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Search of human proteins with 170014689
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo
sapiens]
(1159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 2348 0.0
gi|61743975 SORCS receptor 1 isoform b [Homo sapiens] 1011 0.0
gi|61743973 SORCS receptor 1 isoform a [Homo sapiens] 970 0.0
gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens] 961 0.0
gi|4507157 sortilin-related receptor containing LDLR class A rep... 260 5e-69
gi|17149834 sortilin 1 preproprotein [Homo sapiens] 237 5e-62
gi|110832843 TBP-associated factor 4 [Homo sapiens] 56 2e-07
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 55 5e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 54 9e-07
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 52 3e-06
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 52 3e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 51 7e-06
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 50 1e-05
gi|169205117 PREDICTED: hypothetical protein [Homo sapiens] 50 2e-05
gi|169204510 PREDICTED: hypothetical protein [Homo sapiens] 49 2e-05
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ... 49 2e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 49 4e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 49 4e-05
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 49 4e-05
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 48 6e-05
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 48 6e-05
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 48 6e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 48 6e-05
gi|148762978 similar to CG15216-PA [Homo sapiens] 47 8e-05
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 47 1e-04
gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ... 47 1e-04
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 47 1e-04
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 47 1e-04
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 47 1e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 46 2e-04
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 2348 bits (6085), Expect = 0.0
Identities = 1159/1159 (100%), Positives = 1159/1159 (100%)
Query: 1 MAHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP 60
MAHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP
Sbjct: 1 MAHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP 60
Query: 61 HAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERA 120
HAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERA
Sbjct: 61 HAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERA 120
Query: 121 APLAGVASRAQVSLISTSFVLKGDATHNQAMVHWTGENSSVILILTKYYHADMGKVLESS 180
APLAGVASRAQVSLISTSFVLKGDATHNQAMVHWTGENSSVILILTKYYHADMGKVLESS
Sbjct: 121 APLAGVASRAQVSLISTSFVLKGDATHNQAMVHWTGENSSVILILTKYYHADMGKVLESS 180
Query: 181 LWRSSDFGTSYTKLTLQPGVTTVIDNFYICPTNKRKVILVSSSLSDRDQSLFLSADEGAT 240
LWRSSDFGTSYTKLTLQPGVTTVIDNFYICPTNKRKVILVSSSLSDRDQSLFLSADEGAT
Sbjct: 181 LWRSSDFGTSYTKLTLQPGVTTVIDNFYICPTNKRKVILVSSSLSDRDQSLFLSADEGAT 240
Query: 241 FQKQPIPFFVETLIFHPKEEDKVLAYTKESKLYVSSDLGKKWTLLQERVTKDHVFWSVSG 300
FQKQPIPFFVETLIFHPKEEDKVLAYTKESKLYVSSDLGKKWTLLQERVTKDHVFWSVSG
Sbjct: 241 FQKQPIPFFVETLIFHPKEEDKVLAYTKESKLYVSSDLGKKWTLLQERVTKDHVFWSVSG 300
Query: 301 VDADPDLVHVEAQDLGGDFRYVTCAIHNCSEKMLTAPFAGPIDHGSLTVQDDYIFFKATS 360
VDADPDLVHVEAQDLGGDFRYVTCAIHNCSEKMLTAPFAGPIDHGSLTVQDDYIFFKATS
Sbjct: 301 VDADPDLVHVEAQDLGGDFRYVTCAIHNCSEKMLTAPFAGPIDHGSLTVQDDYIFFKATS 360
Query: 361 ANQTKYYVSYRRNEFVLMKLPKYALPKDLQIISTDESQVFVAVQEWYQMDTYNLYQSDPR 420
ANQTKYYVSYRRNEFVLMKLPKYALPKDLQIISTDESQVFVAVQEWYQMDTYNLYQSDPR
Sbjct: 361 ANQTKYYVSYRRNEFVLMKLPKYALPKDLQIISTDESQVFVAVQEWYQMDTYNLYQSDPR 420
Query: 421 GVRYALVLQDVRSSRQAEESVLIDILEVRGVKGVFLANQKIDGKVMTLITYNKGRDWDYL 480
GVRYALVLQDVRSSRQAEESVLIDILEVRGVKGVFLANQKIDGKVMTLITYNKGRDWDYL
Sbjct: 421 GVRYALVLQDVRSSRQAEESVLIDILEVRGVKGVFLANQKIDGKVMTLITYNKGRDWDYL 480
Query: 481 RPPSMDMNGKPTNCKPPDCHLHLHLRWADNPYVSGTVHTKDTAPGLIMGAGNLGSQLVEY 540
RPPSMDMNGKPTNCKPPDCHLHLHLRWADNPYVSGTVHTKDTAPGLIMGAGNLGSQLVEY
Sbjct: 481 RPPSMDMNGKPTNCKPPDCHLHLHLRWADNPYVSGTVHTKDTAPGLIMGAGNLGSQLVEY 540
Query: 541 KEEMYITSDCGHTWRQVFEEEHHILYLDHGGVIVAIKDTSIPLKILKFSVDEGLTWSTHN 600
KEEMYITSDCGHTWRQVFEEEHHILYLDHGGVIVAIKDTSIPLKILKFSVDEGLTWSTHN
Sbjct: 541 KEEMYITSDCGHTWRQVFEEEHHILYLDHGGVIVAIKDTSIPLKILKFSVDEGLTWSTHN 600
Query: 601 FTSTSVFVDGLLSEPGDETLVMTVFGHISFRSDWELVKVDFRPSFSRQCGEEDYSSWELS 660
FTSTSVFVDGLLSEPGDETLVMTVFGHISFRSDWELVKVDFRPSFSRQCGEEDYSSWELS
Sbjct: 601 FTSTSVFVDGLLSEPGDETLVMTVFGHISFRSDWELVKVDFRPSFSRQCGEEDYSSWELS 660
Query: 661 NLQGDRCIMGQQRSFRKRKSTSWCIKGRSFTSALTSRVCECRDSDFLCDYGFERSSSSES 720
NLQGDRCIMGQQRSFRKRKSTSWCIKGRSFTSALTSRVCECRDSDFLCDYGFERSSSSES
Sbjct: 661 NLQGDRCIMGQQRSFRKRKSTSWCIKGRSFTSALTSRVCECRDSDFLCDYGFERSSSSES 720
Query: 721 STNKCSANFWFNPLSPPDDCALGQTYTSSLGYRKVVSNVCEGGVDMQQSQVQLQCPLTPP 780
STNKCSANFWFNPLSPPDDCALGQTYTSSLGYRKVVSNVCEGGVDMQQSQVQLQCPLTPP
Sbjct: 721 STNKCSANFWFNPLSPPDDCALGQTYTSSLGYRKVVSNVCEGGVDMQQSQVQLQCPLTPP 780
Query: 781 RGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGEPIRH 840
RGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGEPIRH
Sbjct: 781 RGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGEPIRH 840
Query: 841 RYESPGIYRVSVRAENTAGHDEAVLFVQVNSPLQALYLEVVPVIGLNQEVNLTAVLLPLN 900
RYESPGIYRVSVRAENTAGHDEAVLFVQVNSPLQALYLEVVPVIGLNQEVNLTAVLLPLN
Sbjct: 841 RYESPGIYRVSVRAENTAGHDEAVLFVQVNSPLQALYLEVVPVIGLNQEVNLTAVLLPLN 900
Query: 901 PNLTVFYWWIGHSLQPLLSLDNSVTTRFSDTGDVRVTVQAACGNSVLQDSRVLRVLDQFQ 960
PNLTVFYWWIGHSLQPLLSLDNSVTTRFSDTGDVRVTVQAACGNSVLQDSRVLRVLDQFQ
Sbjct: 901 PNLTVFYWWIGHSLQPLLSLDNSVTTRFSDTGDVRVTVQAACGNSVLQDSRVLRVLDQFQ 960
Query: 961 VMPLQFSKELDAYNPNTPEWREDVGLVVTRLLSKETSVPQELLVTVVKPGLPTLADLYVL 1020
VMPLQFSKELDAYNPNTPEWREDVGLVVTRLLSKETSVPQELLVTVVKPGLPTLADLYVL
Sbjct: 961 VMPLQFSKELDAYNPNTPEWREDVGLVVTRLLSKETSVPQELLVTVVKPGLPTLADLYVL 1020
Query: 1021 LPPPRPTRKRSLSSDKRLAAIQQVLNAQKISFLLRGGVRVLVALRDTGTGAEQLGGGGGY 1080
LPPPRPTRKRSLSSDKRLAAIQQVLNAQKISFLLRGGVRVLVALRDTGTGAEQLGGGGGY
Sbjct: 1021 LPPPRPTRKRSLSSDKRLAAIQQVLNAQKISFLLRGGVRVLVALRDTGTGAEQLGGGGGY 1080
Query: 1081 WAVVVLFVIGLFAAGAFILYKFKRKRPGRTVYAQMHNEKEQEMTSPVSHSEDVQGAVQGN 1140
WAVVVLFVIGLFAAGAFILYKFKRKRPGRTVYAQMHNEKEQEMTSPVSHSEDVQGAVQGN
Sbjct: 1081 WAVVVLFVIGLFAAGAFILYKFKRKRPGRTVYAQMHNEKEQEMTSPVSHSEDVQGAVQGN 1140
Query: 1141 HSGVVLSINSREMHSYLVS 1159
HSGVVLSINSREMHSYLVS
Sbjct: 1141 HSGVVLSINSREMHSYLVS 1159
>gi|61743975 SORCS receptor 1 isoform b [Homo sapiens]
Length = 1198
Score = 1011 bits (2613), Expect = 0.0
Identities = 526/1138 (46%), Positives = 731/1138 (64%), Gaps = 37/1138 (3%)
Query: 12 GPGPTARAPSPGAPP--------------PPRSPRSR-PLLLLLLLLGACGAAGRSPEPG 56
G G +P P + P P R+P + PL++ L A G S E
Sbjct: 33 GGGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPGDRALSLERA 92
Query: 57 RLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRR 116
R G A + RS GR G + +A E G S P + G G R
Sbjct: 93 R-GTGASMAVAARS---GRRRRSGADQEKAERGE----GASRSPRGVLRDGGQQEPGTR- 143
Query: 117 WERAAPLAGVASRAQVSLISTSFVLKGDATHNQAMVHWTGENSSVILILTKYYHADMGKV 176
ER A ++ L ST+F L GD+ HNQAMVHW+G NSSVILILTK Y ++G +
Sbjct: 144 -ERDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLYDYNLGSI 202
Query: 177 LESSLWRSSDFGTSYTKLTLQPGVTTVIDNFYICPTNKRKVILVSSSLSDRDQSLFLSAD 236
ESSLWRS+D+GT+Y KL + G+ T++ Y+CPTNKRK++L++ + + SL +S+D
Sbjct: 203 TESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDP--EIESSLLISSD 260
Query: 237 EGATFQKQPIPFFVETLIFHPKEEDKVLAYTKESKLYVSSDLGKKWTLLQERVTKDHVFW 296
EGAT+QK + F++++L+FHPK+ED +LAY+++ KLY S++ G++W L+QE V + +W
Sbjct: 261 EGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYW 320
Query: 297 SVSGVDADPDLVHVEAQDLGGDFRYVTCAIHNCSEKMLTAPFAGPIDHGSLTVQDDYIFF 356
SV G + +PDLVH+EA+ + G Y+TC + NC+E PF G ID SL VQD Y+F
Sbjct: 321 SVMGSNKEPDLVHLEARTVDGHSHYLTCRMQNCTEANRNQPFPGYIDPDSLIVQDHYVFV 380
Query: 357 KATSANQTKYYVSYRRNEFVLMKLPKYALPKDLQIISTDESQVFVAVQEWYQMDTYNLYQ 416
+ TS + YYVSYRRN F MKLPKYALPKD+ +ISTDE+QVF AVQEW Q DTYNLY
Sbjct: 381 QLTSGGRPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYI 440
Query: 417 SDPRGVRYALVLQDVRSSRQAEESVLIDILEVRGVKGVFLANQKIDGKVMTLITYNKGRD 476
SD RGV + L L++V+SSR E +++ID+ EV G+KG+FLAN+KID +V T ITYNKGRD
Sbjct: 441 SDTRGVYFTLALENVQSSRGPEGNIMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRD 500
Query: 477 WDYLRPPSMDMNGKPTNCKPPDCHLHLHLRWADNPYVSGTVHTKDTAPGLIMGAGNLGSQ 536
W L+ P D+ G P +C P C LHLHL+ ++NPY SG + +KDTAP +I+ +GN+GS+
Sbjct: 501 WRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASKDTAPSIIVASGNIGSE 560
Query: 537 LVEYKEEMYITSDCGHTWRQVFEEEHHILYLDHGGVIVAIKDTSIPLKILKFSVDEGLTW 596
L + M+++SD G+TWRQ+FEEEH +LYLD GGV+VA+K TS+P++ L S DEG +W
Sbjct: 561 LSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSW 620
Query: 597 STHNFTSTSVFVDGLLSEPGDETLVMTVFGHISFRSDWELVKVDFRPSFSRQCGEEDYSS 656
S ++FTS +FVDG+L EPG+ETL+MTVFGH S RS+W+LVKVD++ F R+C EEDY
Sbjct: 621 SKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRP 680
Query: 657 WELSNLQGDRCIMGQQRSFRKRKSTSWCIKGRSFTSALTSRVCECRDSDFLCDYGFERSS 716
W+L + QG+ CIMG +R ++KRKS C++G+ + A+ S C C ++DF CDYG+ER S
Sbjct: 681 WQLHS-QGEACIMGAKRIYKKRKSERKCMQGK-YAGAMESEPCVCTEADFDCDYGYERHS 738
Query: 717 SSESSTNKCSANFWFNPLSPPDDCALGQTYTSSLGYRKVVSNVCEGGVDMQQSQVQLQCP 776
+ + C FWFNP S DC+LGQ+Y +S GYRKVVSN C GV Q + +CP
Sbjct: 739 NGQ-----CLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCP 793
Query: 777 LTPPRGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGE 836
PRGL++ + G +V +V+ E+GDV T QVD GDG YVNL+ +
Sbjct: 794 GKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDGIAVSYVNLSSMED 853
Query: 837 PIRHRYESPGIYRVSVRAENTAGHDEAVLFVQVNSPLQALYLEVVPVIGLNQEVNLTAVL 896
I+H Y++ GI+RV+V+ +N+ G D AVL++ V PL+ ++L + V N+EVN TAVL
Sbjct: 854 GIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVL 913
Query: 897 LPLNPNLTVFYWWIGHSLQPLLSLDNSVTTRFSDTGDVRVTVQAACGNSVLQDSRVLRVL 956
P + WW G++ +PL++L+ S++ RF+ G +TVQ + GN++LQD++ + V
Sbjct: 914 WPSQVGTLTYVWWYGNNTEPLITLEGSISFRFTSEGMNTITVQVSAGNAILQDTKTIAVY 973
Query: 957 DQFQVMPLQFSKELDAYNPNTPEWREDVGLVVTRLLSKETSVPQELLVTVVKPGLPTLAD 1016
++F+ + L FS LD YNP+ PEWR D+G V+ + L + T VP + ++ V PGLPT A+
Sbjct: 974 EEFRSLRLSFSPNLDDYNPDIPEWRRDIGRVIKKSLVEATGVPGQHILVAVLPGLPTTAE 1033
Query: 1017 LYVL-LPPPRPTRKRSLSSDKRLAAIQ-QVLNAQKISFLLRGGVRVLV-ALRDTGTGAEQ 1073
L+VL P KRS ++++ + LN + F L+ GVRVLV A T
Sbjct: 1034 LFVLPYQDPAGENKRSTDDLEQISELLIHTLNQNSVHFELKPGVRVLVHAAHLTAAPLVD 1093
Query: 1074 LGGGGGYWAVVVLFVIGLFAAGAFILYKFKRKRPGRTVYAQMHNEKEQEMTSPVSHSE 1131
L A+++L + F++YKFKRK PG VYAQM NEKEQEM SPVSHSE
Sbjct: 1094 LTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRKIPGINVYAQMQNEKEQEMISPVSHSE 1151
>gi|61743973 SORCS receptor 1 isoform a [Homo sapiens]
Length = 1168
