAPGNRGFPGQDGLA--GPKGAPGERGPSGLAGPKGANGDPG 480
Query: 142 RAQRPGGSGGRSHPGGPGSPRGGGTVGP-------GDRGPAAADGGRPQ 183
R PG G R G PG G VGP G GP G R Q
Sbjct: 481 RPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQ 529
Score = 46.2 bits (108), Expect = 3e-05
Identities = 70/246 (28%), Positives = 84/246 (34%), Gaps = 43/246 (17%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAA 89
G + GPR G+ PG PGP P P P PPG G+ + +
Sbjct: 72 GEKGAPGPRGRDGE-PGTPGNPGPPGP-PGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGV 129
Query: 90 RCLPLRPHRPTRRHRRPGGFPLAWG-------------SPQPAPRPAPGRSSALALAGGA 136
P+ P P R P G P G S PR PG G A
Sbjct: 130 MQGPMGPMGP-RGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEA 188
Query: 137 A-PGVARAQRPGG-SGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGA 194
PG A + P G G R PG PG P G RG DG +G
Sbjct: 189 GKPGKAGERGPPGPQGARGFPGTPGLPG-----VKGHRGYPGLDG-----------AKGE 232
Query: 195 AAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRP---VDVRDSGGRPLP--PPD 249
A AP + E +G+P GP PR T P R + G+P P PP
Sbjct: 233 AGAPGVKGESGSPGENGSP----GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 288
Query: 250 TLASAG 255
+ AG
Sbjct: 289 PVGPAG 294
Score = 45.8 bits (107), Expect = 4e-05
Identities = 76/258 (29%), Positives = 90/258 (34%), Gaps = 44/258 (17%)
Query: 6 GSAQACPCQVPRAASTTWVPCQICGPRERHG-PRTPGGQLPGARRG----PGPRRP--AP 58
GSA A R + P GP G P G Q ++G PGP+ P AP
Sbjct: 744 GSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAP 803
Query: 59 LPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQP 118
P P G G G R + P A P R G P + G+P P
Sbjct: 804 GPQGPTGVTGP--------KGARGAQGPPGATGFPGAAGRV--------GPPGSNGNPGP 847
Query: 119 APRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAAD 178
P P A G + RA PG G P GP +G PGD GP+ A+
Sbjct: 848 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG----PAGPPGEKG----EPGDDGPSGAE 899
Query: 179 GGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVR 238
G P A RG P + G P L GP S G Q GA D
Sbjct: 900 G--PPGPQGLAGQRGIVGLP------GQRGERGFPGL-PGP-SGEPGKQ-GAPGASGDRG 948
Query: 239 DSGGRPLPPPDTLASAGD 256
G P+ PP AG+
Sbjct: 949 PPG--PVGPPGLTGPAGE 964
Score = 44.7 bits (104), Expect = 8e-05
Identities = 60/211 (28%), Positives = 73/211 (34%), Gaps = 46/211 (21%)
Query: 38 RTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPH 97
R PG + G + PG + P PPG G G R R + P
Sbjct: 29 RQPGPK--GQKGEPGDIKDIVGPKGPPGPQGPA-----GEQGPRGDRGDKGEKGAP---- 77
Query: 98 RPTRRHRRPG--GFPLAWGSPQPAPRPAPGRSSALALAGG-------------------- 135
P R PG G P G P P P G + A +AGG
Sbjct: 78 GPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPM 137
Query: 136 ---AAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAA--ADGGRPQRTVRAA 189
PG A A PG G + +PG PG P G +GP G GP D G + +A
Sbjct: 138 GPRGPPGPAGA--PGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAG 195
Query: 190 E-----TRGAAAAPPLTLEGPVQSHHGTPAL 215
E +GA P V+ H G P L
Sbjct: 196 ERGPPGPQGARGFPGTPGLPGVKGHRGYPGL 226
Score = 44.7 bits (104), Expect = 8e-05
Identities = 53/203 (26%), Positives = 70/203 (34%), Gaps = 15/203 (7%)
Query: 30 GPRERHGPR-TPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPA 88
GP + G R G Q P GP R P P G G PG R + H
Sbjct: 1011 GPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEA-----GEPGERGLKGHRG 1065
Query: 89 ARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA--PGRSSALALAGGAAPGVARAQRP 146
L P P + P P+ P P G+ A + G P R R
Sbjct: 1066 FTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRG-RS 1124
Query: 147 GGSGGRSHPGGPGSPRGGGTVGPG-DRGPAAADGGR-----PQRTVRAAETRGAAAAPPL 200
G +G PG PG P G GPG D A G R P + +RA + G
Sbjct: 1125 GETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQHDA 1184
Query: 201 TLEGPVQSHHGTPALTQGPQSPR 223
++ ++S + + P+ R
Sbjct: 1185 EVDATLKSLNNQIESIRSPEGSR 1207
Score = 42.4 bits (98), Expect = 4e-04
Identities = 50/156 (32%), Positives = 55/156 (35%), Gaps = 29/156 (18%)
Query: 36 GPRTPGGQLPGARRGPGPRRPA--------PLPARPPGALGSVLRP-LRARPGCRPRRPH 86
GP P G LPG R GP A P PA PPG +G P PG +
Sbjct: 252 GPMGPRG-LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGP 310
Query: 87 PAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA-PGRSSALALAGGA-APGVARAQ 144
AR + P G P GSP PA PG G A APG+A
Sbjct: 311 TGAR--------GPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIA--- 359
Query: 145 RPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADG 179
G PG G P G GP G +G G
Sbjct: 360 -----GAPGFPGPRGPPGPQGATGPLGPKGQTGEPG 390
Score = 37.7 bits (86), Expect = 0.010
Identities = 65/246 (26%), Positives = 77/246 (31%), Gaps = 32/246 (13%)
Query: 30 GPRERHGPRTPGGQL--PGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHP 87
GP+ GP P G PG + PG R A + A P G G V P P +
Sbjct: 660 GPKGASGPAGPPGAQGPPGLQGMPGERGAAGI-AGPKGDRGDVGEK---GPEGAPGKDGG 715
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSPQPA----PRPAPGRSSALAL---AGGAAPGV 140
P+ P P + G G P PA R APG AG A P
Sbjct: 716 RGLTGPIGPPGPAGANGEKGEV----GPPGPAGSAGARGAPGERGETGPPGPAGFAGPPG 771
Query: 141 ARAQ-----RPGGSGGRSHPGGPGSPRGGGTVGP----GDRGPAAADGGRPQRTVRAAET 191
A Q G +G + G PG G GP G GP A G +
Sbjct: 772 ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG 831
Query: 192 RGAAAAPPLTLEGPVQSHHGTPALTQGPQSPR-DGAQLGACTRPVDVRDSGGRPLPPPDT 250
PP + P P+ GP+ R D G P P PP
Sbjct: 832 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEP-----GLQGPAGPPGE 886
Query: 251 LASAGD 256
GD
Sbjct: 887 KGEPGD 892
Score = 37.4 bits (85), Expect = 0.013
Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 23/168 (13%)
Query: 31 PRERHGPRTPGGQLPGARRGPGPRR-PAPLPAR-PPGALGSVLRPLRARPGCR--PRRPH 86
P E P PG Q GAR PG P P A PG G + L PG R P +
Sbjct: 512 PGEDGRPGPPGPQ--GARGQPGVMGFPGPKGANGEPGKAGE--KGLPGAPGLRGLPGKDG 567
Query: 87 PAARCLPLRPHRPTRRHRRPG--------GFPLAWGSP----QPAPRPAPGRSSALALAG 134
P P P G G P G P +P + PG + A L G
Sbjct: 568 ETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVG 627
Query: 135 GAAPGVARAQR--PGGSGGRSHPGGPGSPRGGGTVG-PGDRGPAAADG 179
+R PG G + G PG+P G G G GP A G
Sbjct: 628 PRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQG 675
Score = 33.5 bits (75), Expect = 0.19
Identities = 47/165 (28%), Positives = 59/165 (35%), Gaps = 29/165 (17%)
Query: 33 ERHGPRTPGGQ-LPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARC 91
E+ P PG + LPG G P P PA P G G + PG + P
Sbjct: 550 EKGLPGAPGLRGLPGKDGETGAAGP-PGPAGPAGERGE-----QGAPGPSGFQGLPG--- 600
Query: 92 LPLRPHRPTRRHRRPG--GFPLAWGSPQ----------PAPRPAPGRSSALALAGGAAPG 139
P P +PG G P G+P P R +PG G PG
Sbjct: 601 ----PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG--LPG 654
Query: 140 VARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQR 184
P G+ G + P G P G + PG+RG A G + R
Sbjct: 655 TPGTDGPKGASGPAGPPGAQGPPGLQGM-PGERGAAGIAGPKGDR 698
>gi|113427525 PREDICTED: similar to hCG2037003 [Homo sapiens]
Length = 196
Score = 54.3 bits (129), Expect = 1e-07
Identities = 53/147 (36%), Positives = 61/147 (41%), Gaps = 20/147 (13%)
Query: 51 PGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFP 110
PGP P P PA ARP R P AR L + RR PG
Sbjct: 19 PGPETPPPAPAPT------------ARPRLRLPAPDWRARRADLTRRKGLRRGE-PGSRG 65
Query: 111 LAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSG---GRSHPGGPGSPRGGGTV 167
L G P A RP +S +G AP +RAQRPG SG + PG G++
Sbjct: 66 LGEG-PAAARRPQV-QSIDTTPSGEGAPSFSRAQRPGRSGPSPSLASDPAPGRGAAWGSL 123
Query: 168 GPGDRGPA--AADGGRPQRTVRAAETR 192
