Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RBMXL3 Sequence: fasta or formatted (1067aa) NCBI GI: 223890219
Description:

RNA binding motif protein, X-linked-like 3

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         58           3
 C cysteine            1.4         15           2
 D aspartate           6.7         71           2
 E glutamate           4.8         51           2
 F phenylalanine       1.1         12           1
 G glycine            18.4        196           4
 H histidine           4.7         50           2
 I isoleucine          0.7          7           2
 K lysine              2.2         23           1
 L leucine             3.1         33           2
 M methionine          0.8          9           2
 N asparagine          3.5         37           2
 P proline             6.2         66           3
 Q glutamine           1.7         18           1
 R arginine           11.6        124           2
 S serine             15.8        169           4
 T threonine           1.5         16           1
 V valine              1.6         17           2
 W tryptophan          0.8          9           1
 Y tyrosine            8.1         86           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein, X-linked-like 3 
RBMXL2                0.162   testes-specific heterogenous nuclear ribonucleoprot...
RBMX                  0.124   RNA binding motif protein, X-linked 
RBMXL1                0.120   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.120   RNA binding motif protein, X-linked-like 1 
RBMY1D                0.069   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1A1               0.069   RNA binding motif protein, Y-linked, family 1, member...
RBMY1E                0.069   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1B                0.069   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1F                0.068   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1J                0.068   RNA binding motif protein, Y-linked, family 1, membe...
HRNR                  0.066   hornerin 
LOC100288788          0.054   PREDICTED: similar to RNA binding motif protein, X-...
LOC100288788          0.054   PREDICTED: hypothetical protein XP_002343863 
FLG                   0.053   filaggrin 
FLG2                  0.040   filaggrin family member 2 
LOC100291994          0.032   PREDICTED: hypothetical protein XP_002346350 
TAF15                 0.030   TBP-associated factor 15 isoform 1 
RBM3                  0.029   RNA binding motif protein 3 
TAF15                 0.029   TBP-associated factor 15 isoform 2 
CIRBP                 0.028   cold inducible RNA binding protein 
DSPP                  0.028   dentin sialophosphoprotein preproprotein 
FUS                   0.022   fusion (involved in t(12;16) in malignant liposarcoma...
KRT9                  0.022   keratin 9 
HNRNPA1               0.021   heterogeneous nuclear ribonucleoprotein A1 isoform b...
RPTN                  0.021   repetin 
LOR                   0.021   loricrin 
TRA2A                 0.020   transformer-2 alpha 
ILF3                  0.020   interleukin enhancer binding factor 3 isoform d [Ho...
ILF3                  0.020   interleukin enhancer binding factor 3 isoform a [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press