Score = 970 bits (2507), Expect = 0.0
Identities = 504/1112 (45%), Positives = 710/1112 (63%), Gaps = 37/1112 (3%)
Query: 12 GPGPTARAPSPGAPP--------------PPRSPRSR-PLLLLLLLLGACGAAGRSPEPG 56
G G +P P + P P R+P + PL++ L A G S E
Sbjct: 33 GGGSCCPSPHPSSAPRSASTPRGFSHQGRPGRAPATPLPLVVRPLFSVAPGDRALSLERA 92
Query: 57 RLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRR 116
R G A + RS GR G + +A E G S P + G G R
Sbjct: 93 R-GTGASMAVAARS---GRRRRSGADQEKAERGE----GASRSPRGVLRDGGQQEPGTR- 143
Query: 117 WERAAPLAGVASRAQVSLISTSFVLKGDATHNQAMVHWTGENSSVILILTKYYHADMGKV 176
ER A ++ L ST+F L GD+ HNQAMVHW+G NSSVILILTK Y ++G +
Sbjct: 144 -ERDPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLYDYNLGSI 202
Query: 177 LESSLWRSSDFGTSYTKLTLQPGVTTVIDNFYICPTNKRKVILVSSSLSDRDQSLFLSAD 236
ESSLWRS+D+GT+Y KL + G+ T++ Y+CPTNKRK++L++ + + SL +S+D
Sbjct: 203 TESSLWRSTDYGTTYEKLNDKVGLKTILSYLYVCPTNKRKIMLLTDP--EIESSLLISSD 260
Query: 237 EGATFQKQPIPFFVETLIFHPKEEDKVLAYTKESKLYVSSDLGKKWTLLQERVTKDHVFW 296
EGAT+QK + F++++L+FHPK+ED +LAY+++ KLY S++ G++W L+QE V + +W
Sbjct: 261 EGATYQKYRLNFYIQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNRFYW 320
Query: 297 SVSGVDADPDLVHVEAQDLGGDFRYVTCAIHNCSEKMLTAPFAGPIDHGSLTVQDDYIFF 356
SV G + +PDLVH+EA+ + G Y+TC + NC+E PF G ID SL VQD Y+F
Sbjct: 321 SVMGSNKEPDLVHLEARTVDGHSHYLTCRMQNCTEANRNQPFPGYIDPDSLIVQDHYVFV 380
Query: 357 KATSANQTKYYVSYRRNEFVLMKLPKYALPKDLQIISTDESQVFVAVQEWYQMDTYNLYQ 416
+ TS + YYVSYRRN F MKLPKYALPKD+ +ISTDE+QVF AVQEW Q DTYNLY
Sbjct: 381 QLTSGGRPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDENQVFAAVQEWNQNDTYNLYI 440
Query: 417 SDPRGVRYALVLQDVRSSRQAEESVLIDILEVRGVKGVFLANQKIDGKVMTLITYNKGRD 476
SD RGV + L L++V+SSR E +++ID+ EV G+KG+FLAN+KID +V T ITYNKGRD
Sbjct: 441 SDTRGVYFTLALENVQSSRGPEGNIMIDLYEVAGIKGMFLANKKIDNQVKTFITYNKGRD 500
Query: 477 WDYLRPPSMDMNGKPTNCKPPDCHLHLHLRWADNPYVSGTVHTKDTAPGLIMGAGNLGSQ 536
W L+ P D+ G P +C P C LHLHL+ ++NPY SG + +KDTAP +I+ +GN+GS+
Sbjct: 501 WRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIASKDTAPSIIVASGNIGSE 560
Query: 537 LVEYKEEMYITSDCGHTWRQVFEEEHHILYLDHGGVIVAIKDTSIPLKILKFSVDEGLTW 596
L + M+++SD G+TWRQ+FEEEH +LYLD GGV+VA+K TS+P++ L S DEG +W
Sbjct: 561 LSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHTSLPIRHLWLSFDEGRSW 620
Query: 597 STHNFTSTSVFVDGLLSEPGDETLVMTVFGHISFRSDWELVKVDFRPSFSRQCGEEDYSS 656
S ++FTS +FVDG+L EPG+ETL+MTVFGH S RS+W+LVKVD++ F R+C EEDY
Sbjct: 621 SKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSHRSEWQLVKVDYKSIFDRRCAEEDYRP 680
Query: 657 WELSNLQGDRCIMGQQRSFRKRKSTSWCIKGRSFTSALTSRVCECRDSDFLCDYGFERSS 716
W+L + QG+ CIMG +R ++KRKS C++G+ + A+ S C C ++DF CDYG+ER S
Sbjct: 681 WQLHS-QGEACIMGAKRIYKKRKSERKCMQGK-YAGAMESEPCVCTEADFDCDYGYERHS 738
Query: 717 SSESSTNKCSANFWFNPLSPPDDCALGQTYTSSLGYRKVVSNVCEGGVDMQQSQVQLQCP 776
+ + C FWFNP S DC+LGQ+Y +S GYRKVVSN C GV Q + +CP
Sbjct: 739 NGQ-----CLPAFWFNPSSLSKDCSLGQSYLNSTGYRKVVSNNCTDGVREQYTAKPQKCP 793
Query: 777 LTPPRGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGE 836
PRGL++ + G +V +V+ E+GDV T QVD GDG YVNL+ +
Sbjct: 794 GKAPRGLRIVTADGKLTAEQGHNVTLMVQLEEGDVQRTLIQVDFGDGIAVSYVNLSSMED 853
Query: 837 PIRHRYESPGIYRVSVRAENTAGHDEAVLFVQVNSPLQALYLEVVPVIGLNQEVNLTAVL 896
I+H Y++ GI+RV+V+ +N+ G D AVL++ V PL+ ++L + V N+EVN TAVL
Sbjct: 854 GIKHVYQNVGIFRVTVQVDNSLGSDSAVLYLHVTCPLEHVHLSLPFVTTKNKEVNATAVL 913
Query: 897 LPLNPNLTVFYWWIGHSLQPLLSLDNSVTTRFSDTGDVRVTVQAACGNSVLQDSRVLRVL 956
P + WW G++ +PL++L+ S++ RF+ G +TVQ + GN++LQD++ + V
Sbjct: 914 WPSQVGTLTYVWWYGNNTEPLITLEGSISFRFTSEGMNTITVQVSAGNAILQDTKTIAVY 973
Query: 957 DQFQVMPLQFSKELDAYNPNTPEWREDVGLVVTRLLSKETSVPQELLVTVVKPGLPTLAD 1016
++F+ + L FS LD YNP+ PEWR D+G V+ + L + T VP + ++ V PGLPT A+
Sbjct: 974 EEFRSLRLSFSPNLDDYNPDIPEWRRDIGRVIKKSLVEATGVPGQHILVAVLPGLPTTAE 1033
Query: 1017 LYVL-LPPPRPTRKRSLSSDKRLAAIQ-QVLNAQKISFLLRGGVRVLV-ALRDTGTGAEQ 1073
L+VL P KRS ++++ + LN + F L+ GVRVLV A T
Sbjct: 1034 LFVLPYQDPAGENKRSTDDLEQISELLIHTLNQNSVHFELKPGVRVLVHAAHLTAAPLVD 1093
Query: 1074 LGGGGGYWAVVVLFVIGLFAAGAFILYKFKRK 1105
L A+++L + F++YKFKR+
Sbjct: 1094 LTPTHSGSAMLMLLSVVFVGLAVFVIYKFKRR 1125
>gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]
Length = 1222
Score = 961 bits (2485), Expect = 0.0
Identities = 504/1150 (43%), Positives = 720/1150 (62%), Gaps = 38/1150 (3%)
Query: 9 ASKGPGPTARAPSPGAPPP---PRSPRSRPLLLLLLLLGACGAA--GRSPEP-------G 56
A+ GPG R +P + PP P SPR+ L A AA GR P G
Sbjct: 39 ATGGPG---RPAAPASRPPALSPLSPRAVASQWPEELASARRAAVLGRRAGPELLPQQGG 95
Query: 57 RLGPHAQLTRVPRSPPAGRAEPG-------GGEDRQARGTEPGAP--GPSPGPAPGPGED 107
G Q+ SP R G GG R R P G + AP G
Sbjct: 96 GRGGEMQVEAGGTSPAGERRGRGIPAPAKLGGARRSRRAQPPITQERGDAWATAPADGSR 155
Query: 108 GA-PAAGYRRWERAAPLAGVASRAQVSLISTSFVLKGDATHNQAMVHWTGENSSVILILT 166
G+ P A R E AP AG ++ + L STSF L GD+ HNQAMVHW+G NSSVILILT
Sbjct: 156 GSRPLAKGSREEVKAPRAGGSAAEDLRLPSTSFALTGDSAHNQAMVHWSGHNSSVILILT 215
Query: 167 KYYHADMGKVLESSLWRSSDFGTSYTKLTLQPGVTTVIDNFYICPTNKRKVILVSSSLSD 226
K Y ++G V ESSLWRS+D+GT+Y KL + G+ TV+ Y+ PTNKRK++L+S +
Sbjct: 216 KLYDFNLGSVTESSLWRSTDYGTTYEKLNDKVGLKTVLSYLYVNPTNKRKIMLLSDP--E 273
Query: 227 RDQSLFLSADEGATFQKQPIPFFVETLIFHPKEEDKVLAYTKESKLYVSSDLGKKWTLLQ 286
+ S+ +S+DEGAT+QK + F++++L+FHPK+ED VLAY+ + KLY S D G++W L+
Sbjct: 274 MESSILISSDEGATYQKYRLTFYIQSLLFHPKQEDWVLAYSLDQKLYSSMDFGRRWQLMH 333
Query: 287 ERVTKDHVFWSVSGVDADPDLVHVEAQDLGGDFRYVTCAIHNCSEKMLTAPFAGPIDHGS 346
ER+T + +WSV+G+D + DLVH+E + G Y+TC I C+E + PFA ID S
Sbjct: 334 ERITPNRFYWSVAGLDKEADLVHMEVRTTDGYAHYLTCRIQECAETTRSGPFARSIDISS 393
Query: 347 LTVQDDYIFFKATSANQTKYYVSYRRNEFVLMKLPKYALPKDLQIISTDESQVFVAVQEW 406
L VQD+YIF + T++ + YYVSYRR F +KLPKY+LPKD+ IISTDE+QVF AVQEW
Sbjct: 394 LVVQDEYIFIQVTTSGRASYYVSYRREAFAQIKLPKYSLPKDMHIISTDENQVFAAVQEW 453
Query: 407 YQMDTYNLYQSDPRGVRYALVLQDVRSSRQAEESVLIDILEVRGVKGVFLANQKIDGKVM 466
Q DTYNLY SD RG+ + L +++++SSR +++I++ EV G+KG+FLAN+K+D +V
Sbjct: 454 NQNDTYNLYISDTRGIYFTLAMENIKSSRGLMGNIIIELYEVAGIKGIFLANKKVDDQVK 513
Query: 467 TLITYNKGRDWDYLRPPSMDMNGKPTNCKPPDCHLHLHLRWADNPYVSGTVHTKDTAPGL 526
T ITYNKGRDW L+ P +D+ G P +C P C LHLHL+ ++NPY SG + +K+TAPGL
Sbjct: 514 TYITYNKGRDWRLLQAPDVDLRGSPVHCLLPFCSLHLHLQLSENPYSSGRISSKETAPGL 573
Query: 527 IMGAGNLGSQLVEYKEEMYITSDCGHTWRQVFEEEHHILYLDHGGVIVAIKDTSIPLKIL 586
++ GN+G +L ++I+SD G+TWRQ+F+EE+++ +LD GG +VA+K T +P++ L
Sbjct: 574 VVATGNIGPELSYTDIGVFISSDGGNTWRQIFDEEYNVWFLDWGGALVAMKHTPLPVRHL 633
Query: 587 KFSVDEGLTWSTHNFTSTSVFVDGLLSEPGDETLVMTVFGHISFRSDWELVKVDFRPSFS 646
S DEG +W + FTS +FVDG L E G ET +MTVFGH S RS+W+LVKVD++ FS
Sbjct: 634 WVSFDEGHSWDKYGFTSVPLFVDGALVEAGMETHIMTVFGHFSLRSEWQLVKVDYKSIFS 693
Query: 647 RQCGEEDYSSWELSNLQGDRCIMGQQRSFRKRKSTSWCIKGRSFTSALTSRVCECRDSDF 706
R C +EDY +W L N QG+ C+MG+++ F+KRK + C GR + ++ S C C + DF
Sbjct: 694 RHCTKEDYQTWHLLN-QGEPCVMGERKIFKKRKPGAQCALGRDHSGSVVSEPCVCANWDF 752
Query: 707 LCDYGFERSSSSESSTNKCSANFWFNPLSPPDDCALGQTYTSSLGYRKVVSNVCEGGVDM 766
CDYG+ER S+ C FW+NP SP DC+LGQ+Y +S GYR++VSN C G+
Sbjct: 753 ECDYGYERHGESQ-----CVPAFWYNPASPSKDCSLGQSYLNSTGYRRIVSNNCTDGLRE 807
Query: 767 QQSQVQLQCPLTPPRGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKA 826
+ + CP PRGL V + G + F++ E+GD+ T Q+D GDG
Sbjct: 808 KYTAKAQMCPGKAPRGLHVVTTDGRLVAEQGHNATFIILMEEGDLQRTNIQLDFGDGIAV 867
Query: 827 MYVNLTLTGEPIRHRYESPGIYRVSVRAENTAGHDEAVLFVQVNSPLQALYLEVVPVIGL 886
Y N + + I+H Y+S GI++V+ AEN G D AVLF+ V P++ ++L V V
Sbjct: 868 SYANFSPIEDGIKHVYKSAGIFQVTAYAENNLGSDTAVLFLHVVCPVEHVHLRVPFVAIR 927
Query: 887 NQEVNLTAVLLPLNPNLTVFYWWIGHSLQPLLSLDNSVTTRFSDTGDVRVTVQAACGNSV 946
N+EVN++AV+ P ++WW G+S +PL++LD+S++ F G +TVQ A GN++
Sbjct: 928 NKEVNISAVVWPSQLGTLTYFWWFGNSTKPLITLDSSISFTFLAEGTDTITVQVAAGNAL 987
Query: 947 LQDSRVLRVLDQFQVMPLQFSKELDAYNPNTPEWREDVGLVVTRLLSKETSVPQELLVTV 1006
+QD++ + V + FQ L FS LD +NP+ PEWR+D+G V+ R L K TSVP++ ++
Sbjct: 988 IQDTKEIAVHEYFQSQLLSFSPNLDYHNPDIPEWRKDIGNVIKRALVKVTSVPEDQILIA 1047
Query: 1007 VKPGLPTLADLYVLLPPPRPTRKRSLSSD--KRLAAIQQVLNAQKISFLLRGGVRVLVAL 1064
V PGLPT A+L++L P R++ D + + + LN + F L+ GV+V+V +
Sbjct: 1048 VFPGLPTSAELFILPPKNLTERRKGNEGDLEQIVETLFNALNQNLVQFELKPGVQVIVYV 1107
Query: 1065 RDTGTGAEQLGGGGGYWAVVVLFVIGLFAAG--AFILYKFKRKRPGRTVYAQMHNEKEQE 1122
T A + G+ + +L ++ + G F++YKFKRK P +YAQ+ ++KEQE
Sbjct: 1108 TQL-TLAPLVDSSAGHSSSAMLMLLSVVFVGLAVFLIYKFKRKIPWINIYAQVQHDKEQE 1166
Query: 1123 MTSPVSHSED 1132
M VS SE+
Sbjct: 1167 MIGSVSQSEN 1176
>gi|4507157 sortilin-related receptor containing LDLR class A
repeats preproprotein [Homo sapiens]
Length = 2214
Score = 260 bits (665), Expect = 5e-69
Identities = 189/673 (28%), Positives = 315/673 (46%), Gaps = 60/673 (8%)
Query: 146 THNQAMVHWTGENSSVILILTKYYHADMGKVLESSLWRSSDFGTSYTKLT------LQPG 199
+HNQ +VHW GE S+VI+ L + A + + S ++ S D+G S+ K++ L
Sbjct: 101 SHNQMVVHWAGEKSNVIVALARDSLA-LARPKSSDVYVSYDYGKSFKKISDKLNFGLGNR 159
Query: 200 VTTVIDNFYICPTNKRKVILVSSSLSDRDQSLFLSADEGATFQKQPIPFFVETLIFHPKE 259
VI FY P + ++ I + Q L+++ D T Q IPF L+ H K
Sbjct: 160 SEAVIAQFYHSPADNKRYIFADAYA----QYLWITFDFCNTLQGFSIPFRAADLLLHSKA 215
Query: 260 EDKVLAYTKE---SKLYVSSDLGKKWTLLQERVTKDHVFWSVSGVDADPDLVHVEAQDLG 316
+ +L + + +L+ S D G+ W ++QE V W + D P+ +++E +
Sbjct: 216 SNLLLGFDRSHPNKQLWKSDDFGQTWIMIQEHVKS--FSWGIDPYDK-PNTIYIERHEPS 272
Query: 317 GD---FRYVTCAIHNCSEKMLTAPFAGPIDHGSLTVQDDYIF-------FKATSANQTKY 366
G FR +++++ ++D Y+F + + +
Sbjct: 273 GYSTVFRSTDFFQSRENQEVILEEVR------DFQLRDKYMFATKVVHLLGSEQQSSVQL 326
Query: 367 YVSYRRNEFVLMKLPKYALPKDLQIISTDESQVFVAVQEWYQMDTYNLYQSDPRGVRYAL 426
+VS+ R + + I E QVFV V + + NLY S+ G++++L
Sbjct: 327 WVSFGRKPMRAAQFVTRHPINEYYIADASEDQVFVCVS--HSNNRTNLYISEAEGLKFSL 384
Query: 427 VLQDVR--SSRQAEESVLI---------DILEVRGVKGVFLANQKIDGKV-----MTLIT 470
L++V S A L+ D V G++GV++A I+G + ++IT
Sbjct: 385 SLENVLYYSPGGAGSDTLVRYFANEPFADFHRVEGLQGVYIATL-INGSMNEENMRSVIT 443
Query: 471 YNKGRDWDYLRPPSMDMNGKPTNCK-PPDCHLHLHLRWADNPYVS---GTVHTKDTAPGL 526
++KG W++L+ P+ G+ NC+ C LHL R + + + +K++APGL
Sbjct: 444 FDKGGTWEFLQAPAFTGYGEKINCELSQGCSLHLAQRLSQLLNLQLRRMPILSKESAPGL 503
Query: 527 IMGAGNLGSQLVEYKEEMYITSDCGHTWRQVFEEEHHILYLDHGGVIVAIKDTSIPLKIL 586
I+ G++G L K +YI+S G WR+ H+ + DHGG+I AI + L
Sbjct: 504 IIATGSVGKNLAS-KTNVYISSSAGARWREALPGPHYYTWGDHGGIITAIAQ-GMETNEL 561
Query: 587 KFSVDEGLTWSTHNFTSTSVFVDGLLSEPGDETLVMTVFGHISFR-SDWELVKVDFRPSF 645
K+S +EG TW T F+ VFV GLL+EPG+++ V T+FG W +++V+ +
Sbjct: 562 KYSTNEGETWKTFIFSEKPVFVYGLLTEPGEKSTVFTIFGSNKENVHSWLILQVNATDAL 621
Query: 646 SRQCGEEDYSSWELSNLQGDRCIMGQQRSFRKRKSTSWCIKGRSFTSALTSRVCECRDSD 705
C E DY W S+ +G+ C++G + F++R + C G F + C C D
Sbjct: 622 GVPCTENDYKLWSPSDERGNECLLGHKTVFKRRTPHATCFNGEDFDRPVVVSNCSCTRED 681
Query: 706 FLCDYGFERSSSSESSTNKCSANFWFNPLSPPDDCALGQTYTSSLGYRKVVSNVCEGG-V 764
+ CD+GF+ S F SPP C +G TY + GYRK+ + C GG V
Sbjct: 682 YECDFGFKMSEDLSLEVCVPDPEFSGKSYSPPVPCPVGSTYRRTRGYRKISGDTCSGGDV 741
Query: 765 DMQQSQVQLQCPL 777
+ + + CPL
Sbjct: 742 EARLEGELVPCPL 754