PG R A + GGR R RAAE R
Sbjct: 124 RPGKRQQALESEAGGRASREARAAEVR 150
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 53.9 bits (128), Expect = 1e-07
Identities = 73/239 (30%), Positives = 90/239 (37%), Gaps = 27/239 (11%)
Query: 36 GPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRP-LRARPGCRPRRPHPAARCLP- 93
GP P G P RGP A P PPG +G++ P + PG P + P
Sbjct: 1088 GPMGPPG--PPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPG---ESGSPGIQGEPG 1142
Query: 94 LRPHRPTRRHRRPGGFPLAWGSPQP-------APRPAPGRSSALALAGGAAPGVARAQ-- 144
++ R R + G P G P P P+ PG G G R Q
Sbjct: 1143 VKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG 1202
Query: 145 RPGGSGGRSHPGGPGSPRGGGTVGP----GDRGPAAADGGRPQRTVRAAE-TRGAAAAPP 199
G G PG PGSP G GP G RGPA + G ++ + A+ GA AP
Sbjct: 1203 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1262
Query: 200 LTLEGPVQSHHGTPALTQGPQSPRD-GAQLGACTRPVDVRDSG-GRPLPPPDTLASAGD 256
T GPV PA GP R +G RP +G P+ PP GD
Sbjct: 1263 KT--GPVGP--AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGD 1317
Score = 50.1 bits (118), Expect = 2e-06
Identities = 68/236 (28%), Positives = 81/236 (34%), Gaps = 47/236 (19%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPA--PLPARPPGALGSVLRPLRARPGCRPRRPHP 87
GPR G + GQ PG PGP+ P P PG +G P P P
Sbjct: 1145 GPRGERGEKGESGQ-PGEPGPPGPKGPTGDDGPKGNPGPVGF------------PGDPGP 1191
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGA-APGVARAQRP 146
P R + R G P GSP P P L G A +PG R
Sbjct: 1192 PGEGGP-RGQDGAKGDRGEDGEPGQPGSPGPTGENGP--PGPLGKRGPAGSPG--SEGRQ 1246
Query: 147 GGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADG-----------GRPQRTVRAAETR-- 192
GG G + PG G+P G VGP G G DG GRP T +A
Sbjct: 1247 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV 1306
Query: 193 GAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP 248
G P L + + G P L +G P + + G R LP P
Sbjct: 1307 GPPGLPGLRGDAGAKGEKGHPGL------------IGLIGPPGEQGEKGDRGLPGP 1350
Score = 47.4 bits (111), Expect = 1e-05
Identities = 58/192 (30%), Positives = 72/192 (37%), Gaps = 24/192 (12%)
Query: 25 PCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRP-LRARPGCRPR 83
P GP + GP G LPG+ G R A A PPG +G P LR G +
Sbjct: 1266 PVGPAGPAGKPGPDGLRG-LPGSVGQQG-RPGATGQAGPPGPVGPPGLPGLRGDAGAKGE 1323
Query: 84 RPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSP-QPAPRPAPGRSSALALAGGAAPGVAR 142
+ HP L P + R G P GSP Q PG S + G PG+
Sbjct: 1324 KGHPGLIGLIGPPGEQGEKGDR--GLPGPQGSPGQKGEMGIPGASGPIG--PGGPPGLPG 1379
Query: 143 AQRPGGSGGRSHPGGPGSPRG--GGTVGPGDRGPA--------------AADGGRPQRTV 186
P G+ G + PGGP +G G PG G + DG R +
Sbjct: 1380 PAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQED 1439
Query: 187 RAAETRGAAAAP 198
A T GA +P
Sbjct: 1440 EAIPTGGAPGSP 1451
Score = 43.1 bits (100), Expect = 2e-04
Identities = 50/155 (32%), Positives = 60/155 (38%), Gaps = 21/155 (13%)
Query: 31 PRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSV-----LRPLRARPGCRPRRP 85
P ER P T GG PG + GP P P PA PG G+ + P RPG P+ P
Sbjct: 901 PGERGLPGTAGG--PGLKGNEGPSGP-PGPAGSPGERGAAGSGGPIGP-PGRPG--PQGP 954
Query: 86 HPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQR 145
AA + + P G G P P P +A G V +
Sbjct: 955 PGAAG------EKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQ 1008
Query: 146 PGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADG 179
G G + G PG P G +GP G G A ADG
Sbjct: 1009 KGTKGNKGEHGPPGPP---GPIGPVGQPGAAGADG 1040
Score = 40.0 bits (92), Expect = 0.002
Identities = 54/203 (26%), Positives = 66/203 (32%), Gaps = 18/203 (8%)
Query: 25 PCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRR 84
P + GP+ G P G+ R PGP P P PG G P P +
Sbjct: 837 PPGVVGPQGAAGETGPMGE----RGHPGPPGP-PGEQGLPGTAGKEGTKGDPGPPGAPGK 891
Query: 85 PHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQ 144
PA LR R G P G+ P+ P P S A G+ +
Sbjct: 892 DGPAG----LRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPG 947
Query: 145 RPGGSGGRSHPGGPGSPRGGGTVGP----GDRGPAAADG-GRPQRTVRAAETRGAAAAPP 199
RPG G G G P G +GP G +GP G P +G P
Sbjct: 948 RPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPG 1007
Query: 200 LTLEGPVQSHHGTPALTQGPQSP 222
+ HG P GP P
Sbjct: 1008 QKGTKGNKGEHGPP----GPPGP 1026
Score = 38.1 bits (87), Expect = 0.008
Identities = 49/161 (30%), Positives = 57/161 (35%), Gaps = 32/161 (19%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPL--PARPPGALGSVLRPLRARPGCR----PR 83
GP G R G++ G R PG P L P PPG G PG R P+
Sbjct: 497 GPPGEDGERGDDGEI-GPRGLPGESGPRGLLGPKGPPGIPGP--------PGVRGMDGPQ 547
Query: 84 RPHPAARCLPLRPHRPTRRHRRPG--GFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVA 141
P + P P + PG G P G+ P P L PG+
Sbjct: 548 GPKGSLG--PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL-------PGM- 597
Query: 142 RAQRPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADGGR 181
PG G HPG G P G GP G +GP G R
Sbjct: 598 ----PGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 634
Score = 37.7 bits (86), Expect = 0.010
Identities = 49/158 (31%), Positives = 55/158 (34%), Gaps = 21/158 (13%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP--PGALGSVLRPLRARPGCRPRRPHP 87
GP+ R GP G PG G LP P G GS+ PG
Sbjct: 686 GPKGRTGPTGDPGP-PGLMGEKGKLGVPGLPGYPGRQGPKGSL-----GFPGFPGASGEK 739
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQR-- 145
AR L + R R P G Q PR A G+S A +GG P +R
Sbjct: 740 GARGLSGKSG--PRGERGPTG-----PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL 792
Query: 146 PGGSGGRSHPGGPGSPRGGGTVG----PGDRGPAAADG 179
PG G PG G P G G PG RG G
Sbjct: 793 PGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQG 830
Score = 37.0 bits (84), Expect = 0.017
Identities = 47/166 (28%), Positives = 58/166 (34%), Gaps = 20/166 (12%)
Query: 30 GPRERHGPRTPGGQ--LPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHP 87
GP G R P G+ LPG+ PGP + + G+ G P+ A + +
Sbjct: 334 GPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQ 393
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPG-------- 139
AR P P RPG PL QP G S L G P
Sbjct: 394 QARLALRGPPGPMGYTGRPG--PLG----QPGSPGLKGESGDLGPQGPRGPQGLTGPPGK 447
Query: 140 VARAQRPGGSGGRSHPGGPGSPRGGGTVG----PGDRGPAAADGGR 181
R R G G R PG PG G G PG++G G +
Sbjct: 448 AGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ 493
Score = 35.0 bits (79), Expect = 0.066
Identities = 72/282 (25%), Positives = 88/282 (31%), Gaps = 61/282 (21%)
Query: 16 PRAASTTWVPCQI--CGPRERHGPRTPGGQLPGARRGPGP-------------------- 53
P AA VP + GP R G + P G LPG PG
Sbjct: 955 PGAAGEKGVPGEKGPIGPTGRDGVQGPVG-LPGPAGPPGVAGEDGDKGEVGDPGQKGTKG 1013
Query: 54 RRPAPLPARPPGALGSVLRPLRA----RPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGF 109
+ P PPG +G V +P A PG R + H A+ TR P G
Sbjct: 1014 NKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK-----GDEGTRGFNGPPGP 1068
Query: 110 PLAWGSPQPA----------PRPAPGRSSALALAG--------GAAPGVARAQRPGGSGG 151
G P P+ P PG AG G GV PG G
Sbjct: 1069 IGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE 1128
Query: 152 RSHPGGPGSPRGGGTVGP-GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHH 210
G PG G GP G+RG G + E P +GP + +
Sbjct: 1129 PGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTGDDGP-KGNP 1180
Query: 211 GTPALTQGPQSPRDGAQLGACTRPVDVRDSG--GRPLPPPDT 250
G P P +G G D + G G+P P T
Sbjct: 1181 GPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPT 1222
Score = 33.1 bits (74), Expect = 0.25
Identities = 47/168 (27%), Positives = 59/168 (35%), Gaps = 21/168 (12%)
