Guide to the Human Genome
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Name: ZC3H13 Sequence: fasta or formatted (1564aa) NCBI GI: 116008442
Description:

zinc finger CCCH-type containing 13

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.2         50           4
 C cysteine            0.4          7           1
 D aspartate           9.6        150           2
 E glutamate          13.0        204           3
 F phenylalanine       0.9         14           1
 G glycine             4.2         66           1
 H histidine           2.8         44           2
 I isoleucine          2.7         42           3
 K lysine              7.9        123           4
 L leucine             4.0         63           2
 M methionine          1.0         16           1
 N asparagine          2.6         40           2
 P proline             5.4         85           5
 Q glutamine           3.3         52           2
 R arginine           17.4        272           3
 S serine             12.0        187           4
 T threonine           5.0         78           2
 V valine              2.6         40           2
 W tryptophan          0.6          9           1
 Y tyrosine            1.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger CCCH-type containing 13 
LOC100286959          0.071   PREDICTED: hypothetical protein XP_002343921 
TCHH                  0.055   trichohyalin 
LOC100288837          0.055   PREDICTED: hypothetical protein XP_002343931, parti...
RBM25                 0.053   RNA binding motif protein 25 
LOC100131202          0.051   PREDICTED: hypothetical protein 
LOC100131202          0.051   PREDICTED: hypothetical protein 
LOC100134067          0.045   PREDICTED: hypothetical protein 
SFRS12                0.043   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.043   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100170229          0.042   hypothetical protein LOC100170229 
PRPF38B               0.040   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
EIF3A                 0.040   eukaryotic translation initiation factor 3, subunit 1...
SRRM2                 0.040   splicing coactivator subunit SRm300 
PPIG                  0.039   peptidylprolyl isomerase G 
LOC100133599          0.038   PREDICTED: hypothetical protein 
LOC283685             0.037   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133599          0.036   PREDICTED: hypothetical protein 
LOC283685             0.034   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CALD1                 0.032   caldesmon 1 isoform 1 
CDC2L1                0.032   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.031   cell division cycle 2-like 1 (PITSLRE proteins) isof...
BAT2D1                0.031   HBxAg transactivated protein 2 
CDC2L1                0.031   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.031   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LOC283767             0.031   golgi autoantigen, golgin subfamily a-like 
LOC727832             0.031   golgi autoantigen, golgin subfamily a-like 
CDC2L2                0.030   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.030   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CROP                  0.030   cisplatin resistance-associated overexpressed protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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