>gi|17149834 sortilin 1 preproprotein [Homo sapiens]
Length = 831
Score = 237 bits (604), Expect = 5e-62
Identities = 190/722 (26%), Positives = 330/722 (45%), Gaps = 81/722 (11%)
Query: 93 APGPSPGPAP---GP-----GEDGAPAAGY----RRWERAAP----LAGVASRAQVSLIS 136
AP P P P GP G A A G RW R+AP G L +
Sbjct: 39 APPPPAAPLPRWSGPIGVSWGLRAAAAGGAFPRGGRWRRSAPGEDEECGRVRDFVAKLAN 98
Query: 137 TSFVLKGDATHNQAMVHWTGENSSVILILTKYYHADMGKVL-ESSLWRSSDFGTSYTKLT 195
+ D + W G+++ VIL+LT ++ + +S L+RS D+G ++ +T
Sbjct: 99 NTHQHVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDIT 158
Query: 196 LQPGVTTVIDNF--YICPTNKRKVILVSS-SLSDRDQSLFLSADEGATFQKQPIPFFVET 252
T + F I P N KV+L + S R +F S+D F + +PF T
Sbjct: 159 DLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLT 218
Query: 253 -LIFHPKEEDKVLAYTKESKLYVSSDLGKKWTLLQERVT-----KDHV--FWSVSGVDAD 304
+++ P+ D +LA + E+ L+VS + G KW + + V D+ F + +
Sbjct: 219 QMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGSCK 278
Query: 305 PDLVHVE---AQDLGGDFRYVTCAIHNCSEKMLTAPFAGPIDHGSLTVQDDYIFFKATSA 361
DL +E DLG F+ + I+ S + ++F +
Sbjct: 279 ADLGALELWRTSDLGKSFKTIGVKIY------------------SFGLGGRFLFASVMAD 320
Query: 362 NQT--KYYVSYRRNE-FVLMKLPKYALPKDLQIISTDESQVFVAVQEWYQMDTYNLYQSD 418
T + +VS + + + + +LP + I++ ++ VF+ V E ++ SD
Sbjct: 321 KDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSD 380
Query: 419 PRGVRYALVLQDVRSSRQAEESVLIDILEVRGVKGVFLANQKIDGKVMTLITYNKGRDWD 478
RG+ Y+ L + E+ ++ +RGV + ++ D + T+IT+++G W
Sbjct: 381 DRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSVLSE--DNSIQTMITFDQGGRWT 438
Query: 479 YLRPPS---MDMNGKPTNCKPPDCHLHLHLRWADNPYVSGTVH--TKDTAPGLIMGAGNL 533
+LR P D K N +C LH+H ++ + ++ + ++ A G+++ G++
Sbjct: 439 HLRKPENSECDATAKNKN----ECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSV 494
Query: 534 GSQLVEYKEEMYITSDCGHTWRQVFEEEHHILYLDHGGVIVAIKDTSIPLKILKFSVDEG 593
G + ++YI+ D G++W ++ E H+ LD GG+IVAI+ +S P+ ++KFS DEG
Sbjct: 495 GDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEG 554
Query: 594 LTWSTHNFTSTSVFVDGLLSEPGDETLVMTVFGHIS--FRSDWELVKVDFRPSFSRQCGE 651
W T+ FT ++ GL SEPG ++ ++++G S W +DF+ R C E
Sbjct: 555 QCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSYTIDFKDILERNCEE 614
Query: 652 EDYSSWELSNLQ----GDRCIMGQQRSFRKRKSTSWCIKGRSFTSALTSRVCECRDSDFL 707
+DY+ W + D CI+G + F + + +S C GR + +C C DFL
Sbjct: 615 KDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVTKQPSICLCSLEDFL 674
Query: 708 CDYGFERSSSSESSTNKCSANFWFNPLSPPDD---CALG-QTYTSSLGYRKVVSNVCEGG 763
CD+G+ R + +KC P D C G + + ++ GYRK+ + C+GG
Sbjct: 675 CDFGYYRPEND----SKCVE----QPELKGHDLEFCLYGREEHLTTNGYRKIPGDKCQGG 726
Query: 764 VD 765
V+
Sbjct: 727 VN 728
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 56.2 bits (134), Expect = 2e-07
Identities = 44/125 (35%), Positives = 51/125 (40%), Gaps = 28/125 (22%)
Query: 5 GPSRASKGPGPTARA-PSPGAP--PPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPH 61
G A+ P P RA P G P P P SPR RPL+ AG +P +L P
Sbjct: 81 GAPGAAPEPPPAGRARPGGGGPQRPGPPSPR-RPLV----------PAGPAPPAAKLRPP 129
Query: 62 --------------AQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGED 107
A + P PAG A+P G AR PGP PGP PGPG+
Sbjct: 130 PEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKP 189
Query: 108 GAPAA 112
P A
Sbjct: 190 AGPGA 194
Score = 42.7 bits (99), Expect = 0.002
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 44 GACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPG 103
GA GA +P G G P PPAGRA PGGG ++ P P GPAP
Sbjct: 69 GAAGAGPAAPAEGAPGA------APEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPP 122
Query: 104 PGEDGAPAAG 113
+ P G
Sbjct: 123 AAKLRPPPEG 132
Score = 39.3 bits (90), Expect = 0.022
Identities = 37/136 (27%), Positives = 49/136 (36%), Gaps = 36/136 (26%)
Query: 6 PSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLT 65
P+ S P AP+ PPPP +P A + PG P T
Sbjct: 252 PAAPSPPAAPAPAAPAAAPPPPPPAP-----------------ATLARPPGH--PAGPPT 292
Query: 66 RVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSP---GPAPGPGEDGAPAAGYRRWERAAP 122
P PP A+ GG AP P+P GPA G+ G AA AAP
Sbjct: 293 AAPAVPPPAAAQNGGSAG--------AAPAPAPAAGGPAGVSGQPGPGAAA------AAP 338
Query: 123 LAGVASRAQVSLISTS 138
GV + + ++ +
Sbjct: 339 APGVKAESPKRVVQAA 354
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 54.7 bits (130), Expect = 5e-07
Identities = 43/107 (40%), Positives = 47/107 (43%), Gaps = 18/107 (16%)
Query: 15 PTARAPSPGAPPPPRSPRSRPLLL--LLLLLGACGAAGRSPEPGRLG-----------PH 61
P ARAP P PP SPR P + L +LGA GA GR P R G P
Sbjct: 17 PAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPR 76
Query: 62 AQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDG 108
A TR R P +GR E A+ T PG P SPG A G G
Sbjct: 77 AGPTRTSRPPASGRGE----RAPPAKNTSPG-PVSSPGRASGTTRPG 118
Score = 40.4 bits (93), Expect = 0.010
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 5 GPSRASKGPG-------PTARAPSPG--APPPPRSPRSRPLLL----LLLLLGACGAAGR 51
GP+R S+ P P A+ SPG + P S +RP L L + A G+
Sbjct: 78 GPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGK 137
Query: 52 SPE-PGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDG 108
+ E P R A R P G P +A GTE G P P+P P P +G
Sbjct: 138 ATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEG 195
Score = 38.1 bits (87), Expect = 0.049
Identities = 57/185 (30%), Positives = 68/185 (36%), Gaps = 49/185 (26%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPP-RSPRSR----------------PLLLLLLLLGACG 47
GP + GP T A +PG PPPP RSP S P L G G
Sbjct: 554 GPDTSVSGPRLTL-ALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEG 612
Query: 48 AAGRSPEPGR--LGPH-AQLTRVPRSPPAGRAEPG-----------GGEDR-----QARG 88
A SP P H A +R P P A R PG G D + G
Sbjct: 613 GAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEG 672
Query: 89 TE-----PGA--PGPSPGPAPGPGEDGAPAAGYRRWERAA-----PLAGVASRAQVSLIS 136
E PGA PGPSPG + G GA A R + A PL + + L+S
Sbjct: 673 PESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLS 732
Query: 137 TSFVL 141
+ +L
Sbjct: 733 RTLLL 737
Score = 34.7 bits (78), Expect = 0.54
Identities = 44/140 (31%), Positives = 53/140 (37%), Gaps = 28/140 (20%)
Query: 11 KGPGPTARAPSPGAPPPPRSP--RSRPLLLLLLLLGAC--GAAGRSPE-----------P 55
+ P P A P A PPP++P + P L L A G A SP P
Sbjct: 461 QAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPP 520
Query: 56 GRLGP--HAQLTRVPRSPPAG------RAEPGGGEDRQARG---TEPGAPGPSPGPAPGP 104
+ P A L +VP SPPA R P G D G T APGP P P+ P
Sbjct: 521 PQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSP 580
Query: 105 GE--DGAPAAGYRRWERAAP 122
G AG+ + P
Sbjct: 581 SSTLSGPDLAGHSSSATSTP 600
Score = 34.3 bits (77), Expect = 0.71
Identities = 35/109 (32%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 15 PTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP-----HAQLTRVPR 69
PT +AP P P + S P L L L G RSP GP + T P
Sbjct: 542 PTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPE 601
Query: 70 ------SPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAA 112
S P G A D + P A S GPAP GAP A
Sbjct: 602 ELRGYDSGPEGGAAASPPPDAELAACHPAA--WSRGPAPPLAFRGAPGA 648
Score = 31.2 bits (69), Expect = 6.0
Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 6 PSRASKGP--GPTARAP----SPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLG 59
P R P GP + +P SP APP P +P S L A P
Sbjct: 278 PPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA 337
Query: 60 PHAQLTRVPRSP---PAGRAEPG-GGEDRQARGTEPGAPGPSPGPAPGPGEDGAPA 111
H+ L P SP P +A P QA + P +P SP P P A A
Sbjct: 338 THSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALA 393
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 53.9 bits (128), Expect = 9e-07
Identities = 43/135 (31%), Positives = 53/135 (39%), Gaps = 17/135 (12%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPE------PGRL 58
GP + PGP + PG P PP + ++ GA G G++ E PG +
Sbjct: 548 GPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV 607
Query: 59 GPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPG---APGPS--PGPAPGPGEDG----- 108
GP + P G A P G Q PG PGP+ PG A PGE G
Sbjct: 608 GPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDL 667
Query: 109 -APAAGYRRWERAAP 122
AP R ER P
Sbjct: 668 GAPGPSGARGERGFP 682
Score = 50.8 bits (120), Expect = 7e-06
Identities = 40/117 (34%), Positives = 46/117 (39%), Gaps = 14/117 (11%)
Query: 7 SRASKGP----GPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPE-------- 54
S S GP GP A G P PP P +R ++ G GAAG +
Sbjct: 543 SPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG 602
Query: 55 -PGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAP 110
PG +GP + P G A P G Q PG G PGPA PGE G P
Sbjct: 603 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQG-LPGPAGPPGEAGKP 658
Score = 50.1 bits (118), Expect = 1e-05
Identities = 39/102 (38%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PG R PGAP P + + GA GAAG G GP V
Sbjct: 307 PGERGR---PGAPGPAGARGND---------GATGAAGPPGPTGPAGPPGFPGAVGAKGE 354
Query: 73 AGRAEPGGGEDRQARGTEPGAPGP--SPGPAPGPGEDGAPAA 112
AG P G E Q EPG PGP + GPA PG DG P A
Sbjct: 355 AGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGA 396
Score = 46.6 bits (109), Expect = 1e-04
Identities = 44/125 (35%), Positives = 50/125 (40%), Gaps = 17/125 (13%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGA---CGAAGRSPEPGRLGPH 61
GP+ PG A +PG P P R ++ L G G G S EPG+ GP
Sbjct: 929 GPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPS 988
Query: 62 -AQLTRVPRSP--PAGRAEPGGGEDRQ---------ARGTEPGAPGP--SPGPAPGPGED 107
A R P P P G A P G R+ R PGA G GPA PG
Sbjct: 989 GASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 1048
Query: 108 GAPAA 112
GAP A
Sbjct: 1049 GAPGA 1053
Score = 45.4 bits (106), Expect = 3e-04
Identities = 47/131 (35%), Positives = 51/131 (38%), Gaps = 29/131 (22%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GP+ A G T A PG P P P P + GA G AG G GP
Sbjct: 317 GPAGARGNDGATGAAGPPG-PTGPAGPPGFPGAV-----GAKGEAGPQGPRGSEGPQGVR 370
Query: 65 TRVPRSPPAGRAEPGG--GEDRQ--ARGTE-----------PGAPGPS----PGPAPGP- 104
PAG A P G G D Q A+G PGA GPS PG PGP
Sbjct: 371 GEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPK 430
Query: 105 ---GEDGAPAA 112
GE GAP +
Sbjct: 431 GNSGEPGAPGS 441
Score = 44.3 bits (103), Expect = 7e-04
Identities = 42/129 (32%), Positives = 49/129 (37%), Gaps = 20/129 (15%)
Query: 4 RGPSRASKGP-GPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHA 62
R S +KG G T A PGAP P +P +G G +G E G GP
Sbjct: 1026 RDGSPGAKGDRGETGPAGPPGAPGAPGAPGP---------VGPAGKSGDRGETGPAGPAG 1076
Query: 63 QLTRVPRSPPAGRAEPGGGE-------DRQARGTE--PGAPGPSPGPAPGPGEDGAPAAG 113
+ V PAG P G + DR +G G GP PGP PGE G A
Sbjct: 1077 PVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGP-PGPPGSPGEQGPSGAS 1135
Query: 114 YRRWERAAP 122
R P
Sbjct: 1136 GPAGPRGPP 1144
Score = 43.9 bits (102), Expect = 9e-04