Query: 30 GPRERHGPRTPGGQL-PGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPH-P 87
G R GP+ P G L P GP ++ P PG G++ P +P P P
Sbjct: 539 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP 598
Query: 88 AARCLPLRPHRP----TRRHRRPGG--FPLAWGSPQPAPRPAPGRSSALALAGGAA---- 137
+ P P + T+ ++ P G PL + P PR G L G
Sbjct: 599 GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGY----PGPRGVKGVDGIRGLKGHKGEKGE 654
Query: 138 ---PGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRP 182
PG G G R G PGS G GP R D G P
Sbjct: 655 DGFPGFKGDI--GVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPP 700
Score = 31.2 bits (69), Expect = 0.95
Identities = 37/126 (29%), Positives = 43/126 (34%), Gaps = 30/126 (23%)
Query: 124 PGRSSALALAGGAAPGVARAQRP-GGSGGRSHPGGPGSPRGGGTVGP------------- 169
PG L G PG+ P G G R PG G P G GP
Sbjct: 315 PGPEGPAGLIG--PPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGS 372
Query: 170 --GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTL-----EGPVQSHHGTPAL-----TQ 217
GD+GP A Q + R A PP + GP+ G+P L
Sbjct: 373 GGGDKGPVVA-AQEAQAQAILQQARLALRGPPGPMGYTGRPGPL-GQPGSPGLKGESGDL 430
Query: 218 GPQSPR 223
GPQ PR
Sbjct: 431 GPQGPR 436
Score = 30.0 bits (66), Expect = 2.1
Identities = 47/157 (29%), Positives = 54/157 (34%), Gaps = 28/157 (17%)
Query: 37 PRTPGGQLPGARRGP-GPRRPAPLPARPPGALG-------SVLRPLRARPGCRPRRPHPA 88
P +PG + GP GPR P L PPG G R + PG + R
Sbjct: 418 PGSPGLKGESGDLGPQGPRGPQGLTG-PPGKAGRRGRAGADGARGMPGDPGVKGDRGFDG 476
Query: 89 ARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAP-GVARAQRPG 147
LP + HR G A G P P PG G P G+ P
Sbjct: 477 LPGLP-----GEKGHRGDTG---AQGLPGP-----PGEDGERGDDGEIGPRGLPGESGPR 523
Query: 148 GS-GGRSHPGGPGSPRGGGTVGP----GDRGPAAADG 179
G G + PG PG P G GP G GP G
Sbjct: 524 GLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPG 560
Score = 28.9 bits (63), Expect = 4.7
Identities = 48/175 (27%), Positives = 60/175 (34%), Gaps = 25/175 (14%)
Query: 30 GPRERHGPR----TPGGQ-LPGARRGPGP---RRPAPLPARP--PGALGSVLRPLRARPG 79
GP+ GP TPG Q LPG + GP + P P P PG+ G P + P
Sbjct: 554 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPP 613
Query: 80 CRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGG---- 135
P+ PL P G L + PG + + G
Sbjct: 614 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEV 673
Query: 136 AAPGVARAQRPGGSGGRSHPGG-PGSPRGGGTVG----------PGDRGPAAADG 179
PG P G GR+ P G PG P G G PG +GP + G
Sbjct: 674 GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLG 728
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 53.9 bits (128), Expect = 1e-07
Identities = 73/239 (30%), Positives = 90/239 (37%), Gaps = 27/239 (11%)
Query: 36 GPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRP-LRARPGCRPRRPHPAARCLP- 93
GP P G P RGP A P PPG +G++ P + PG P + P
Sbjct: 1067 GPMGPPG--PPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPG---ESGSPGIQGEPG 1121
Query: 94 LRPHRPTRRHRRPGGFPLAWGSPQP-------APRPAPGRSSALALAGGAAPGVARAQ-- 144
++ R R + G P G P P P+ PG G G R Q
Sbjct: 1122 VKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG 1181
Query: 145 RPGGSGGRSHPGGPGSPRGGGTVGP----GDRGPAAADGGRPQRTVRAAE-TRGAAAAPP 199
G G PG PGSP G GP G RGPA + G ++ + A+ GA AP
Sbjct: 1182 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1241
Query: 200 LTLEGPVQSHHGTPALTQGPQSPRD-GAQLGACTRPVDVRDSG-GRPLPPPDTLASAGD 256
T GPV PA GP R +G RP +G P+ PP GD
Sbjct: 1242 KT--GPVGP--AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGD 1296
Score = 50.1 bits (118), Expect = 2e-06
Identities = 68/236 (28%), Positives = 81/236 (34%), Gaps = 47/236 (19%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPA--PLPARPPGALGSVLRPLRARPGCRPRRPHP 87
GPR G + GQ PG PGP+ P P PG +G P P P
Sbjct: 1124 GPRGERGEKGESGQ-PGEPGPPGPKGPTGDDGPKGNPGPVGF------------PGDPGP 1170
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGA-APGVARAQRP 146
P R + R G P GSP P P L G A +PG R
Sbjct: 1171 PGEGGP-RGQDGAKGDRGEDGEPGQPGSPGPTGENGP--PGPLGKRGPAGSPG--SEGRQ 1225
Query: 147 GGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADG-----------GRPQRTVRAAETR-- 192
GG G + PG G+P G VGP G G DG GRP T +A
Sbjct: 1226 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV 1285
Query: 193 GAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP 248
G P L + + G P L +G P + + G R LP P
Sbjct: 1286 GPPGLPGLRGDAGAKGEKGHPGL------------IGLIGPPGEQGEKGDRGLPGP 1329
Score = 47.4 bits (111), Expect = 1e-05
Identities = 58/192 (30%), Positives = 72/192 (37%), Gaps = 24/192 (12%)
Query: 25 PCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRP-LRARPGCRPR 83
P GP + GP G LPG+ G R A A PPG +G P LR G +
Sbjct: 1245 PVGPAGPAGKPGPDGLRG-LPGSVGQQG-RPGATGQAGPPGPVGPPGLPGLRGDAGAKGE 1302
Query: 84 RPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSP-QPAPRPAPGRSSALALAGGAAPGVAR 142
+ HP L P + R G P GSP Q PG S + G PG+
Sbjct: 1303 KGHPGLIGLIGPPGEQGEKGDR--GLPGPQGSPGQKGEMGIPGASGPIG--PGGPPGLPG 1358
Query: 143 AQRPGGSGGRSHPGGPGSPRG--GGTVGPGDRGPA--------------AADGGRPQRTV 186
P G+ G + PGGP +G G PG G + DG R +
Sbjct: 1359 PAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQED 1418
Query: 187 RAAETRGAAAAP 198
A T GA +P
Sbjct: 1419 EAIPTGGAPGSP 1430
Score = 43.1 bits (100), Expect = 2e-04
Identities = 50/155 (32%), Positives = 60/155 (38%), Gaps = 21/155 (13%)
Query: 31 PRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSV-----LRPLRARPGCRPRRP 85
P ER P T GG PG + GP P P PA PG G+ + P RPG P+ P
Sbjct: 880 PGERGLPGTAGG--PGLKGNEGPSGP-PGPAGSPGERGAAGSGGPIGP-PGRPG--PQGP 933
Query: 86 HPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQR 145
AA + + P G G P P P +A G V +
Sbjct: 934 PGAAG------EKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQ 987
Query: 146 PGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADG 179
G G + G PG P G +GP G G A ADG
Sbjct: 988 KGTKGNKGEHGPPGPP---GPIGPVGQPGAAGADG 1019
Score = 40.0 bits (92), Expect = 0.002
Identities = 54/203 (26%), Positives = 66/203 (32%), Gaps = 18/203 (8%)
Query: 25 PCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRR 84
P + GP+ G P G+ R PGP P P PG G P P +
Sbjct: 816 PPGVVGPQGAAGETGPMGE----RGHPGPPGP-PGEQGLPGTAGKEGTKGDPGPPGAPGK 870
Query: 85 PHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQ 144
PA LR R G P G+ P+ P P S A G+ +
Sbjct: 871 DGPAG----LRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPG 926
Query: 145 RPGGSGGRSHPGGPGSPRGGGTVGP----GDRGPAAADG-GRPQRTVRAAETRGAAAAPP 199
RPG G G G P G +GP G +GP G P +G P
Sbjct: 927 RPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPG 986
Query: 200 LTLEGPVQSHHGTPALTQGPQSP 222
+ HG P GP P
Sbjct: 987 QKGTKGNKGEHGPP----GPPGP 1005
Score = 38.1 bits (87), Expect = 0.008
Identities = 49/161 (30%), Positives = 57/161 (35%), Gaps = 32/161 (19%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPL--PARPPGALGSVLRPLRARPGCR----PR 83
GP G R G++ G R PG P L P PPG G PG R P+
Sbjct: 476 GPPGEDGERGDDGEI-GPRGLPGESGPRGLLGPKGPPGIPGP--------PGVRGMDGPQ 526
Query: 84 RPHPAARCLPLRPHRPTRRHRRPG--GFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVA 141
P + P P + PG G P G+ P P L PG+
Sbjct: 527 GPKGSLG--PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL-------PGM- 576
Query: 142 RAQRPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADGGR 181
PG G HPG G P G GP G +GP G R
Sbjct: 577 ----PGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 613
Score = 37.7 bits (86), Expect = 0.010
