Guide to the Human Genome
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Name: TCHHL1 Sequence: fasta or formatted (904aa) NCBI GI: 56606114
Description:

trichohyalin-like 1

Referenced in:

Calmodulin and Calcium
Skin and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         56           3
 C cysteine            1.0          9           1
 D aspartate           6.2         56           2
 E glutamate          12.9        117           3
 F phenylalanine       1.7         15           2
 G glycine             7.7         70           2
 H histidine           2.0         18           1
 I isoleucine          2.0         18           2
 K lysine              6.3         57           2
 L leucine             7.0         63           2
 M methionine          0.9          8           1
 N asparagine          4.1         37           3
 P proline             6.3         57           2
 Q glutamine           9.2         83           2
 R arginine            4.4         40           2
 S serine              9.3         84           3
 T threonine           6.9         62           2
 V valine              4.3         39           2
 W tryptophan          0.3          3           1
 Y tyrosine            1.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   trichohyalin-like 1 
RPGR                  0.043   retinitis pigmentosa GTPase regulator isoform C [Hom...
TCHH                  0.040   trichohyalin 
FLG                   0.037   filaggrin 
RPTN                  0.034   repetin 
RP1L1                 0.034   retinitis pigmentosa 1-like 1 
CRNN                  0.032   cornulin 
DSPP                  0.027   dentin sialophosphoprotein preproprotein 
NEFH                  0.025   neurofilament, heavy polypeptide 200kDa 
AKAP12                0.024   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.024   A kinase (PRKA) anchor protein 12 isoform 2 
NEFM                  0.024   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.024   neurofilament, medium polypeptide 150kDa isoform 2 ...
LOC100133758          0.023   PREDICTED: hypothetical protein, partial 
MAP1B                 0.022   microtubule-associated protein 1B 
DPCR1                 0.021   diffuse panbronchiolitis critical region 1 protein ...
ATRX                  0.021   transcriptional regulator ATRX isoform 2 
ATRX                  0.021   transcriptional regulator ATRX isoform 1 
LOC100294236          0.021   PREDICTED: similar to diffuse panbronchiolitis crit...
HRNR                  0.019   hornerin 
SLTM                  0.019   modulator of estrogen induced transcription isoform ...
LOC100170229          0.019   hypothetical protein LOC100170229 
ARID4A                0.019   retinoblastoma-binding protein 1 isoform II 
LOC283685             0.018   PREDICTED: golgi autoantigen, golgin subfamily a-li...
PCLO                  0.018   piccolo isoform 2 
PCLO                  0.018   piccolo isoform 1 
ARID4A                0.018   retinoblastoma-binding protein 1 isoform III 
ARID4A                0.018   retinoblastoma-binding protein 1 isoform I 
HIRIP3                0.018   HIRA interacting protein 3 
DMP1                  0.017   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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