Identities = 39/112 (34%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GP+ + PGP +PGA S G GA G GR+GP
Sbjct: 842 GPAGPAGPPGPIGNVGAPGAKGARGSA------------GPPGATGFPGAAGRVGPPGPS 889
Query: 65 TRV-PRSPPAGRAEPGGGEDRQARGT--EPGAPGPSPGPAPGP-GEDGAPAA 112
P PP + GG R G PG GP PGP PGP GE G+P A
Sbjct: 890 GNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGP-PGP-PGPAGEKGSPGA 939
Score = 43.1 bits (100), Expect = 0.002
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Query: 13 PGPTARAPSPGAPPP---PRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPR 69
PGP SPGA P P +P + + ++G G G PG GP + +
Sbjct: 928 PGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGP 987
Query: 70 SPPAGRAEPGGGEDRQARGTEPGAPG--PSPGPAPGPGEDGAPAAGYRRWE 118
S +G P G PG G +PG PG DG+P A R E
Sbjct: 988 SGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 1038
Score = 42.7 bits (99), Expect = 0.002
Identities = 44/128 (34%), Positives = 52/128 (40%), Gaps = 27/128 (21%)
Query: 2 AHRGPSRASKGPGPTARAPS----PGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGR 57
A+ P A P AR PS PG PP P+ P GA G+ G + G
Sbjct: 399 ANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEP--------GAPGSKGDTGAKGE 450
Query: 58 LGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRW 117
GP + PP E G R ARG PGP+ P P PGE G P G R +
Sbjct: 451 PGPVGV-----QGPPGPAGEEG---KRGARGE----PGPTGLPGP-PGERGGP--GSRGF 495
Query: 118 ERAAPLAG 125
A +AG
Sbjct: 496 PGADGVAG 503
Score = 42.7 bits (99), Expect = 0.002
Identities = 41/131 (31%), Positives = 47/131 (35%), Gaps = 35/131 (26%)
Query: 5 GPSRASKGPGPTARAPSPGAP-----------PPPRSPRSRPLLLLLLLLGACGAAGRSP 53
GP PGP + PGAP P P + P G G G+
Sbjct: 419 GPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPP--------GPAGEEGKRG 470
Query: 54 EPGRLGPHAQLTRVPRSP-----PAGRAEPGGGEDRQARGT--EPGAPGP-----SPGPA 101
G GP T +P P P R PG +G E G+PGP SPG A
Sbjct: 471 ARGEPGP----TGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEA 526
Query: 102 PGPGEDGAPAA 112
PGE G P A
Sbjct: 527 GRPGEAGLPGA 537
Score = 42.0 bits (97), Expect = 0.003
Identities = 39/124 (31%), Positives = 47/124 (37%), Gaps = 7/124 (5%)
Query: 5 GPSRASKGPGPTARAPSPGA-----PPPPRSPRSRPLLLLLL-LLGACGAAGRSPEPGRL 58
GP A PG GA PP P P P + + GA GA G + PG
Sbjct: 815 GPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGAT 874
Query: 59 GPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWE 118
G RV P+G A P G + G G + GPA PGE G P E
Sbjct: 875 GFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGET-GPAGRPGEVGPPGPPGPAGE 933
Query: 119 RAAP 122
+ +P
Sbjct: 934 KGSP 937
Score = 41.6 bits (96), Expect = 0.004
Identities = 34/103 (33%), Positives = 39/103 (37%), Gaps = 21/103 (20%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGP + G P PP +P + G G G EPG GP PR PP
Sbjct: 178 PGPMGPSGPRGLPGPPGAPGPQ---------GFQGPPGEPGEPGASGPMG-----PRGPP 223
Query: 73 A--GRAEPGGGEDRQARGTEPGAPGPS-----PGPAPGPGEDG 108
G+ G + R E G PGP PG A PG G
Sbjct: 224 GPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKG 266
Score = 41.6 bits (96), Expect = 0.004
Identities = 37/108 (34%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
G A+ PGP G SP + L +G G AG + G GP
Sbjct: 731 GERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSG-- 788
Query: 65 TRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAA 112
P P R PG RG EPG PGP+ G A PG DG P A
Sbjct: 789 ---PAGPTGARGAPGD------RG-EPGPPGPA-GFAGPPGADGQPGA 825
Score = 40.8 bits (94), Expect = 0.008
Identities = 37/120 (30%), Positives = 47/120 (39%), Gaps = 20/120 (16%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRS---PRSRPLLLLLLLLGACGAAGRSPEPGRLGP 60
+GP+ PGP SPG P P ++ L G+ G+ G + G GP
Sbjct: 505 KGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLT------GSPGSPGPDGKTGPPGP 558
Query: 61 HAQLTRV-PRSPPAGRAE--------PGGGEDRQARGTEPGAPGP--SPGPAPGPGEDGA 109
Q R P PP R + P G + E G PGP + GPA GE GA
Sbjct: 559 AGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGA 618
Score = 39.3 bits (90), Expect = 0.022
Identities = 39/126 (30%), Positives = 43/126 (34%), Gaps = 13/126 (10%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACG-AAGRSPEPGRLGPHAQ 63
GP PG PG P PP P L G + G PG +GP
Sbjct: 127 GPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSG- 185
Query: 64 LTRVPRSPPAGRAEPG--GGEDRQARGTEPGAPGPS-----PGPAPGPGEDGAPAAGYRR 116
PR P PG G + EPGA GP PGP G+DG R
Sbjct: 186 ----PRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP 241
Query: 117 WERAAP 122
ER P
Sbjct: 242 GERGPP 247
Score = 38.9 bits (89), Expect = 0.029
Identities = 38/106 (35%), Positives = 42/106 (39%), Gaps = 24/106 (22%)
Query: 4 RGPSRASKGPGPTARAPSPG-APPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHA 62
+GPS AS GP PG A PP S R GA G+ GR PG G
Sbjct: 985 QGPSGASGERGPPGPMGPPGLAGPPGESGREG-------APGAEGSPGRDGSPGAKGDRG 1037
Query: 63 QLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDG 108
+ P PP PG PGAPGP GPA G+ G
Sbjct: 1038 ETG--PAGPPGA---PGA----------PGAPGP-VGPAGKSGDRG 1067
Score = 38.1 bits (87), Expect = 0.049
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 44 GACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTE-----PGAPGPSP 98
G G+ G + PG++G PR P R PG ARG + G PGP+
Sbjct: 287 GEPGSPGENGAPGQMG--------PRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPT- 337
Query: 99 GPAPGPGEDGAPAA 112
GPA PG GA A
Sbjct: 338 GPAGPPGFPGAVGA 351
Score = 38.1 bits (87), Expect = 0.049
Identities = 33/127 (25%), Positives = 40/127 (31%), Gaps = 41/127 (32%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGP+ A PG P P + G G G + PG +GP P P
Sbjct: 886 PGPSGNAGPPGPPGPAGKEGGK---------GPRGETGPAGRPGEVGPPG-----PPGPA 931
Query: 73 AGRAEPGGGEDRQARGTEPGAPGPS-----------------------PGPAPGPGEDGA 109
+ PG A PG PGP PGP+ PG+ G
Sbjct: 932 GEKGSPGADGPAGA----PGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGP 987
Query: 110 PAAGYRR 116
A R
Sbjct: 988 SGASGER 994
Score = 37.4 bits (85), Expect = 0.083
Identities = 37/117 (31%), Positives = 41/117 (35%), Gaps = 20/117 (17%)
Query: 4 RGPSRASKGPGPTARAPSPG-----APPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRL 58
+G S S GPT +PG PP P P GA G G EPG
Sbjct: 781 KGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPP--------GADGQPGAKGEPGDA 832
Query: 59 GPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYR 115
G + P G A P G PGA G + G A PG G P A R
Sbjct: 833 GAKGD------AGPPGPAGPAGPPGPIGNVGAPGAKG-ARGSAGPPGATGFPGAAGR 882
Score = 35.8 bits (81), Expect = 0.24
Identities = 40/129 (31%), Positives = 44/129 (34%), Gaps = 27/129 (20%)
Query: 4 RGPSRASKGPGPTA--RAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLG-P 60
+G + A PGP P P R R P G G G PG G P
Sbjct: 442 KGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPT-----GLPGPPGERGGPGSRGFP 496
Query: 61 HAQLTRVPRSPPAGRAEPG--------GGEDRQARGTEPGAPG-----PSPGP-----AP 102
A P+ P R PG G R PGA G SPGP P
Sbjct: 497 GADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPP 556
Query: 103 GP-GEDGAP 110
GP G+DG P
Sbjct: 557 GPAGQDGRP 565
Score = 34.3 bits (77), Expect = 0.71
Identities = 36/134 (26%), Positives = 43/134 (32%), Gaps = 31/134 (23%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRS-------RPLLLLLLLLGACGAAGRSPEPGR 57
GP+ + GP A P P PR + R + G G G PG
Sbjct: 1070 GPAGPAGPVGPVG-ARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGE 1128
Query: 58 LGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPS-----------------PGP 100
GP S PAG P G + G PGP PGP
Sbjct: 1129 QGPSGA------SGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGP 1182
Query: 101 APGPGEDGAPAAGY 114
PG G P+AG+
Sbjct: 1183 PGPPGPPGPPSAGF 1196
Score = 31.6 bits (70), Expect = 4.6
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 72 PAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAG 113
P G P G R +PG PGP PGP PG G P G
Sbjct: 119 PRGPRGPAGPPGRDGIPGQPGLPGP-PGP---PGPPGPPGLG 156
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 52.0 bits (123), Expect = 3e-06
Identities = 39/102 (38%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 15 PTARAPSPGAPPPPRSPRSRPLLL--LLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
P ARAP P PP SPR P + L +LGA GA GR P R G T +P
Sbjct: 17 PAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPR 76
Query: 73 AGRAEPGGGEDR--------QARGTE-PGAPGPSPGPAPGPG 105
AG G R RG P A SPGP PG
Sbjct: 77 AGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPG 118
Score = 38.5 bits (88), Expect = 0.037
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 2 AHRGPS--RASKGPGPTARAPSPGAPPPPRSPRSRPLLL----LLLLLGACGAAGRSPE- 54
A R P+ R + P +P P + P S +RP L L + A G++ E
Sbjct: 91 ASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEA 150
Query: 55 PGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDG 108
P R A R P G P +A GTE G P P+P P P +G
Sbjct: 151 PKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEG 204
Score = 38.1 bits (87), Expect = 0.049
Identities = 57/185 (30%), Positives = 68/185 (36%), Gaps = 49/185 (26%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPP-RSPRSR----------------PLLLLLLLLGACG 47
GP + GP T A +PG PPPP RSP S P L G G
Sbjct: 593 GPDTSVSGPRLTL-ALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEG 651
Query: 48 AAGRSPEPGR--LGPH-AQLTRVPRSPPAGRAEPG-----------GGEDR-----QARG 88
A SP P H A +R P P A R PG G D + G
Sbjct: 652 GAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEG 711
Query: 89 TE-----PGA--PGPSPGPAPGPGEDGAPAAGYRRWERAA-----PLAGVASRAQVSLIS 136
E PGA PGPSPG + G GA A R + A PL + + L+S
Sbjct: 712 PESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLS 771
Query: 137 TSFVL 141
+ +L
Sbjct: 772 RTLLL 776
Score = 34.7 bits (78), Expect = 0.54
Identities = 44/140 (31%), Positives = 53/140 (37%), Gaps = 28/140 (20%)
Query: 11 KGPGPTARAPSPGAPPPPRSP--RSRPLLLLLLLLGAC--GAAGRSPE-----------P 55
+ P P A P A PPP++P + P L L A G A SP P
Sbjct: 500 QAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPP 559
Query: 56 GRLGP--HAQLTRVPRSPPAG------RAEPGGGEDRQARG---TEPGAPGPSPGPAPGP 104
+ P A L +VP SPPA R P G D G T APGP P P+ P
Sbjct: 560 PQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSP 619
Query: 105 GE--DGAPAAGYRRWERAAP 122
G AG+ + P
Sbjct: 620 SSTLSGPDLAGHSSSATSTP 639
Score = 34.3 bits (77), Expect = 0.71
Identities = 35/109 (32%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 15 PTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP-----HAQLTRVPR 69
PT +AP P P + S P L L L G RSP GP + T P
Sbjct: 581 PTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPE 640
Query: 70 ------SPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAA 112
S P G A D + P A S GPAP GAP A
Sbjct: 641 ELRGYDSGPEGGAAASPPPDAELAACHPAA--WSRGPAPPLAFRGAPGA 687
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 52.0 bits (123), Expect = 3e-06