Identities = 49/158 (31%), Positives = 55/158 (34%), Gaps = 21/158 (13%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP--PGALGSVLRPLRARPGCRPRRPHP 87
GP+ R GP G PG G LP P G GS+ PG
Sbjct: 665 GPKGRTGPTGDPGP-PGLMGEKGKLGVPGLPGYPGRQGPKGSL-----GFPGFPGASGEK 718
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQR-- 145
AR L + R R P G Q PR A G+S A +GG P +R
Sbjct: 719 GARGLSGKSG--PRGERGPTG-----PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL 771
Query: 146 PGGSGGRSHPGGPGSPRGGGTVG----PGDRGPAAADG 179
PG G PG G P G G PG RG G
Sbjct: 772 PGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQG 809
Score = 37.0 bits (84), Expect = 0.017
Identities = 47/166 (28%), Positives = 58/166 (34%), Gaps = 20/166 (12%)
Query: 30 GPRERHGPRTPGGQ--LPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHP 87
GP G R P G+ LPG+ PGP + + G+ G P+ A + +
Sbjct: 313 GPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQ 372
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPG-------- 139
AR P P RPG PL QP G S L G P
Sbjct: 373 QARLALRGPPGPMGYTGRPG--PLG----QPGSPGLKGESGDLGPQGPRGPQGLTGPPGK 426
Query: 140 VARAQRPGGSGGRSHPGGPGSPRGGGTVG----PGDRGPAAADGGR 181
R R G G R PG PG G G PG++G G +
Sbjct: 427 AGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ 472
Score = 35.0 bits (79), Expect = 0.066
Identities = 72/282 (25%), Positives = 88/282 (31%), Gaps = 61/282 (21%)
Query: 16 PRAASTTWVPCQI--CGPRERHGPRTPGGQLPGARRGPGP-------------------- 53
P AA VP + GP R G + P G LPG PG
Sbjct: 934 PGAAGEKGVPGEKGPIGPTGRDGVQGPVG-LPGPAGPPGVAGEDGDKGEVGDPGQKGTKG 992
Query: 54 RRPAPLPARPPGALGSVLRPLRA----RPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGF 109
+ P PPG +G V +P A PG R + H A+ TR P G
Sbjct: 993 NKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK-----GDEGTRGFNGPPGP 1047
Query: 110 PLAWGSPQPA----------PRPAPGRSSALALAG--------GAAPGVARAQRPGGSGG 151
G P P+ P PG AG G GV PG G
Sbjct: 1048 IGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE 1107
Query: 152 RSHPGGPGSPRGGGTVGP-GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHH 210
G PG G GP G+RG G + E P +GP + +
Sbjct: 1108 PGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTGDDGP-KGNP 1159
Query: 211 GTPALTQGPQSPRDGAQLGACTRPVDVRDSG--GRPLPPPDT 250
G P P +G G D + G G+P P T
Sbjct: 1160 GPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPT 1201
Score = 34.7 bits (78), Expect = 0.086
Identities = 54/189 (28%), Positives = 66/189 (34%), Gaps = 46/189 (24%)
Query: 75 RARPGCRPRRPHPAARC---LPLRPHRPTRRHRR------PGGFPLAWGSP---QPAP-- 120
R RP + ++PH A R P R HRP + + P G G P +P
Sbjct: 233 RERP--QNQQPHRAQRSPQQQPSRLHRPQNQEPQSQAAHGPRGLKGEKGEPAVLEPGMLV 290
Query: 121 RPAPGRSSALALAGGAAPGVARAQRP-GGSGGRSHPGGPGSPRGGGTVGP---------- 169
PG L G PG+ P G G R PG G P G GP
Sbjct: 291 EGPPGPEGPAGLIG--PPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFR 348
Query: 170 -----GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTL-----EGPVQSHHGTPAL---- 215
GD+GP A Q + R A PP + GP+ G+P L
Sbjct: 349 FGSGGGDKGPVVA-AQEAQAQAILQQARLALRGPPGPMGYTGRPGPL-GQPGSPGLKGES 406
Query: 216 -TQGPQSPR 223
GPQ PR
Sbjct: 407 GDLGPQGPR 415
Score = 33.1 bits (74), Expect = 0.25
Identities = 47/168 (27%), Positives = 59/168 (35%), Gaps = 21/168 (12%)
Query: 30 GPRERHGPRTPGGQL-PGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPH-P 87
G R GP+ P G L P GP ++ P PG G++ P +P P P
Sbjct: 518 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP 577
Query: 88 AARCLPLRPHRP----TRRHRRPGG--FPLAWGSPQPAPRPAPGRSSALALAGGAA---- 137
+ P P + T+ ++ P G PL + P PR G L G
Sbjct: 578 GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGY----PGPRGVKGVDGIRGLKGHKGEKGE 633
Query: 138 ---PGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRP 182
PG G G R G PGS G GP R D G P
Sbjct: 634 DGFPGFKGDI--GVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPP 679
Score = 30.0 bits (66), Expect = 2.1
Identities = 47/157 (29%), Positives = 54/157 (34%), Gaps = 28/157 (17%)
Query: 37 PRTPGGQLPGARRGP-GPRRPAPLPARPPGALG-------SVLRPLRARPGCRPRRPHPA 88
P +PG + GP GPR P L PPG G R + PG + R
Sbjct: 397 PGSPGLKGESGDLGPQGPRGPQGLTG-PPGKAGRRGRAGADGARGMPGDPGVKGDRGFDG 455
Query: 89 ARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAP-GVARAQRPG 147
LP + HR G A G P P PG G P G+ P
Sbjct: 456 LPGLP-----GEKGHRGDTG---AQGLPGP-----PGEDGERGDDGEIGPRGLPGESGPR 502
Query: 148 GS-GGRSHPGGPGSPRGGGTVGP----GDRGPAAADG 179
G G + PG PG P G GP G GP G
Sbjct: 503 GLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPG 539
Score = 28.9 bits (63), Expect = 4.7
Identities = 48/175 (27%), Positives = 60/175 (34%), Gaps = 25/175 (14%)
Query: 30 GPRERHGPR----TPGGQ-LPGARRGPGP---RRPAPLPARP--PGALGSVLRPLRARPG 79
GP+ GP TPG Q LPG + GP + P P P PG+ G P + P
Sbjct: 533 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPP 592
Query: 80 CRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGG---- 135
P+ PL P G L + PG + + G
Sbjct: 593 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEV 652
Query: 136 AAPGVARAQRPGGSGGRSHPGG-PGSPRGGGTVG----------PGDRGPAAADG 179
PG P G GR+ P G PG P G G PG +GP + G
Sbjct: 653 GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLG 707
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 53.9 bits (128), Expect = 1e-07
Identities = 73/239 (30%), Positives = 90/239 (37%), Gaps = 27/239 (11%)
Query: 36 GPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRP-LRARPGCRPRRPHPAARCLP- 93
GP P G P RGP A P PPG +G++ P + PG P + P
Sbjct: 1174 GPMGPPG--PPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPG---ESGSPGIQGEPG 1228
Query: 94 LRPHRPTRRHRRPGGFPLAWGSPQP-------APRPAPGRSSALALAGGAAPGVARAQ-- 144
++ R R + G P G P P P+ PG G G R Q
Sbjct: 1229 VKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDG 1288
Query: 145 RPGGSGGRSHPGGPGSPRGGGTVGP----GDRGPAAADGGRPQRTVRAAE-TRGAAAAPP 199
G G PG PGSP G GP G RGPA + G ++ + A+ GA AP
Sbjct: 1289 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG 1348
Query: 200 LTLEGPVQSHHGTPALTQGPQSPRD-GAQLGACTRPVDVRDSG-GRPLPPPDTLASAGD 256
T GPV PA GP R +G RP +G P+ PP GD
Sbjct: 1349 KT--GPVGP--AGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGD 1403
Score = 50.1 bits (118), Expect = 2e-06
Identities = 68/236 (28%), Positives = 81/236 (34%), Gaps = 47/236 (19%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPA--PLPARPPGALGSVLRPLRARPGCRPRRPHP 87
GPR G + GQ PG PGP+ P P PG +G P P P
Sbjct: 1231 GPRGERGEKGESGQ-PGEPGPPGPKGPTGDDGPKGNPGPVGF------------PGDPGP 1277
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGA-APGVARAQRP 146
P R + R G P GSP P P L G A +PG R
Sbjct: 1278 PGEGGP-RGQDGAKGDRGEDGEPGQPGSPGPTGENGP--PGPLGKRGPAGSPG--SEGRQ 1332
Query: 147 GGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADG-----------GRPQRTVRAAETR-- 192
GG G + PG G+P G VGP G G DG GRP T +A
Sbjct: 1333 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPV 1392
Query: 193 GAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP 248
G P L + + G P L +G P + + G R LP P
Sbjct: 1393 GPPGLPGLRGDAGAKGEKGHPGL------------IGLIGPPGEQGEKGDRGLPGP 1436
Score = 47.4 bits (111), Expect = 1e-05
Identities = 58/192 (30%), Positives = 72/192 (37%), Gaps = 24/192 (12%)
Query: 25 PCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRP-LRARPGCRPR 83
P GP + GP G LPG+ G R A A PPG +G P LR G +
Sbjct: 1352 PVGPAGPAGKPGPDGLRG-LPGSVGQQG-RPGATGQAGPPGPVGPPGLPGLRGDAGAKGE 1409