Identities = 39/102 (38%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 15 PTARAPSPGAPPPPRSPRSRPLLL--LLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
P ARAP P PP SPR P + L +LGA GA GR P R G T +P
Sbjct: 17 PAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPR 76
Query: 73 AGRAEPGGGEDR--------QARGTE-PGAPGPSPGPAPGPG 105
AG G R RG P A SPGP PG
Sbjct: 77 AGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPG 118
Score = 38.5 bits (88), Expect = 0.037
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 7/114 (6%)
Query: 2 AHRGPS--RASKGPGPTARAPSPGAPPPPRSPRSRPLLL----LLLLLGACGAAGRSPE- 54
A R P+ R + P +P P + P S +RP L L + A G++ E
Sbjct: 91 ASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEA 150
Query: 55 PGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDG 108
P R A R P G P +A GTE G P P+P P P +G
Sbjct: 151 PKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEG 204
Score = 38.1 bits (87), Expect = 0.049
Identities = 57/185 (30%), Positives = 68/185 (36%), Gaps = 49/185 (26%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPP-RSPRSR----------------PLLLLLLLLGACG 47
GP + GP T A +PG PPPP RSP S P L G G
Sbjct: 862 GPDTSVSGPRLTL-ALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEG 920
Query: 48 AAGRSPEPGR--LGPH-AQLTRVPRSPPAGRAEPG-----------GGEDR-----QARG 88
A SP P H A +R P P A R PG G D + G
Sbjct: 921 GAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEG 980
Query: 89 TE-----PGA--PGPSPGPAPGPGEDGAPAAGYRRWERAA-----PLAGVASRAQVSLIS 136
E PGA PGPSPG + G GA A R + A PL + + L+S
Sbjct: 981 PESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLS 1040
Query: 137 TSFVL 141
+ +L
Sbjct: 1041 RTLLL 1045
Score = 34.7 bits (78), Expect = 0.54
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 6 PSRASKGPG-----PTARAP-SPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLG 59
PS + PG P+A P SP A PPP++P P+L LL P P
Sbjct: 801 PSPPASFPGQAPFSPSASLPMSPLATPPPQAP---PVLAAPLLQVP-------PSP---- 846
Query: 60 PHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWER 119
P + + PR PP + R PG P P P +P G AG+
Sbjct: 847 PASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPP-PPPSRSPSSTLSGPDLAGHSSSAT 905
Query: 120 AAP 122
+ P
Sbjct: 906 STP 908
Score = 34.3 bits (77), Expect = 0.71
Identities = 35/109 (32%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 15 PTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP-----HAQLTRVPR 69
PT +AP P P + S P L L L G RSP GP + T P
Sbjct: 850 PTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPE 909
Query: 70 ------SPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAA 112
S P G A D + P A S GPAP GAP A
Sbjct: 910 ELRGYDSGPEGGAAASPPPDAELAACHPAA--WSRGPAPPLAFRGAPGA 956
Score = 32.3 bits (72), Expect = 2.7
Identities = 32/91 (35%), Positives = 34/91 (37%), Gaps = 18/91 (19%)
Query: 13 PGPTARAP-SPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSP 71
P P A P SP A PPPR P PLL A P P P + L + P
Sbjct: 739 PSPPASPPMSPSATPPPRVP---PLL-------AAPPLQVPPSPPASLPMSPLAKPPPQA 788
Query: 72 PAGRAEPGGGEDRQARGTEPGAPGPSPGPAP 102
P A P QA P P PG AP
Sbjct: 789 PPALATP----PLQAL---PSPPASFPGQAP 812
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 50.8 bits (120), Expect = 7e-06
Identities = 37/102 (36%), Positives = 41/102 (40%), Gaps = 18/102 (17%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGPT PG P PP G G G +PG +GP R R P
Sbjct: 671 PGPTGFQGLPGPPGPPGEG------------GKPGDQGVPGDPGAVGPLGP--RGERGNP 716
Query: 73 AGRAEPG----GGEDRQARGTEPGAPGPSPGPAPGPGEDGAP 110
R EPG GE A G P P SPGP+ PG+ G P
Sbjct: 717 GERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPP 758
Score = 47.8 bits (112), Expect = 6e-05
Identities = 41/123 (33%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 4 RGPSRASKGPGPTARA--PSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPH 61
+GP A+ PG R P P P P P P G+ PG G
Sbjct: 902 QGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEP--------------GKEGPPGLRGDP 947
Query: 62 AQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPS--PGPAPGPGEDGAPAAGYRRWER 119
RV PAG PGG D+ G E G PGP PGPA G+ G +R ER
Sbjct: 948 GSHGRVGDRGPAG--PPGGPGDKGDPG-EDGQPGPDGPPGPAGTTGQRGIVGMPGQRGER 1004
Query: 120 AAP 122
P
Sbjct: 1005 GMP 1007
Score = 44.3 bits (103), Expect = 7e-04
Identities = 39/121 (32%), Positives = 45/121 (37%), Gaps = 20/121 (16%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSP----RSRPLLLLLLLLGACGAAGRSP--EPGR 57
RGP PG + +PG P P P SRP + L G PG
Sbjct: 155 RGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGS 214
Query: 58 LGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGP--------SPGPAPGPGEDGA 109
+GP PR P + + GG G EPG PGP GP PGEDG
Sbjct: 215 VGPVG-----PRGPQGLQGQQGGAGPTGPPG-EPGDPGPMGPIGSRGPEGPPGKPGEDGE 268
Query: 110 P 110
P
Sbjct: 269 P 269
Score = 43.9 bits (102), Expect = 9e-04
Identities = 33/98 (33%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PG PG P P +P +G GA G PG +GP V P
Sbjct: 998 PGQRGERGMPGLPGPAGTPGK---------VGPTGATGDKGPPGPVGPPGSNGPVGEPGP 1048
Query: 73 AGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAP 110
G A G R E G G PGPA PG GAP
Sbjct: 1049 EGPAGNDGTPGRDGAVGERGDRG-DPGPAGLPGSQGAP 1085
Score = 42.4 bits (98), Expect = 0.003
Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 19/125 (15%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQ 63
+GP+ + GP A PG+P P S + + G G G + G GPH
Sbjct: 431 KGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHG- 489
Query: 64 LTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGP-----APG----PGEDGAPAAGY 114
+ P PP G E ++ +PG GP PGP APG PG DG P
Sbjct: 490 -IQGPIGPP-------GEEGKRGPRGDPGTVGP-PGPVGERGAPGNRGFPGSDGLPGPKG 540
Query: 115 RRWER 119
+ ER
Sbjct: 541 AQGER 545
Score = 40.4 bits (93), Expect = 0.010
Identities = 34/119 (28%), Positives = 40/119 (33%), Gaps = 1/119 (0%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQ 63
RGP+ GPG G P P P ++G G G PG GP
Sbjct: 956 RGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGT 1015
Query: 64 LTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERAAP 122
+V + G P G G PGP GPA G G A R +R P
Sbjct: 1016 PGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPE-GPAGNDGTPGRDGAVGERGDRGDP 1073
Score = 39.7 bits (91), Expect = 0.017
Identities = 37/108 (34%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 6 PSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLT 65
P P AR PGAP P R L G GA G E G GP +
Sbjct: 275 PGEVGFAGSPGARG-FPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMG 333
Query: 66 RV-PRSPPA--GRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAP 110
+ PR P GR P G ++ PG PGP GP PG G P
Sbjct: 334 PLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPM-GPLGIPGSSGFP 380
Score = 39.7 bits (91), Expect = 0.017
Identities = 37/116 (31%), Positives = 44/116 (37%), Gaps = 26/116 (22%)
Query: 8 RASKG-PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTR 66
R +G PGP S GAP P +GA G AG+ +PG GP R
Sbjct: 1067 RGDRGDPGPAGLPGSQGAPGTPGP------------VGAPGDAGQRGDPGSRGPIGPPGR 1114
Query: 67 VPR----SPPAGRAEPGGGEDRQARGTE--------PGAPGPSPGPAPGPGEDGAP 110
+ P R + G DR RG + G PGP PGP G G P
Sbjct: 1115 AGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGP-PGPNGEQGSAGIP 1169
Score = 38.9 bits (89), Expect = 0.029
Identities = 34/115 (29%), Positives = 35/115 (30%), Gaps = 29/115 (25%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGP A SPG P P P G G G PG G RV P
Sbjct: 875 PGPQGLAGSPG----PHGPNGVP--------GLKGGRGTQGPPGATGFPGSAGRVGPPGP 922
Query: 73 AGRAEPGG-----------------GEDRQARGTEPGAPGPSPGPAPGPGEDGAP 110
AG P G G + P P PG PGEDG P
Sbjct: 923 AGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQP 977
Score = 37.7 bits (86), Expect = 0.064
Identities = 34/119 (28%), Positives = 43/119 (36%), Gaps = 19/119 (15%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQ 63
RGP +S GP PG P P P GA G + PG GP +
Sbjct: 545 RGPVGSS---GPKGSQGDPGRPGEPGLP---------------GARGLTGNPGVQGPEGK 586
Query: 64 LTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERAAP 122
L + GR P G + + G PGP G + PG+ G +R AP
Sbjct: 587 LGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPK-GSSGDPGKPGEAGNAGVPGQRGAP 644
Score = 37.7 bits (86), Expect = 0.064
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 14 GPTARAPSPGAPPPPRSP--RSRPLLLLLL-LLGACGAAGRSPEPGRLGPHAQLTRVPRS 70
GP G P PP S R +P + L G+ G G+ E G G Q +
Sbjct: 588 GPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKD 647
Query: 71 PPAGRAEPGGGEDRQARGTEPGAPGPS-----PGPAPGPGEDGAP 110
G + P G E G PGP+ PGP PGE G P
Sbjct: 648 GEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKP 692
Score = 36.6 bits (83), Expect = 0.14
Identities = 38/129 (29%), Positives = 45/129 (34%), Gaps = 20/129 (15%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GP+ A GP + G P P SP L + G GA G + PG GP
Sbjct: 390 GPTGARGPEGPQGQRGETGPPGPVGSPG---LPGAIGTDGTPGAKGPTGSPGTSGPPGS- 445
Query: 65 TRVPRSPPAGRAEPGGGEDRQARGTEPGAPG-------PSPGPAPGP----GEDGAPAAG 113
+ P G P G Q +PG PG P PGP G G P
Sbjct: 446 -----AGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEE 500
Query: 114 YRRWERAAP 122
+R R P
Sbjct: 501 GKRGPRGDP 509
Score = 35.0 bits (79), Expect = 0.41
Identities = 38/128 (29%), Positives = 45/128 (35%), Gaps = 28/128 (21%)
Query: 13 PGPTARAPSPGAP-----PPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRV 67
PGP G P P P+ P G G AG + PG+ G + V
Sbjct: 599 PGPPGSIGIRGQPGSMGLPGPKGSSGDP--------GKPGEAGNAGVPGQRGAPGKDGEV 650
Query: 68 PRSPPAGRAEPGGGEDRQARGTE--------PGAPGP-----SPGPAPGPGEDGAPAAGY 114
S P G PG +R +G PG PGP PG PG+ GA
Sbjct: 651 GPSGPVG--PPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLG 708
Query: 115 RRWERAAP 122
R ER P
Sbjct: 709 PRGERGNP 716
Score = 33.9 bits (76), Expect = 0.92
Identities = 38/112 (33%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 10 SKGP-GPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHA--QLTR 66
SKG GPT + G P P R L G GA G +PG +GP +
Sbjct: 319 SKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSG 378
Query: 67 VPRSPPA-GRAEPGG-----GEDRQARGTEPGAPGPSPGPAPGPGEDGAPAA 112
P +P G A P G G Q T P P SPG G DG P A
Sbjct: 379 FPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGA 430
Score = 33.5 bits (75), Expect = 1.2
Identities = 27/93 (29%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 20 PSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPG 79
P P PR P+ L G G AG + PG G + + P G
Sbjct: 212 PGSVGPVGPRGPQG--------LQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKP 263
Query: 80 GGEDRQARGTEPGAPG--PSPGPAPGPGEDGAP 110
G + R PG G SPG PG G P
Sbjct: 264 GEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLP 296
Score = 32.3 bits (72), Expect = 2.7
Identities = 33/94 (35%), Positives = 35/94 (37%), Gaps = 27/94 (28%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGP S G P P PR P G G +G+ PG LGP PP