Query: 84 RPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSP-QPAPRPAPGRSSALALAGGAAPGVAR 142
+ HP L P + R G P GSP Q PG S + G PG+
Sbjct: 1410 KGHPGLIGLIGPPGEQGEKGDR--GLPGPQGSPGQKGEMGIPGASGPIG--PGGPPGLPG 1465
Query: 143 AQRPGGSGGRSHPGGPGSPRG--GGTVGPGDRGPA--------------AADGGRPQRTV 186
P G+ G + PGGP +G G PG G + DG R +
Sbjct: 1466 PAGPKGAKGATGPGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQED 1525
Query: 187 RAAETRGAAAAP 198
A T GA +P
Sbjct: 1526 EAIPTGGAPGSP 1537
Score = 43.1 bits (100), Expect = 2e-04
Identities = 50/155 (32%), Positives = 60/155 (38%), Gaps = 21/155 (13%)
Query: 31 PRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSV-----LRPLRARPGCRPRRP 85
P ER P T GG PG + GP P P PA PG G+ + P RPG P+ P
Sbjct: 987 PGERGLPGTAGG--PGLKGNEGPSGP-PGPAGSPGERGAAGSGGPIGP-PGRPG--PQGP 1040
Query: 86 HPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQR 145
AA + + P G G P P P +A G V +
Sbjct: 1041 PGAAG------EKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQ 1094
Query: 146 PGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADG 179
G G + G PG P G +GP G G A ADG
Sbjct: 1095 KGTKGNKGEHGPPGPP---GPIGPVGQPGAAGADG 1126
Score = 40.0 bits (92), Expect = 0.002
Identities = 54/203 (26%), Positives = 66/203 (32%), Gaps = 18/203 (8%)
Query: 25 PCQICGPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRR 84
P + GP+ G P G+ R PGP P P PG G P P +
Sbjct: 923 PPGVVGPQGAAGETGPMGE----RGHPGPPGP-PGEQGLPGTAGKEGTKGDPGPPGAPGK 977
Query: 85 PHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQ 144
PA LR R G P G+ P+ P P S A G+ +
Sbjct: 978 DGPAG----LRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPG 1033
Query: 145 RPGGSGGRSHPGGPGSPRGGGTVGP----GDRGPAAADG-GRPQRTVRAAETRGAAAAPP 199
RPG G G G P G +GP G +GP G P +G P
Sbjct: 1034 RPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPG 1093
Query: 200 LTLEGPVQSHHGTPALTQGPQSP 222
+ HG P GP P
Sbjct: 1094 QKGTKGNKGEHGPP----GPPGP 1112
Score = 38.1 bits (87), Expect = 0.008
Identities = 49/161 (30%), Positives = 57/161 (35%), Gaps = 32/161 (19%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPL--PARPPGALGSVLRPLRARPGCR----PR 83
GP G R G++ G R PG P L P PPG G PG R P+
Sbjct: 583 GPPGEDGERGDDGEI-GPRGLPGESGPRGLLGPKGPPGIPGP--------PGVRGMDGPQ 633
Query: 84 RPHPAARCLPLRPHRPTRRHRRPG--GFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVA 141
P + P P + PG G P G+ P P L PG+
Sbjct: 634 GPKGSLG--PQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGL-------PGM- 683
Query: 142 RAQRPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADGGR 181
PG G HPG G P G GP G +GP G R
Sbjct: 684 ----PGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR 720
Score = 37.7 bits (86), Expect = 0.010
Identities = 49/158 (31%), Positives = 55/158 (34%), Gaps = 21/158 (13%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARP--PGALGSVLRPLRARPGCRPRRPHP 87
GP+ R GP G PG G LP P G GS+ PG
Sbjct: 772 GPKGRTGPTGDPGP-PGLMGEKGKLGVPGLPGYPGRQGPKGSL-----GFPGFPGASGEK 825
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQR-- 145
AR L + R R P G Q PR A G+S A +GG P +R
Sbjct: 826 GARGLSGKSG--PRGERGPTG-----PRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGL 878
Query: 146 PGGSGGRSHPGGPGSPRGGGTVG----PGDRGPAAADG 179
PG G PG G P G G PG RG G
Sbjct: 879 PGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQG 916
Score = 37.0 bits (84), Expect = 0.017
Identities = 47/166 (28%), Positives = 58/166 (34%), Gaps = 20/166 (12%)
Query: 30 GPRERHGPRTPGGQ--LPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHP 87
GP G R P G+ LPG+ PGP + + G+ G P+ A + +
Sbjct: 420 GPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQ 479
Query: 88 AARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPG-------- 139
AR P P RPG PL QP G S L G P
Sbjct: 480 QARLALRGPPGPMGYTGRPG--PLG----QPGSPGLKGESGDLGPQGPRGPQGLTGPPGK 533
Query: 140 VARAQRPGGSGGRSHPGGPGSPRGGGTVG----PGDRGPAAADGGR 181
R R G G R PG PG G G PG++G G +
Sbjct: 534 AGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQ 579
Score = 35.0 bits (79), Expect = 0.066
Identities = 72/282 (25%), Positives = 88/282 (31%), Gaps = 61/282 (21%)
Query: 16 PRAASTTWVPCQI--CGPRERHGPRTPGGQLPGARRGPGP-------------------- 53
P AA VP + GP R G + P G LPG PG
Sbjct: 1041 PGAAGEKGVPGEKGPIGPTGRDGVQGPVG-LPGPAGPPGVAGEDGDKGEVGDPGQKGTKG 1099
Query: 54 RRPAPLPARPPGALGSVLRPLRA----RPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGF 109
+ P PPG +G V +P A PG R + H A+ TR P G
Sbjct: 1100 NKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK-----GDEGTRGFNGPPGP 1154
Query: 110 PLAWGSPQPA----------PRPAPGRSSALALAG--------GAAPGVARAQRPGGSGG 151
G P P+ P PG AG G GV PG G
Sbjct: 1155 IGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGE 1214
Query: 152 RSHPGGPGSPRGGGTVGP-GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHH 210
G PG G GP G+RG G + E P +GP + +
Sbjct: 1215 PGESGSPGIQGEPGVKGPRGERGEKGESG-------QPGEPGPPGPKGPTGDDGP-KGNP 1266
Query: 211 GTPALTQGPQSPRDGAQLGACTRPVDVRDSG--GRPLPPPDT 250
G P P +G G D + G G+P P T
Sbjct: 1267 GPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPT 1308
Score = 33.1 bits (74), Expect = 0.25
Identities = 47/168 (27%), Positives = 59/168 (35%), Gaps = 21/168 (12%)
Query: 30 GPRERHGPRTPGGQL-PGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPH-P 87
G R GP+ P G L P GP ++ P PG G++ P +P P P
Sbjct: 625 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP 684
Query: 88 AARCLPLRPHRP----TRRHRRPGG--FPLAWGSPQPAPRPAPGRSSALALAGGAA---- 137
+ P P + T+ ++ P G PL + P PR G L G
Sbjct: 685 GSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGY----PGPRGVKGVDGIRGLKGHKGEKGE 740
Query: 138 ---PGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRP 182
PG G G R G PGS G GP R D G P
Sbjct: 741 DGFPGFKGDI--GVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPP 786
Score = 31.2 bits (69), Expect = 0.95
Identities = 37/126 (29%), Positives = 43/126 (34%), Gaps = 30/126 (23%)
Query: 124 PGRSSALALAGGAAPGVARAQRP-GGSGGRSHPGGPGSPRGGGTVGP------------- 169
PG L G PG+ P G G R PG G P G GP
Sbjct: 401 PGPEGPAGLIG--PPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGS 458
Query: 170 --GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTL-----EGPVQSHHGTPAL-----TQ 217
GD+GP A Q + R A PP + GP+ G+P L
Sbjct: 459 GGGDKGPVVA-AQEAQAQAILQQARLALRGPPGPMGYTGRPGPL-GQPGSPGLKGESGDL 516
Query: 218 GPQSPR 223
GPQ PR
Sbjct: 517 GPQGPR 522
Score = 30.0 bits (66), Expect = 2.1
Identities = 47/157 (29%), Positives = 54/157 (34%), Gaps = 28/157 (17%)
Query: 37 PRTPGGQLPGARRGP-GPRRPAPLPARPPGALG-------SVLRPLRARPGCRPRRPHPA 88
P +PG + GP GPR P L PPG G R + PG + R
Sbjct: 504 PGSPGLKGESGDLGPQGPRGPQGLTG-PPGKAGRRGRAGADGARGMPGDPGVKGDRGFDG 562
Query: 89 ARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAP-GVARAQRPG 147
LP + HR G A G P P PG G P G+ P
Sbjct: 563 LPGLP-----GEKGHRGDTG---AQGLPGP-----PGEDGERGDDGEIGPRGLPGESGPR 609
Query: 148 GS-GGRSHPGGPGSPRGGGTVGP----GDRGPAAADG 179
G G + PG PG P G GP G GP G
Sbjct: 610 GLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPG 646
Score = 28.9 bits (63), Expect = 4.7
Identities = 48/175 (27%), Positives = 60/175 (34%), Gaps = 25/175 (14%)
Query: 30 GPRERHGPR----TPGGQ-LPGARRGPGP---RRPAPLPARP--PGALGSVLRPLRARPG 79
GP+ GP TPG Q LPG + GP + P P P PG+ G P + P
Sbjct: 640 GPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPP 699
Query: 80 CRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGG---- 135
P+ PL P G L + PG + + G
Sbjct: 700 GTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEV 759
Query: 136 AAPGVARAQRPGGSGGRSHPGG-PGSPRGGGTVG----------PGDRGPAAADG 179
PG P G GR+ P G PG P G G PG +GP + G
Sbjct: 760 GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLG 814
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 53.1 bits (126), Expect = 2e-07
Identities = 79/255 (30%), Positives = 90/255 (35%), Gaps = 49/255 (19%)
Query: 30 GPRE-RHGPRTPGGQLPGARRGPG----PRRPAPLPARPPG-----ALGSVLR--PLRAR 77
GP+ +H P PGG +PG GPG PR P P G G +R P+R
Sbjct: 636 GPKGMQHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGG 695
Query: 78 PGCRPRRPHPAARCL-------PLRPHRPTRRHRRPGGFPLAWGSPQPAP------RPAP 124
PG P H P P R R R GG P G P RP
Sbjct: 696 PGPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHE 755
Query: 125 GRSSALALAGGAAPGVARAQRPGG---SGGRSHPGGPGSPRGGG----TVGPGDRGPAAA 177
G + + G P + PGG SG R H G GS GGG GPG G +
Sbjct: 756 GPGGGMGNSSGHRPH----EGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG-GISGG 810
Query: 178 DGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGA--CTRPV 235
G RP G P EGP S G+ G P +G G RP
Sbjct: 811 SGHRPHEGPGGGMGAGGGHRPH---EGPGGSMGGS-----GGHRPHEGPGHGGPHGHRPH 862
Query: 236 DVRDSGGRPL--PPP 248
DV G PPP
Sbjct: 863 DVPGHRGHDHRGPPP 877
Score = 39.3 bits (90), Expect = 0.003
Identities = 56/181 (30%), Positives = 59/181 (32%), Gaps = 60/181 (33%)
Query: 24 VPCQICGPRERHGPRTPGGQLPGARRG-----PGPRRPAPLPARPPGALGSVLRPLRARP 78
VP + GP PGG PG +G PGP P P P PG G V
Sbjct: 615 VPHGLLGPGPIANGFPPGG--PGGPKGMQHFPPGPGGPMPGPHGGPG--GPV-------- 662
Query: 79 GCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAP 138
G R P P R GG P W P R P R GG P
Sbjct: 663 GPRLLGPPPPPR----------------GGDPF-WDGPGDPMRGGPMR-------GGPGP 698
Query: 139 GVARAQR-PGGSGGRSHP---------------GGPGSPR---GGGTVGPGDRGPAAADG 179
G R GG GG P GGP + R GGG VG G P G
Sbjct: 699 GPGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPG 758
Query: 180 G 180
G
Sbjct: 759 G 759
Score = 37.7 bits (86), Expect = 0.010
Identities = 35/116 (30%), Positives = 37/116 (31%), Gaps = 19/116 (16%)
Query: 146 PGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGP 205
PG PGGPG P+G PG GP G P G P L GP
Sbjct: 622 PGPIANGFPPGGPGGPKGMQHFPPGPGGPMPGPHGGP----------GGPVGPRLL--GP 669
Query: 206 VQSHHGTPALTQGPQSPRDGAQLGACTRPVD---VRDSGGR----PLPPPDTLASA 254
G GP P G + P R GGR P PPP A
Sbjct: 670 PPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEPPPPPPPFRGA 725
>gi|21955170 single stranded DNA binding protein 3 isoform a [Homo
sapiens]
Length = 388
Score = 53.1 bits (126), Expect = 2e-07
Identities = 58/223 (26%), Positives = 81/223 (36%), Gaps = 32/223 (14%)
Query: 31 PRERHGPRTP---GGQLPGARRGPGPRRPAPL-PARPPGA--LGSVLRPLRARPGCRPRR 84
PR GPR P G Q PG G P P + P R G +G ++ + G P
Sbjct: 154 PRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG 213
Query: 85 PHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALA----------G 134
P P +RP + PG + G+ +P P P S + + G
Sbjct: 214 PGPQNYGSGMRPPPNSLGPAMPG-INMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGG 272
Query: 135 GAAPGVARAQRPGGSGGRS-------HPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVR 187
G PG P S S +P PG R +GPG GP GG +
Sbjct: 273 GGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMN 332
Query: 188 AAETRGAAAAPPLTLEG-PVQSHHGTPALTQGPQSPRDGAQLG 229
+ G ++G P S + ++ P +PRD +LG
Sbjct: 333 GSLGSG-------DIDGLPKNSPNNISGISNPPGTPRDDGELG 368
>gi|58218981 single stranded DNA binding protein 3 isoform c [Homo
sapiens]
Length = 361
Score = 53.1 bits (126), Expect = 2e-07
Identities = 58/223 (26%), Positives = 81/223 (36%), Gaps = 32/223 (14%)
Query: 31 PRERHGPRTP---GGQLPGARRGPGPRRPAPL-PARPPGA--LGSVLRPLRARPGCRPRR 84
PR GPR P G Q PG G P P + P R G +G ++ + G P
Sbjct: 127 PRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMG 186
Query: 85 PHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALA----------G 134
P P +RP + PG + G+ +P P P S + + G
Sbjct: 187 PGPQNYGSGMRPPPNSLGPAMPG-INMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGG 245
Query: 135 GAAPGVARAQRPGGSGGRS-------HPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVR 187
G PG P S S +P PG R +GPG GP GG +
Sbjct: 246 GGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMGGMEPHHMN 305
Query: 188 AAETRGAAAAPPLTLEG-PVQSHHGTPALTQGPQSPRDGAQLG 229
+ G ++G P S + ++ P +PRD +LG
Sbjct: 306 GSLGSG-------DIDGLPKNSPNNISGISNPPGTPRDDGELG 341
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 52.8 bits (125), Expect = 3e-07
Identities = 55/200 (27%), Positives = 66/200 (33%), Gaps = 21/200 (10%)
Query: 50 GPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGF 109
GPGP + P P PP P + + P++P P PH+P
Sbjct: 48 GPGPGQSGPKPPIPPPP------PHQQQQQPPPQQPPPQQP----PPHQPPPH------- 90
Query: 110 PLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGP 169
P QP P P +A G APGV A S + P G+P G G GP
Sbjct: 91 PQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGP-GP 149
Query: 170 GDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGP-QSPRDGAQL 228
P A P + G PP GP P GP Q P G
Sbjct: 150 TPTPPPAVTSAPPGAPPPTPPSSGVPTTPP-QAGGPPPPPAAVPGPGPGPKQGPGPGGPK 208
Query: 229 GACTRPVDVRDSGGRPLPPP 248
G P + GG L P
Sbjct: 209 GG-KMPGGPKPGGGPGLSTP 227
Score = 48.9 bits (115), Expect = 4e-06
Identities = 48/170 (28%), Positives = 59/170 (34%), Gaps = 42/170 (24%)
Query: 37 PRTP--GGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAARCLPL 94
P TP G PG+ GP P P + + PPGA P P + +P
Sbjct: 133 PATPPTSGAPPGSGPGPTPTPPPAVTSAPPGA----------------PPPTPPSSGVPT 176
Query: 95 RPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSH 154
P + P P P P P+ PG GG PG +PGG G S
Sbjct: 177 TPPQAGGPPPPPAAVP----GPGPGPKQGPGPGGP---KGGKMPG---GPKPGGGPGLST 226
Query: 155 PGGP--------GSPRGGGTVGP------GDRGPAAADGGRPQRTVRAAE 190
PGG G PRGG P P GGR + + +E
Sbjct: 227 PGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPGGRSEEKISDSE 276
Score = 48.5 bits (114), Expect = 6e-06
Identities = 46/161 (28%), Positives = 54/161 (33%), Gaps = 19/161 (11%)
Query: 31 PRERHGPRTP--GGQLPGARRGPGPR-----RPAPLPARPPGALGSVLRPLRARPGCRPR 83
P ++ P P P +GPGP P + PP + P + PG P
Sbjct: 93 PHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPT 152
Query: 84 RPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARA 143
P PA P PT P G P P P PG PG +
Sbjct: 153 PP-PAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPG----------PGPGPKQG 201
Query: 144 QRPGGSGGRSHPGGPGSPRGGGTVGPGDR-GPAAADGGRPQ 183
PGG G PGGP G G PG P GG P+
Sbjct: 202 PGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPR 242
Score = 30.4 bits (67), Expect = 1.6
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 126 RSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRT 185
R + + GG A + P GSGG+ P G G PG P A G +
Sbjct: 606 RERDMRMGGGGAMNMGD---PYGSGGQKFPPLGGGGGIGYEANPGV--PPATMSGSMMGS 660
Query: 186 VRAAETRGAAAAPPLTLEGPVQSHHGTPA 214
E G A P+ +GP GTPA
Sbjct: 661 DMRTERFGQGGAGPVGGQGPRGMGPGTPA 689
Score = 29.6 bits (65), Expect = 2.8
Identities = 35/132 (26%), Positives = 45/132 (34%), Gaps = 11/132 (8%)
Query: 134 GGAAPGVARAQRPGGSGG----RSHPGGPGSPRGGGTVGPGDRGPAAADGGRPQRTVRAA 189
GG G R GG GG RS P G G + G +GPG G + P
Sbjct: 10 GGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGP-GQSGPKPPIPPPPPHQQ 68
Query: 190 ETRGAAAAPPLTLEGPVQ--SHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRP--- 244
+ + PP P Q H Q P P+D ++ P G P