Sbjct: 1157 PGPNGEQGSAGIPGP-FGPRGPP--------GPVGPSGKEGNPGPLGPIG--------PP 1199
Query: 73 AGRAEPGGGEDRQARGTEPGAPGPS--PGPAPGP 104
R G G E G PG PGP PGP
Sbjct: 1200 GVRGSVGEA------GPE-GPPGEPGPPGP-PGP 1225
Score = 31.2 bits (69), Expect = 6.0
Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 24/117 (20%)
Query: 13 PGPTARAPSPGAPPP-----PRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRV 67
PGP G P P P R P G+ G G + G GP
Sbjct: 806 PGPAGPTGEKGEPGPRGLVGPPGSRGNP--------GSRGENGPTGAVGFAGPQG----- 852
Query: 68 PRSPPAGRAEPGGGEDRQARGTEPGAPGPSP-GPAPGP-GEDGAPAAGYRRWERAAP 122
P P + EPG + + G+PGP +PGP G +G P R + P
Sbjct: 853 PDGQPGVKGEPG----EPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPP 905
Score = 30.8 bits (68), Expect = 7.8
Identities = 40/128 (31%), Positives = 42/128 (32%), Gaps = 39/128 (30%)
Query: 10 SKGP-GPTARAPSPGAPPP--PRSPRS-------------RPLLLLLLLLGACGAAGRSP 53
S+GP GP RA G P P PR + R L L G G G
Sbjct: 1105 SRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQG 1164
Query: 54 EPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGP-----------SPGPAP 102
G GP PR PP G P G E PG GP GP
Sbjct: 1165 SAGIPGPFG-----PRGPP-GPVGPSGKEGN------PGPLGPIGPPGVRGSVGEAGPEG 1212
Query: 103 GPGEDGAP 110
PGE G P
Sbjct: 1213 PPGEPGPP 1220
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 50.1 bits (118), Expect = 1e-05
Identities = 45/133 (33%), Positives = 55/133 (41%), Gaps = 29/133 (21%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSP-----RSRPLLLLLLLLGACGAAGRSPEPGRLG 59
GP R +G A P P PP R P + P GA G AG EPG+ G
Sbjct: 172 GP-RGDQGQDGAAGPPGPPGPPGARGPPGDTGKDGPR-------GAQGPAGPKGEPGQDG 223
Query: 60 PHAQLTRVPRSPPAGRAEPG--GGEDRQARGTEPGAPGP-----SPGPAPGPGEDGAPA- 111
P+ PP + EPG G + ++PG PGP S GP G DGAP
Sbjct: 224 EMG-----PKGPPGPKGEPGVPGKKGDDGTPSQPGPPGPKGEPGSMGPRGENGVDGAPGP 278
Query: 112 ---AGYRRWERAA 121
G+R + AA
Sbjct: 279 KGEPGHRGTDGAA 291
Score = 38.9 bits (89), Expect = 0.029
Identities = 35/111 (31%), Positives = 39/111 (35%), Gaps = 23/111 (20%)
Query: 2 AHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPH 61
A PS PGP R PG P P G +GR PG LG
Sbjct: 109 AREAPSECVCPPGPPGRRGKPGRRGDPGPP---------------GQSGRDGYPGPLGLD 153
Query: 62 AQLTRVPRSPPAGRAEPGGGEDRQARGT--EPGAPGPSPGPAPGPGEDGAP 110
+ P + E G D RG + GA GP PGP PG G P
Sbjct: 154 GK-----PGLPGPKGEKGAPGDFGPRGDQGQDGAAGP-PGPPGPPGARGPP 198
Score = 36.6 bits (83), Expect = 0.14
Identities = 33/120 (27%), Positives = 39/120 (32%), Gaps = 21/120 (17%)
Query: 5 GPSRASKGPGPTARAPSPGAPPP-----------PRSPRSRPLLLLLLLLGACGAAGRSP 53
G S PGP PG P P PR + + GA G G
Sbjct: 139 GQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGDQGQD--------GAAGPPGPPG 190
Query: 54 EPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGP--SPGPAPGPGEDGAPA 111
PG GP + G A P G + G PGP PG G+DG P+
Sbjct: 191 PPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKGEPGVPGKKGDDGTPS 250
Score = 34.3 bits (77), Expect = 0.71
Identities = 34/115 (29%), Positives = 39/115 (33%), Gaps = 5/115 (4%)
Query: 1 MAHRGPSRASKGPGPTARAPSPGAP--PPPRSPRSRPLLLLLL-LLGACGAAGRSPEPGR 57
M +GP PG + G P P P P+ P + G GA G EPG
Sbjct: 225 MGPKGPPGPKGEPGVPGKKGDDGTPSQPGPPGPKGEPGSMGPRGENGVDGAPGPKGEPGH 284
Query: 58 LGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAA 112
G PR P + E G G A PGP PG G P A
Sbjct: 285 RGTDGAAG--PRGAPGLKGEQGDTVVIDYDGRILDALKGPPGPQGPPGPPGIPGA 337
>gi|169205117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 49.7 bits (117), Expect = 2e-05
Identities = 47/131 (35%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLL----LLLLGACGAAGRSPEPGRL-- 58
G SR + GP P RAP P PPPP R LL + LL + A GR R+
Sbjct: 111 GVSRTTAGPTPIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICA 170
Query: 59 -GPHAQLTRVP---------------RSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAP 102
G + Q + P SP G A PG E + R P APGPSP P P
Sbjct: 171 NGFYKQSRKTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRL-PRAPGPSPPPLP 229
Query: 103 GPGEDGAPAAG 113
A AAG
Sbjct: 230 A----SADAAG 236
>gi|169204510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 49.3 bits (116), Expect = 2e-05
Identities = 47/131 (35%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLL----LLLLGACGAAGRSPEPGRL-- 58
G SR + GP P RAP P PPPP R LL + LL + A GR R+
Sbjct: 111 GVSRTTAGPTPIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICA 170
Query: 59 -GPHAQLTRVP---------------RSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAP 102
G + Q + P SP G A PG E + R P APGPSP P P
Sbjct: 171 NGFYKQSRKTPVCCRVLLVRARGKPGCSPRRGAAGPGACELGEGRRL-PRAPGPSPPPLP 229
Query: 103 GPGEDGAPAAG 113
A AAG
Sbjct: 230 A----SADAAG 236
>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
sapiens]
Length = 238
Score = 49.3 bits (116), Expect = 2e-05
Identities = 39/104 (37%), Positives = 42/104 (40%), Gaps = 35/104 (33%)
Query: 11 KGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRS 70
+GPGP AP+ P PP GA G GR + G GP
Sbjct: 38 RGPGPDG-APASVPPFPP---------------GAKGEVGRRGKAGLRGPPG-------- 73
Query: 71 PPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGY 114
PP R PG EPG PGP P PGPG APAAGY
Sbjct: 74 PPGPRGPPG----------EPGRPGPPGPPGPGPG-GVAPAAGY 106
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 48.5 bits (114), Expect = 4e-05
Identities = 42/134 (31%), Positives = 50/134 (37%), Gaps = 36/134 (26%)
Query: 4 RGPSRASKGPGPTARAPSPGA-----PPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRL 58
+GP A+ PG R PG+ PP P P + G GA G S PGR
Sbjct: 890 QGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKD--------GPKGARGDSGPPGRA 941
Query: 59 GPHAQLTRVPRSPPAGRAEPGGGEDRQARGT--------------------EPGAPGPSP 98
G + P PP + EPG A G E G PG P
Sbjct: 942 GEPG--LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG-LP 998
Query: 99 GPAPGPGEDGAPAA 112
GP+ PG+ GAP A
Sbjct: 999 GPSGEPGKQGAPGA 1012
Score = 47.0 bits (110), Expect = 1e-04
Identities = 43/138 (31%), Positives = 48/138 (34%), Gaps = 24/138 (17%)
Query: 4 RGPSRASKGPGPTARAPSPGAP-----PPPRSPRSRPLL---LLLLLLGA----CGAAGR 51
RG PGP R PG P P P P P L + G G A
Sbjct: 137 RGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQL 196
Query: 52 SPEPGRLGPHAQLTRVPRSPP--AGRAEPGGGEDRQARGTEPGAPGPS-----PGPAPGP 104
G +GP PR PP AG P G + EPG GP PGP P
Sbjct: 197 GVMQGPMGPMG-----PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKP 251
Query: 105 GEDGAPAAGYRRWERAAP 122
G+DG + ER P
Sbjct: 252 GDDGEAGKPGKAGERGPP 269
Score = 46.6 bits (109), Expect = 1e-04
Identities = 44/137 (32%), Positives = 49/137 (35%), Gaps = 27/137 (19%)
Query: 1 MAHRGPSRASKGPGPTARAPSPG-----APPPPRSPRSRPLLLLLLLL------------ 43
M RGP PG A PG PP P+ R P L +
Sbjct: 239 MGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGA 298
Query: 44 ----GACGAAGRSPEPGRLGPHAQLTRVPRSPPA--GRAEPGGGEDRQARGTEPGAPGP- 96
GA G G S PG G + PR P GR P G + +PG GP
Sbjct: 299 KGEAGAPGVKGESGSPGENGSPGPMG--PRGLPGERGRTGPAGAAGARGNDGQPGPAGPP 356
Query: 97 -SPGPAPGPGEDGAPAA 112
GPA GPG GAP A
Sbjct: 357 GPVGPAGGPGFPGAPGA 373
Score = 46.2 bits (108), Expect = 2e-04
Identities = 41/113 (36%), Positives = 48/113 (42%), Gaps = 21/113 (18%)
Query: 3 HRGPSRASKGPGPTARAPSPGAPPP--PRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP 60
HRG + PGP + GA P P PR P + G G G + PG +GP
Sbjct: 1132 HRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV-----GPSGKDGANGIPGPIGP 1186
Query: 61 HAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAG 113
R + PAG PG PG PGP PGP PGPG D + AG
Sbjct: 1187 PGPRGRSGETGPAG--PPGN----------PGPPGP-PGP-PGPGIDMSAFAG 1225
Score = 45.8 bits (107), Expect = 2e-04
Identities = 44/130 (33%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 5 GPS--RASKG-PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPH 61
GP+ R +G PGP+ PG P PP +P G G G + PG +GP
Sbjct: 648 GPAGERGEQGAPGPSGFQGLPGPPGPP-GEGGKP--------GDQGVPGEAGAPGLVGPR 698
Query: 62 AQLTRVPRSPPAGRAEPGGGEDRQARGTE--PGAPGP--SPGPAPGPGEDGAPAAGYRRW 117
+ R P R PG + RG PG GP + GPA PG G P
Sbjct: 699 GE-----RGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPG 753
Query: 118 ERAAPLAGVA 127
ER A AG+A
Sbjct: 754 ERGA--AGIA 761
Score = 45.4 bits (106), Expect = 3e-04
Identities = 38/123 (30%), Positives = 48/123 (39%), Gaps = 16/123 (13%)
Query: 5 GPSRASKGPGPTARAPSPG--APPPPRSPRSRPLLLLLL-LLGACGAAGRSPEPGRLGPH 61
G + PG + SPG P P PR P GA GA G +PG GP
Sbjct: 297 GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP 356
Query: 62 AQLTRV-----PRSP-------PAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGA 109
+ P +P P G P G + + PG+PGP+ G + PG DG
Sbjct: 357 GPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPA-GASGNPGTDGI 415
Query: 110 PAA 112
P A
Sbjct: 416 PGA 418
Score = 44.7 bits (104), Expect = 5e-04
Identities = 40/127 (31%), Positives = 43/127 (33%), Gaps = 29/127 (22%)
Query: 1 MAHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP 60
M GP A+ PG PGAP G G G+ E G GP
Sbjct: 602 MGFPGPKGANGEPGKAGEKGLPGAP------------------GLRGLPGKDGETGAAGP 643
Query: 61 HAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGP-----SPGPAPGPGEDGAPAAGYR 115
P P R E G +G PG PGP PG PGE GAP
Sbjct: 644 PG-----PAGPAGERGEQGAPGPSGFQGL-PGPPGPPGEGGKPGDQGVPGEAGAPGLVGP 697
Query: 116 RWERAAP 122
R ER P
Sbjct: 698 RGERGFP 704
Score = 43.9 bits (102), Expect = 9e-04
Identities = 38/111 (34%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHA- 62
RG PGP + +PG P + S GA G AG PG GP
Sbjct: 392 RGEPGTPGSPGPAGASGNPGTDGIPGAKGSA---------GAPGIAGAPGFPGPRGPPGP 442
Query: 63 QLTRVPRSPPAGRAEPG--GGEDRQARGTEPGAPGP--SPGPAPGPGEDGA 109
Q P P EPG G + Q EPG GP +PGPA G+ GA
Sbjct: 443 QGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGA 493
Score = 42.4 bits (98), Expect = 0.003
Identities = 37/123 (30%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GP PG G P +P R L GA G GR EPG G
Sbjct: 504 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 563
Query: 65 TRVPRSPPAGRAEPGGGEDRQARGTEPGAPGP-----SPGPAPGPGEDGAPAAGYRRWER 119
R + P G+ P G R PG PGP PG PG GA + E+
Sbjct: 564 GRPGDAGPQGKVGPSGAPGEDGR---PGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK 620
Query: 120 AAP 122
P
Sbjct: 621 GLP 623
Score = 42.0 bits (97), Expect = 0.003
Identities = 42/120 (35%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLG-PHAQ 63
GPS A PGP A G P R G G G S EPG+ G P A
Sbjct: 963 GPSGAEGPPGPQGLAGQRGIVGLPGQRGER---------GFPGLPGPSGEPGKQGAPGAS 1013
Query: 64 LTRVPRSP--PAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERAA 121
R P P P G P G R+ PGA GP PG DGA R E A
Sbjct: 1014 GDRGPPGPVGPPGLTGPAGEPGREG---SPGADGP-------PGRDGAAGVKGDRGETGA 1063
Score = 40.4 bits (93), Expect = 0.010
Identities = 38/129 (29%), Positives = 46/129 (35%), Gaps = 33/129 (25%)