Sbjct: 69 QQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPAS 128
Query: 245 -LPPPDTLASAG 255
PP T ++G
Sbjct: 129 SSAPPATPPTSG 140
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 52.4 bits (124), Expect = 4e-07
Identities = 76/281 (27%), Positives = 91/281 (32%), Gaps = 81/281 (28%)
Query: 30 GPRERHGPRTPGGQ--------LPGARRG------PGPRRPAPLPAR--------PPGAL 67
GP + GP P GQ PGAR PGP+ A P + PPGA+
Sbjct: 548 GPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV 607
Query: 68 GSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA---- 123
G + A P PA R + P G P G P PA P
Sbjct: 608 GPAGKDGEAGAQGPPGPAGPAGE----------RGEQGPAGSPGFQGLPGPAGPPGEAGK 657
Query: 124 PGRSSALALAGGAAPGVARAQR-----------------------PGGSGGRSHPGGPGS 160
PG G P AR +R PG G + G PG+
Sbjct: 658 PGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGA 717
Query: 161 PRGGGTVG----PGDRGPAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALT 216
P G G PG+RG A G + R A +GA +P G LT
Sbjct: 718 PGSQGAPGLQGMPGERGAAGLPGPKGDR--GDAGPKGADGSP---------GKDGVRGLT 766
Query: 217 QGPQSPRDGAQLGACTRPVDVRDSG-GRPLPPPDTLASAGD 256
GP P G P D +SG P P + GD
Sbjct: 767 -GPIGPP-----GPAGAPGDKGESGPSGPAGPTGARGAPGD 801
Score = 49.7 bits (117), Expect = 3e-06
Identities = 58/166 (34%), Positives = 63/166 (37%), Gaps = 25/166 (15%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPL--------PARPPGALGSVLRPLRARPGCR 81
G R GP P G PGA PGP PA PA P G +G P+ AR
Sbjct: 1034 GDRGETGPAGPPGA-PGAPGAPGPVGPAGKSGDRGETGPAGPAGPVG----PVGARGPAG 1088
Query: 82 PRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAP-GRSSALALAGGAAPGV 140
P+ P + R + HR GF G P P P G S A AG P
Sbjct: 1089 PQGPRGDKGETGEQGDRGIKGHR---GFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP- 1144
Query: 141 ARAQRPGGSGGRSHPG--GPGSPRG----GGTVG-PGDRGPAAADG 179
A PG G PG GP PRG G VG PG GP G
Sbjct: 1145 GSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPG 1190
Score = 49.3 bits (116), Expect = 3e-06
Identities = 63/197 (31%), Positives = 68/197 (34%), Gaps = 27/197 (13%)
Query: 31 PRERHGPRTPGGQ-LPGARRGPGPRRPAPLPARP-PGALGSVLRPLRARPGCRPRRPHPA 88
P E P G + LPG R PG P P AR GA G+ P P P P
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGA--PGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAV 349
Query: 89 ARCLPLRPHRPTRRHRRPGGFPLAWGSPQPA----PRPAPGRSSALALAGG-AAPGVARA 143
P P R P G G P PA P PG G APG+A A
Sbjct: 350 GAKGEAGPQGP-RGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGA 408
Query: 144 QRPGGSGGRSHPGGPGSPRG--------------GGTVGPGDRGPAAADGGRPQRTVRAA 189
G+ G S P GPG P G G T G+ GP G P
Sbjct: 409 PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQG--PPGPAGEE 466
Query: 190 ETRGAAAAP-PLTLEGP 205
RGA P P L GP
Sbjct: 467 GKRGARGEPGPTGLPGP 483
Score = 49.3 bits (116), Expect = 3e-06
Identities = 68/209 (32%), Positives = 76/209 (36%), Gaps = 38/209 (18%)
Query: 30 GPRERHGPR-------TPGGQLPGARRG-PGPRRPAPLPARPPGALGSVLRPLRARPGCR 81
GPR GP PG P +G PG PA P P + R + PG R
Sbjct: 908 GPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQR 967
Query: 82 PRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA----PGRSSALALAGGAA 137
R P LP P ++ P G G P P P PG S A GA
Sbjct: 968 GERGFPG---LPGPSGEPGKQG--PSGASGERGPPGPMGPPGLAGPPGESGREG-APGAE 1021
Query: 138 PGVARAQRPGGSGGRSHPGG---PGSPRGGGTVGPGDRGPAAADGGRPQRTVRAAETRGA 194
R PG G R G PG+P G PG GPA G R ET A
Sbjct: 1022 GSPGRDGSPGAKGDRGETGPAGPPGAP--GAPGAPGPVGPAGKSGDR-------GETGPA 1072
Query: 195 AAAPPLTLEGPVQSHHGTPALTQGPQSPR 223
A P+ GPV + PA GPQ PR
Sbjct: 1073 GPAGPV---GPVGAR--GPA---GPQGPR 1093
Score = 48.9 bits (115), Expect = 4e-06
Identities = 81/293 (27%), Positives = 94/293 (32%), Gaps = 66/293 (22%)
Query: 11 CP--CQVPRAASTTWV--PCQICGPRERHGPRTPGGQ--LPGARRGPGPRRPAPLPARPP 64
CP + P TT V P GPR GP P G+ +PG PGP P P P PP
Sbjct: 95 CPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGP-PGPPGPP 153
Query: 65 GALGSVL--------------------------RPLRARPGCR--------PRRPHPAAR 90
G G+ R L PG P P
Sbjct: 154 GLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGA 213
Query: 91 CLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQR----- 145
P+ P P + G A +P R PG A L G A + R
Sbjct: 214 SGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGL 273
Query: 146 ------PGGSGGRSHPGGPGSPRGGGTVG----PGDRGPAAADGGRPQRTVRAAETRGAA 195
G +G + PG PG G +G PG+RG A G R A GAA
Sbjct: 274 DGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGA--TGAA 331
Query: 196 AAP-PLTLEGPVQSHHGTPALTQ-GPQSPRDGAQLGACTRPVDVRDSGGRPLP 246
P P GP A + GPQ PR P VR G P P
Sbjct: 332 GPPGPTGPAGPPGFPGAVGAKGEAGPQGPR------GSEGPQGVRGEPGPPGP 378
Score = 48.1 bits (113), Expect = 8e-06
Identities = 76/261 (29%), Positives = 86/261 (32%), Gaps = 47/261 (18%)
Query: 30 GPRERHGPRTPGGQ-----------LPGARRGPGPR-RPAPLPAR-PPGALGSVLRPLRA 76
G R GP+ PGG PG++ G + P P+ + PPG G
Sbjct: 413 GARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGE------- 465
Query: 77 RPGCRPRRPHPAARCLPLRPHRPTRRHRRPG--GFPLAWGSPQPAPRPAPGRSSALALAG 134
G R R P LP P PG GFP A G P PA R S
Sbjct: 466 -EGKRGARGEPGPTGLP----GPPGERGGPGSRGFPGADGVAGPKG-PAGERGSPGPAGP 519
Query: 135 GAAPGVA-RAQRPGGSGGRSHPGGPGSPRGGGTVGP-------GDRGPAAADGGRPQRTV 186
+PG A R G G + G PGSP G GP G GP G R Q V
Sbjct: 520 KGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGV 579
Query: 187 RA-AETRGAAAAPPLTLEGPVQSHHGT--------PALTQGPQSPRDGAQLGACTRPVDV 237
+GAA P E V G A QGP P A P
Sbjct: 580 MGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGS 639
Query: 238 RDSGGRPLP--PPDTLASAGD 256
G P P PP G+
Sbjct: 640 PGFQGLPGPAGPPGEAGKPGE 660
Score = 48.1 bits (113), Expect = 8e-06
Identities = 59/177 (33%), Positives = 65/177 (36%), Gaps = 31/177 (17%)
Query: 25 PCQICGPRERHGPRTPGGQL-----PGARRGPGPRRPAPLPARPPGALGSVLRPLRARPG 79
P G + GP P G PG R PGP PA A PPGA G + PG
Sbjct: 774 PAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGF-AGPPGADGQP--GAKGEPG 830
Query: 80 CRPRR-----PHPAARCLPLRPHRPTRRHRRPG--------GFPLAWGSPQPAPRPAPGR 126
+ P PA P P P PG G P A G P A R P
Sbjct: 831 DAGAKGDAGPPGPAG---PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPG 887
Query: 127 SSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRGGGTVGP----GDRGPAAADG 179
S A G PG A + GG G R G G P G GP G++G ADG
Sbjct: 888 PSGNAGPPG-PPG--PAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADG 941
Score = 48.1 bits (113), Expect = 8e-06
Identities = 64/222 (28%), Positives = 74/222 (33%), Gaps = 46/222 (20%)
Query: 30 GPRERHGPRTP-------GGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRP 82
GP GP P GG+ P GP R P PPG G P P P
Sbjct: 887 GPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAP 946
Query: 83 RRPHPAARCLPLRPHR-----PTRRHRRPGGFPLAWGSPQPAPRPA-------------P 124
P P + R P +R R GFP G P P+ P P
Sbjct: 947 GTPGPQG----IAGQRGVVGLPGQRGER--GFP---GLPGPSGEPGKQGPSGASGERGPP 997
Query: 125 GRSSALALAGGAAPGVA-RAQRPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAADG--GR 181
G LAG PG + R PG G G PG+ G GP GP A G G
Sbjct: 998 GPMGPPGLAG--PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPA--GPPGAPGAPGA 1053
Query: 182 PQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPR 223
P A ++ P GPV P +GP P+
Sbjct: 1054 PGPVGPAGKSGDRGETGPAGPAGPV-----GPVGARGPAGPQ 1090
Score = 42.7 bits (99), Expect = 3e-04
Identities = 67/228 (29%), Positives = 77/228 (33%), Gaps = 49/228 (21%)
Query: 33 ERHGPRTPGGQLPGARRGP----GPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPA 88
ER P PG ++GP G R P P P PPG G PG R P
Sbjct: 969 ERGFPGLPGPSGEPGKQGPSGASGERGP-PGPMGPPGLAGP--------PGESGREGAPG 1019
Query: 89 ARCLPLRPHRPTRRHRR----PGGFPLAWGSP-QPAPRPAPGRSSALALAGGAAP----- 138
A P R P + R P G P A G+P P P G+S G A P
Sbjct: 1020 AEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVG 1079
Query: 139 -----GVARAQRPGGSGGRSHPGG----------------PGSPRGGGTVGP-GDRGPAA 176
G A Q P G G + G PG P G GP G GPA
Sbjct: 1080 PVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAG 1139
Query: 177 ADGGRPQRTVRAAETRGAAAAP-PLTLEGP-VQSHHGTPALTQGPQSP 222
G P + A G P P+ GP ++ P GP P
Sbjct: 1140 PRG--PPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP 1185
Score = 42.0 bits (97), Expect = 5e-04
Identities = 67/228 (29%), Positives = 79/228 (34%), Gaps = 31/228 (13%)
Query: 37 PRTPGGQ-LPGARRGPGPRRPAPLP--------ARPPGALGSV----LRPLRARPGCRPR 83
P PG Q PG + PG R A LP A P GA GS +R L G
Sbjct: 715 PGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIG---- 770
Query: 84 RPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARA 143
P PA P+ P G A G+P P P + A GA
Sbjct: 771 PPGPAGAPGDKGESGPSG----PAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAK 826
Query: 144 QRPGGSGGRSHPGGPGSPRGGGTVGP-GDRGPAAADGGRPQRTVRAAETRGAAA---APP 199
PG +G + G PG G GP G+ G A G R A AA PP
Sbjct: 827 GEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPP 886
Query: 200 LTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPP 247
PA +G + PR + G RP +V G P PP
Sbjct: 887 GPSGNAGPPGPPGPAGKEGGKGPR--GETGPAGRPGEV----GPPGPP 928
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 52.4 bits (124), Expect = 4e-07
Identities = 65/238 (27%), Positives = 75/238 (31%), Gaps = 47/238 (19%)
Query: 45 PGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGC----RPRRPHPAARCLPLRPHRPT 100
P G GP PA PGA RARPG RP P P +P P P
Sbjct: 67 PAGAAGAGPAAPAE---GAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPA 123
Query: 101 RRHRRPGGFPLAWGSPQPA-------PRPAPGR----SSALALAGGAAPGVARAQRPGGS 149
+ R P +P PA P PAP + ALA A PG PG
Sbjct: 124 AKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPG 183
Query: 150 GGRSHPGGPGSPR--------------GGGTVGPGDRGPAA----ADGGRPQRTVRAAET 191
G P GPG+ + V + GPAA P ++
Sbjct: 184 PGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPF 243
Query: 192 RGAAAAP-PLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP 248
GAAA P P P PA P P P + G P PP
Sbjct: 244 VGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPP----------APATLARPPGHPAGPP 291
Score = 51.6 bits (122), Expect = 7e-07
Identities = 74/247 (29%), Positives = 88/247 (35%), Gaps = 53/247 (21%)
Query: 6 GSAQACPCQVPRAASTTWVPCQI-CGPRERHGPRT---PGGQLPGARRGPGPRRPAPLPA 61
GSA +C VP AA+ P GP + GP G PG GPG P P P
Sbjct: 132 GSAGSC-APVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPG---PGPGPG 187
Query: 62 RP--PGALGSV--------------------------LRPL--RARPGCRPRRPHPAARC 91
+P PGA ++ L PL A PG + P
Sbjct: 188 KPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAA 247
Query: 92 LPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPA-----PGRSSALALAGGAAPGVARAQRP 146
P P P+ P A P P P PA PG + A A P A AQ
Sbjct: 248 APPAPAAPSPPAAPAPAAPAA-APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNG 306
Query: 147 GGSGGRSHPG-GPGSPRG-GGTVGPGDRGPAAADGGR---PQRTVRAAETRGAAAAPPLT 201
G +G P G P G G GPG A A G + P+R V+AA AA L
Sbjct: 307 GSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAA----PPAAQTLA 362
Query: 202 LEGPVQS 208
GP +
Sbjct: 363 ASGPAST 369
Score = 50.8 bits (120), Expect = 1e-06
Identities = 62/218 (28%), Positives = 75/218 (34%), Gaps = 20/218 (9%)
Query: 50 GPGPRRPAPLPARP------PGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRH 103
GP P P PA P P +G+ P A P P P PAA P P
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPS-PPAAPAPAAPAAAPPPPPPAPAT 279
Query: 104 -RRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPR 162
RP G P G P AP P ++ + GAAP A A GG G S GPG+
Sbjct: 280 LARPPGHPA--GPPTAAPAVPPPAAAQNGGSAGAAPAPAPAA--GGPAGVSGQPGPGAAA 335
Query: 163 GGGTVGPGDRGPAAADGGRPQRTVRAAETRGAAAAPPL----TLEGPVQSHHGTPALTQG 218
G P P A + A+ A + T++G + S P G
Sbjct: 336 AAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPG 395
Query: 219 PQSPRDGAQLGACT----RPVDVRDSGGRPLPPPDTLA 252
+ GA T R SG R P LA
Sbjct: 396 TPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLA 433
Score = 42.4 bits (98), Expect = 4e-04
Identities = 62/240 (25%), Positives = 78/240 (32%), Gaps = 45/240 (18%)
Query: 30 GPRERHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPHPAA 89
G +R GP +P + P GP P A L P G+ GS A P PA
Sbjct: 100 GGPQRPGPPSP--RRPLVPAGPAP-PAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAG 156
Query: 90 RCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGR----SSALALAG---------GA 136
P +P P R G P P P P P PG+ +A L G A
Sbjct: 157 ---PAKPAGPAALAARAG--PGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAA 211
Query: 137 APGVARAQ----------RPGGSG---------GRSHPGGPGSPRGGGTVGPGDRGPAAA 177
AP V+ +P G G + P P +P P PAAA
Sbjct: 212 APAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAP--SPPAAPAPAAPAAA 269
Query: 178 DGGRPQRTVRAAETRGAAAAPPL---TLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRP 234
P A G A PP + P + +G A +P G G +P
Sbjct: 270 PPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQP 329
Score = 37.4 bits (85), Expect = 0.013
Identities = 46/163 (28%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 94 LRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRS 153
L P P R G S PA G ++ A GAAP A GR+
Sbjct: 43 LAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPA-------GRA 95
Query: 154 HPGGPGSPRGGGTVGPGDRGPAAADG-GRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGT 212
PGG G R G P R P G P +R A + P+ V + G
Sbjct: 96 RPGGGGPQRPG---PPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAA--GP 150
Query: 213 PALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPDTLASAG 255
GP P A L A P G P P P A G
Sbjct: 151 EPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPG 193
Score = 33.5 bits (75), Expect = 0.19
Identities = 70/258 (27%), Positives = 87/258 (33%), Gaps = 66/258 (25%)
Query: 4 GMGSAQACPC---------QVPRAASTTWVPCQICGPRERHGPRTPGGQLPGARRGPG-- 52
G G+A A P +V +AA GP G + GA P
Sbjct: 330 GPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAV 389
Query: 53 -PRRPAPLPARPPGALGSVLRPLRARP-----GCRPR-RPHPAARCLPLRPHRPT--RRH 103
P P P GA G+V + L P G R P A LP P PT +
Sbjct: 390 PPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLAPRLPQPPQNPTNIQNF 449
Query: 104 RRPGGFPL----------------------AWGSPQP--APRPA-PGRSSALALAGGAAP 138
+ P G L A PQ APRPA P + + ++ AP
Sbjct: 450 QLPPGMVLVRSENGQLLMIPQQALAQMQAQAHAQPQTTMAPRPATPTSAPPVQISTVQAP 509
Query: 139 G----------------VARAQ---RPGGSGGRSHPGGPGSPRGGGTVGPGDRGPAAA-D 178
G V++AQ +P + RS PG GG G A A
Sbjct: 510 GTPIIARQVTPTTIIKQVSQAQTTVQPSATLQRS-PGVQPQLVLGGAAQTASLGTATAVQ 568
Query: 179 GGRPQRTVRAAETRGAAA 196
G PQRTV A T +AA
Sbjct: 569 TGTPQRTVPGATTTSSAA 586
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.139 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,576,790
Number of Sequences: 37866
Number of extensions: 1466213
Number of successful extensions: 23351
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 2054
Number of HSP's that attempted gapping in prelim test: 10115
Number of HSP's gapped (non-prelim): 8229
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.