Query: 1 MAHRGPSRASKGPGPTARAPSPG--------APPPPRSPRSRPLLLLLLLLGACGAAGRS 52
M RGP + PGP +PG P PR P P G G G +
Sbjct: 206 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPP--------GKPGDDGEA 257
Query: 53 PEPGRLGPHAQLTRVPRSPPAGRAEPG-----------GGEDRQARGTEPGAPGPSPGPA 101
+PG+ G R P P R PG G E GAPG G +
Sbjct: 258 GKPGKAG-----ERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK-GES 311
Query: 102 PGPGEDGAP 110
PGE+G+P
Sbjct: 312 GSPGENGSP 320
Score = 40.0 bits (92), Expect = 0.013
Identities = 37/118 (31%), Positives = 44/118 (37%), Gaps = 21/118 (17%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GP+ A+ G + P P PP P P P GA GA G + G GP
Sbjct: 336 GPAGAAGARGNDGQ-PGPAGPPGPVGPAGGPGFP-----GAPGAKGEAGPTGARGPEG-- 387
Query: 65 TRVPRSPPAGRAEPGGGEDRQARGTE--------PGAPGPS-----PGPAPGPGEDGA 109
+ PR P PG GT+ GAPG + PGP PG GA
Sbjct: 388 AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGA 445
Score = 40.0 bits (92), Expect = 0.013
Identities = 40/129 (31%), Positives = 49/129 (37%), Gaps = 11/129 (8%)
Query: 5 GPSRASKGPG----PTAR--APSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRL 58
GP+ AS PG P A+ A +PG P P R G G G++ EPG
Sbjct: 402 GPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIA 461
Query: 59 GPHAQLTRVPRSPPAG---RAEPGGGEDRQARGTEPGAPGP--SPGPAPGPGEDGAPAAG 113
G + PAG P G E ++ EPG GP PG PG G P
Sbjct: 462 GFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQD 521
Query: 114 YRRWERAAP 122
+ AP
Sbjct: 522 GLAGPKGAP 530
Score = 39.7 bits (91), Expect = 0.017
Identities = 37/128 (28%), Positives = 45/128 (35%), Gaps = 41/128 (32%)
Query: 14 GPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP-------HAQLTR 66
G T +PGAP PP SP G G G E G GP A+ +
Sbjct: 1059 GETGAVGAPGAPGPPGSPGP---------AGPTGKQGDRGEAGAQGPMGPSGPAGARGIQ 1109
Query: 67 VPRSPPAGRAEPGGGEDRQARGTE--------PGAPGPS-----------------PGPA 101
P+ P + E G +R +G PG PGPS PGP
Sbjct: 1110 GPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV 1169
Query: 102 PGPGEDGA 109
G+DGA
Sbjct: 1170 GPSGKDGA 1177
Score = 37.0 bits (84), Expect = 0.11
Identities = 42/150 (28%), Positives = 46/150 (30%), Gaps = 37/150 (24%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRS----RPLLLLLLLLGACGAAGRSPEPGRLGP 60
GP PG P PP P+ P R GA G GR EPG G
Sbjct: 101 GPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGN 160
Query: 61 HAQLTRVPRSPPAGRAEPG----------GGEDRQARGTE-------------PGAPGPS 97
P PP PG GG D +A G + G PGP+
Sbjct: 161 PG-----PPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPA 215
Query: 98 PGPAP-----GPGEDGAPAAGYRRWERAAP 122
P P PGE G P R P
Sbjct: 216 GAPGPQGFQGNPGEPGEPGVSGPMGPRGPP 245
Score = 37.0 bits (84), Expect = 0.11
Identities = 38/118 (32%), Positives = 44/118 (37%), Gaps = 32/118 (27%)
Query: 17 ARAPSPGAP---PPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPA 73
A AP P P P P+ P + G GA G PG G RV PP
Sbjct: 860 AGAPGPQGPSGAPGPQGPTG--------VTGPKGARGAQGPPGATGFPGAAGRV--GPPG 909
Query: 74 GRAEPG-------GGED--RQARGT--------EPGAPGPS--PGPAPGPGEDGAPAA 112
PG G+D + ARG EPG GP+ PG PG+DG A
Sbjct: 910 SNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGA 967
Score = 35.0 bits (79), Expect = 0.41
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 43 LGACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAP 102
+G G AG + E G +GP PAG A G + E G PGP+ G A
Sbjct: 791 IGPPGPAGANGEKGEVGPPG---------PAGSAGARGAPGERG---ETGPPGPA-GFAG 837
Query: 103 GPGEDGAPAA 112
PG DG P A
Sbjct: 838 PPGADGQPGA 847
Score = 34.3 bits (77), Expect = 0.71
Identities = 29/103 (28%), Positives = 33/103 (32%), Gaps = 17/103 (16%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGP A PGA P + G G AG+ + G GP P
Sbjct: 830 PGPAGFAGPPGADGQPGAK------------GEQGEAGQKGDAGAPGPQGPSGAPGPQGP 877
Query: 73 AGRAEPGGGEDRQARGTEPGAPGPS-----PGPAPGPGEDGAP 110
G P G Q G PG + PG PG G P
Sbjct: 878 TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 920
Score = 33.9 bits (76), Expect = 0.92
Identities = 33/105 (31%), Positives = 38/105 (36%), Gaps = 31/105 (29%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGP G PP G+ GA G E G GP P
Sbjct: 794 PGPAGANGEKGEVGPPGPA------------GSAGARGAPGERGETGPPG---------P 832
Query: 73 AGRAEPGG--------GEDRQA-RGTEPGAPGPSPGPAPGPGEDG 108
AG A P G GE +A + + GAPGP GP+ PG G
Sbjct: 833 AGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ-GPSGAPGPQG 876
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 48.5 bits (114), Expect = 4e-05
Identities = 42/134 (31%), Positives = 50/134 (37%), Gaps = 36/134 (26%)
Query: 4 RGPSRASKGPGPTARAPSPGA-----PPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRL 58
+GP A+ PG R PG+ PP P P + G GA G S PGR
Sbjct: 821 QGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKD--------GPKGARGDSGPPGRA 872
Query: 59 GPHAQLTRVPRSPPAGRAEPGGGEDRQARGT--------------------EPGAPGPSP 98
G + P PP + EPG A G E G PG P
Sbjct: 873 GEPG--LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG-LP 929
Query: 99 GPAPGPGEDGAPAA 112
GP+ PG+ GAP A
Sbjct: 930 GPSGEPGKQGAPGA 943
Score = 47.0 bits (110), Expect = 1e-04
Identities = 43/138 (31%), Positives = 48/138 (34%), Gaps = 24/138 (17%)
Query: 4 RGPSRASKGPGPTARAPSPGAP-----PPPRSPRSRPLL---LLLLLLGA----CGAAGR 51
RG PGP R PG P P P P P L + G G A
Sbjct: 68 RGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQL 127
Query: 52 SPEPGRLGPHAQLTRVPRSPP--AGRAEPGGGEDRQARGTEPGAPGPS-----PGPAPGP 104
G +GP PR PP AG P G + EPG GP PGP P
Sbjct: 128 GVMQGPMGPMG-----PRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKP 182
Query: 105 GEDGAPAAGYRRWERAAP 122
G+DG + ER P
Sbjct: 183 GDDGEAGKPGKAGERGPP 200
Score = 46.6 bits (109), Expect = 1e-04
Identities = 44/137 (32%), Positives = 49/137 (35%), Gaps = 27/137 (19%)
Query: 1 MAHRGPSRASKGPGPTARAPSPG-----APPPPRSPRSRPLLLLLLLL------------ 43
M RGP PG A PG PP P+ R P L +
Sbjct: 170 MGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGA 229
Query: 44 ----GACGAAGRSPEPGRLGPHAQLTRVPRSPPA--GRAEPGGGEDRQARGTEPGAPGP- 96
GA G G S PG G + PR P GR P G + +PG GP
Sbjct: 230 KGEAGAPGVKGESGSPGENGSPGPMG--PRGLPGERGRTGPAGAAGARGNDGQPGPAGPP 287
Query: 97 -SPGPAPGPGEDGAPAA 112
GPA GPG GAP A
Sbjct: 288 GPVGPAGGPGFPGAPGA 304
Score = 46.2 bits (108), Expect = 2e-04
Identities = 41/113 (36%), Positives = 48/113 (42%), Gaps = 21/113 (18%)
Query: 3 HRGPSRASKGPGPTARAPSPGAPPP--PRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP 60
HRG + PGP + GA P P PR P + G G G + PG +GP
Sbjct: 1063 HRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV-----GPSGKDGANGIPGPIGP 1117
Query: 61 HAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAG 113
R + PAG PG PG PGP PGP PGPG D + AG
Sbjct: 1118 PGPRGRSGETGPAG--PPGN----------PGPPGP-PGP-PGPGIDMSAFAG 1156
Score = 45.8 bits (107), Expect = 2e-04
Identities = 44/130 (33%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 5 GPS--RASKG-PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPH 61
GP+ R +G PGP+ PG P PP +P G G G + PG +GP
Sbjct: 579 GPAGERGEQGAPGPSGFQGLPGPPGPP-GEGGKP--------GDQGVPGEAGAPGLVGPR 629
Query: 62 AQLTRVPRSPPAGRAEPGGGEDRQARGTE--PGAPGP--SPGPAPGPGEDGAPAAGYRRW 117
+ R P R PG + RG PG GP + GPA PG G P
Sbjct: 630 GE-----RGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPG 684
Query: 118 ERAAPLAGVA 127
ER A AG+A
Sbjct: 685 ERGA--AGIA 692
Score = 45.4 bits (106), Expect = 3e-04
Identities = 38/123 (30%), Positives = 48/123 (39%), Gaps = 16/123 (13%)
Query: 5 GPSRASKGPGPTARAPSPG--APPPPRSPRSRPLLLLLL-LLGACGAAGRSPEPGRLGPH 61
G + PG + SPG P P PR P GA GA G +PG GP
Sbjct: 228 GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPP 287
Query: 62 AQLTRV-----PRSP-------PAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGA 109
+ P +P P G P G + + PG+PGP+ G + PG DG
Sbjct: 288 GPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPA-GASGNPGTDGI 346
Query: 110 PAA 112
P A
Sbjct: 347 PGA 349
Score = 44.7 bits (104), Expect = 5e-04
Identities = 40/127 (31%), Positives = 43/127 (33%), Gaps = 29/127 (22%)
Query: 1 MAHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP 60
M GP A+ PG PGAP G G G+ E G GP
Sbjct: 533 MGFPGPKGANGEPGKAGEKGLPGAP------------------GLRGLPGKDGETGAAGP 574
Query: 61 HAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGP-----SPGPAPGPGEDGAPAAGYR 115
P P R E G +G PG PGP PG PGE GAP
Sbjct: 575 PG-----PAGPAGERGEQGAPGPSGFQGL-PGPPGPPGEGGKPGDQGVPGEAGAPGLVGP 628
Query: 116 RWERAAP 122
R ER P
Sbjct: 629 RGERGFP 635
Score = 43.9 bits (102), Expect = 9e-04
Identities = 38/111 (34%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHA- 62
RG PGP + +PG P + S GA G AG PG GP
Sbjct: 323 RGEPGTPGSPGPAGASGNPGTDGIPGAKGSA---------GAPGIAGAPGFPGPRGPPGP 373
Query: 63 QLTRVPRSPPAGRAEPG--GGEDRQARGTEPGAPGP--SPGPAPGPGEDGA 109
Q P P EPG G + Q EPG GP +PGPA G+ GA
Sbjct: 374 QGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGA 424
Score = 42.4 bits (98), Expect = 0.003
Identities = 37/123 (30%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GP PG G P +P R L GA G GR EPG G
Sbjct: 435 GPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLT 494
Query: 65 TRVPRSPPAGRAEPGGGEDRQARGTEPGAPGP-----SPGPAPGPGEDGAPAAGYRRWER 119
R + P G+ P G R PG PGP PG PG GA + E+
Sbjct: 495 GRPGDAGPQGKVGPSGAPGEDGR---PGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEK 551
Query: 120 AAP 122
P
Sbjct: 552 GLP 554
Score = 42.0 bits (97), Expect = 0.003
Identities = 42/120 (35%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLG-PHAQ 63
GPS A PGP A G P R G G G S EPG+ G P A
Sbjct: 894 GPSGAEGPPGPQGLAGQRGIVGLPGQRGER---------GFPGLPGPSGEPGKQGAPGAS 944
Query: 64 LTRVPRSP--PAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERAA 121
R P P P G P G R+ PGA GP PG DGA R E A
Sbjct: 945 GDRGPPGPVGPPGLTGPAGEPGREG---SPGADGP-------PGRDGAAGVKGDRGETGA 994
Score = 40.4 bits (93), Expect = 0.010
Identities = 38/129 (29%), Positives = 46/129 (35%), Gaps = 33/129 (25%)
Query: 1 MAHRGPSRASKGPGPTARAPSPG--------APPPPRSPRSRPLLLLLLLLGACGAAGRS 52
M RGP + PGP +PG P PR P P G G G +
Sbjct: 137 MGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPP--------GKPGDDGEA 188
Query: 53 PEPGRLGPHAQLTRVPRSPPAGRAEPG-----------GGEDRQARGTEPGAPGPSPGPA 101
+PG+ G R P P R PG G E GAPG G +
Sbjct: 189 GKPGKAG-----ERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK-GES 242
Query: 102 PGPGEDGAP 110
PGE+G+P
Sbjct: 243 GSPGENGSP 251
Score = 40.0 bits (92), Expect = 0.013
Identities = 37/118 (31%), Positives = 44/118 (37%), Gaps = 21/118 (17%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GP+ A+ G + P P PP P P P GA GA G + G GP
Sbjct: 267 GPAGAAGARGNDGQ-PGPAGPPGPVGPAGGPGFP-----GAPGAKGEAGPTGARGPEG-- 318
Query: 65 TRVPRSPPAGRAEPGGGEDRQARGTE--------PGAPGPS-----PGPAPGPGEDGA 109
+ PR P PG GT+ GAPG + PGP PG GA
Sbjct: 319 AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGA 376
Score = 40.0 bits (92), Expect = 0.013
Identities = 40/129 (31%), Positives = 49/129 (37%), Gaps = 11/129 (8%)
Query: 5 GPSRASKGPG----PTAR--APSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRL 58
GP+ AS PG P A+ A +PG P P R G G G++ EPG
Sbjct: 333 GPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIA 392
Query: 59 GPHAQLTRVPRSPPAG---RAEPGGGEDRQARGTEPGAPGP--SPGPAPGPGEDGAPAAG 113
G + PAG P G E ++ EPG GP PG PG G P
Sbjct: 393 GFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQD 452
Query: 114 YRRWERAAP 122
+ AP
Sbjct: 453 GLAGPKGAP 461
Score = 39.7 bits (91), Expect = 0.017
Identities = 37/128 (28%), Positives = 45/128 (35%), Gaps = 41/128 (32%)
Query: 14 GPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP-------HAQLTR 66
G T +PGAP PP SP G G G E G GP A+ +
Sbjct: 990 GETGAVGAPGAPGPPGSPGP---------AGPTGKQGDRGEAGAQGPMGPSGPAGARGIQ 1040
Query: 67 VPRSPPAGRAEPGGGEDRQARGTE--------PGAPGPS-----------------PGPA 101
P+ P + E G +R +G PG PGPS PGP
Sbjct: 1041 GPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV 1100
Query: 102 PGPGEDGA 109
G+DGA
Sbjct: 1101 GPSGKDGA 1108
Score = 37.0 bits (84), Expect = 0.11
Identities = 42/150 (28%), Positives = 46/150 (30%), Gaps = 37/150 (24%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRS----RPLLLLLLLLGACGAAGRSPEPGRLGP 60
GP PG P PP P+ P R GA G GR EPG G
Sbjct: 32 GPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGN 91
Query: 61 HAQLTRVPRSPPAGRAEPG----------GGEDRQARGTE-------------PGAPGPS 97
P PP PG GG D +A G + G PGP+
Sbjct: 92 PG-----PPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPA 146
Query: 98 PGPAP-----GPGEDGAPAAGYRRWERAAP 122
P P PGE G P R P
Sbjct: 147 GAPGPQGFQGNPGEPGEPGVSGPMGPRGPP 176
Score = 37.0 bits (84), Expect = 0.11
Identities = 38/118 (32%), Positives = 44/118 (37%), Gaps = 32/118 (27%)
Query: 17 ARAPSPGAP---PPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPA 73
A AP P P P P+ P + G GA G PG G RV PP
Sbjct: 791 AGAPGPQGPSGAPGPQGPTG--------VTGPKGARGAQGPPGATGFPGAAGRV--GPPG 840
Query: 74 GRAEPG-------GGED--RQARGT--------EPGAPGPS--PGPAPGPGEDGAPAA 112
PG G+D + ARG EPG GP+ PG PG+DG A
Sbjct: 841 SNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGA 898
Score = 35.0 bits (79), Expect = 0.41
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 43 LGACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAP 102
+G G AG + E G +GP PAG A G + E G PGP+ G A
Sbjct: 722 IGPPGPAGANGEKGEVGPPG---------PAGSAGARGAPGERG---ETGPPGPA-GFAG 768
Query: 103 GPGEDGAPAA 112
PG DG P A
Sbjct: 769 PPGADGQPGA 778
Score = 34.3 bits (77), Expect = 0.71
Identities = 29/103 (28%), Positives = 33/103 (32%), Gaps = 17/103 (16%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGP A PGA P + G G AG+ + G GP P
Sbjct: 761 PGPAGFAGPPGADGQPGAK------------GEQGEAGQKGDAGAPGPQGPSGAPGPQGP 808
Query: 73 AGRAEPGGGEDRQARGTEPGAPGPS-----PGPAPGPGEDGAP 110
G P G Q G PG + PG PG G P
Sbjct: 809 TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 851
Score = 33.9 bits (76), Expect = 0.92
Identities = 33/105 (31%), Positives = 38/105 (36%), Gaps = 31/105 (29%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGP G PP G+ GA G E G GP P
Sbjct: 725 PGPAGANGEKGEVGPPGPA------------GSAGARGAPGERGETGPPG---------P 763
Query: 73 AGRAEPGG--------GEDRQA-RGTEPGAPGPSPGPAPGPGEDG 108
AG A P G GE +A + + GAPGP GP+ PG G
Sbjct: 764 AGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQ-GPSGAPGPQG 807
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 48.5 bits (114), Expect = 4e-05
Identities = 41/113 (36%), Positives = 43/113 (38%), Gaps = 27/113 (23%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GP PGP PGA P GA G GR PG +GP
Sbjct: 1255 GPKGDCGKPGPPGSTGRPGAEGEP---------------GAMGPQGRPGPPGHVGPPGP- 1298
Query: 65 TRVPRSP-PAGRAEPGGGEDRQARGTE-----PGAPGPS--PGPAPGPGEDGA 109
P P PAG + G DR A G PG PGP PGP PG DGA
Sbjct: 1299 ---PGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGA 1348
Score = 40.4 bits (93), Expect = 0.010
Identities = 39/134 (29%), Positives = 48/134 (35%), Gaps = 51/134 (38%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQ 63
RG + PGP PG P PP P G GAAG+ PG+ G +
Sbjct: 1322 RGLAGLPGQPGP------PGHPGPPGEP------------GTDGAAGKEGPPGKQGFYG- 1362
Query: 64 LTRVPRSPPAGRAEPGG-GEDRQA----RGTEPGAPGPS--------------------P 98
PP + +PG G+ QA R PG PG S P
Sbjct: 1363 -------PPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAP 1415
Query: 99 GPAPGPGEDGAPAA 112
GP+ PG G P +
Sbjct: 1416 GPSGSPGLPGVPGS 1429
Score = 40.0 bits (92), Expect = 0.013
Identities = 41/145 (28%), Positives = 50/145 (34%), Gaps = 31/145 (21%)
Query: 4 RGPSRASKGPGPTA---------------RAPSPG--APPPPRSPRSRPLLLLLLLLGAC 46
RGPS PGP + PG P P P L+G
Sbjct: 1191 RGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPG--------LMGPP 1242
Query: 47 GAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTE--PGAPG--PSPGPAP 102
G G++ PG GP + PP PG + A G + PG PG PGP
Sbjct: 1243 GFKGKTGHPGLPGPKGDCGK--PGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPG 1300
Query: 103 GPGEDGAPAAGYRRWERAAPLAGVA 127
PG G A G + A G+A
Sbjct: 1301 QPGPAGISAVGLKGDRGATGERGLA 1325
Score = 39.3 bits (90), Expect = 0.022
Identities = 36/119 (30%), Positives = 43/119 (36%), Gaps = 28/119 (23%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQ 63
RGP S G PG P PP P G G+ PG GP A+
Sbjct: 1140 RGPQGNSGEKGDQGFQGQPGFPGPPGPP---------------GFPGKVGSPGPPGPQAE 1184
Query: 64 L--------TRVPRSP----PAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAP 110
+ +P SP P G P G + + +PG G PGPA PG G P
Sbjct: 1185 KGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRG-DPGPAGPPGLMGPP 1242
Score = 37.0 bits (84), Expect = 0.11
Identities = 41/126 (32%), Positives = 45/126 (35%), Gaps = 35/126 (27%)
Query: 7 SRASKG-PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPE----------- 54
S KG PGP PG PP P PR G G G S E
Sbjct: 1112 SAGEKGEPGPPGSEGLPG-PPGPAGPR-----------GERGPQGNSGEKGDQGFQGQPG 1159
Query: 55 -PGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGP--APGP------- 104
PG GP +V P G G E + PG+PGP PGP GP
Sbjct: 1160 FPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGP-PGPPGIQGPAGLDGLD 1218
Query: 105 GEDGAP 110
G+DG P
Sbjct: 1219 GKDGKP 1224
Score = 36.2 bits (82), Expect = 0.19
Identities = 32/103 (31%), Positives = 39/103 (37%), Gaps = 8/103 (7%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLL---LLLLLLGACGAAGRSPEPGRLGPHAQLTRVPR 69
PGP + +PG P P SP + L G G G E G +G
Sbjct: 1475 PGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLP 1534
Query: 70 SPPAGRAEPG----GGEDRQARGTEPGAPGPSPGPAPGPGEDG 108
PP + PG G + PG PGP PGP PG+ G
Sbjct: 1535 GPPGPQGPPGYGKMGATGPMGQQGIPGIPGP-PGPMGQPGKAG 1576
Score = 35.0 bits (79), Expect = 0.41
Identities = 34/112 (30%), Positives = 37/112 (33%), Gaps = 14/112 (12%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GP PGP PG P SP L L G G G + + G GP Q
Sbjct: 1036 GPPGMRGSPGPPGPIGPPGFPGAVGSPG------LPGLQGERGLTGLTGDKGEPGPPGQP 1089
Query: 65 TRVPRSPPAGRAEPGGGEDRQARGTEPGAPGP--------SPGPAPGPGEDG 108
+ P G G E G PGP PGPA GE G
Sbjct: 1090 GYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERG 1141
Score = 33.9 bits (76), Expect = 0.92
Identities = 35/118 (29%), Positives = 39/118 (33%), Gaps = 20/118 (16%)
Query: 7 SRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTR 66
+R G SPG P PP P R G G G PG GP
Sbjct: 1005 ARGDNSEGDPGCVGSPGLPGPPGLPGQR---------GEEGPPGMRGSPGPPGPIG---- 1051
Query: 67 VPRSPPAGRAEPGGGEDRQARGT-----EPGAPGPSPGPAPGPGEDGAPAAGYRRWER 119
P P PG + RG + G PGP PG PG G P + ER
Sbjct: 1052 -PPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGP-PGQPGYPGATGPPGLPGIKGER 1107
Score = 33.5 bits (75), Expect = 1.2
Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 47 GAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGE 106
G G+ +PG +GP L P PP PG G GT PG PG PGP G
Sbjct: 429 GPKGQKGDPGFVGPEG-LAGEP-GPPGLPGPPGIG----LPGT-PGDPGGPPGPKGDKGS 481
Query: 107 DGAP 110
G P
Sbjct: 482 SGIP 485
Score = 32.7 bits (73), Expect = 2.1
Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 14 GPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPA 73
GP R PG PP P +P + +G G G + E G G Q P
Sbjct: 1282 GPQGRPGPPGHVGPP-GPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPP 1340
Query: 74 GRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDG 108
G G ++ + G GP PGP PG G
Sbjct: 1341 GEPGTDGAAGKEGPPGKQGFYGP-PGPKGDPGAAG 1374
Score = 31.6 bits (70), Expect = 4.6
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 44 GACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPG--GGEDRQARGTEPGAPGPSPGPA 101
G G G +PGR G ++ + P + +PG G E PG PGP
Sbjct: 405 GDGGIKGVPGKPGRDGRPGEICVI--GPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGL 462
Query: 102 PG-PGEDGAP 110
PG PG+ G P
Sbjct: 463 PGTPGDPGGP 472
Score = 31.2 bits (69), Expect = 6.0
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 5 GPSRASKGPGPTARAPSPGA------PPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRL 58
GP+ + PGP A GA P P S + ++ L G G G PG
Sbjct: 608 GPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFG 667
Query: 59 GPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAP 110
P Q G+A G + ++ PG PG +PG PG G P
Sbjct: 668 LPGKQ----------GKAGERGLKGQKGDAGNPGDPG-TPGTTGRPGLSGEP 708
Score = 31.2 bits (69), Expect = 6.0
Identities = 40/113 (35%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSP-----EPGRLG 59
GP + +GP R PG P P P + L + G G GR EPG G
Sbjct: 745 GP-KGEQGPEGVGR---PGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPG 800
Query: 60 -PHAQLTRVPRSPPAGRAEPGGGEDRQARG-TEP-GAPGPS-PGPAPGPGEDG 108
P Q PR PP E G +G T P G PG S GP PG DG
Sbjct: 801 LPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGP---PGRDG 850
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 47.8 bits (112), Expect = 6e-05
Identities = 36/111 (32%), Positives = 41/111 (36%), Gaps = 18/111 (16%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGP A SPG PPPP SP P SP R P+ L P + P
Sbjct: 763 PGPAPAAASPG-PPPPASPPGAP---------------ASPRAPRTSPYGGLPAAPLAGP 806
Query: 73 AGRAEPGGGEDRQARGTEPGAPGPSPGPAPG--PGEDGAPAAGYRRWERAA 121
A A R ++P P +PGPA P P G RAA
Sbjct: 807 ALPARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAA 857
Score = 47.4 bits (111), Expect = 8e-05
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GP+ A+ PGP A PGAP PR+PR+ P G +P G P +L
Sbjct: 764 GPAPAAASPGPPPPASPPGAPASPRAPRTSPY----------GGLPAAPLAGPALPARRL 813
Query: 65 TRVPRSPPAGRAEPGGGEDRQARGTEPGAP-----GPSP-----GPAPGPGEDGAPAA 112
+R R A + G A T P + GP+P P+P + +P A
Sbjct: 814 SRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSASPGA 871
Score = 43.5 bits (101), Expect = 0.001
Identities = 39/132 (29%), Positives = 50/132 (37%), Gaps = 17/132 (12%)
Query: 6 PSRASKGPGPTARAPSPGAPPPPRSPRSR-----------PLLLLLLLLGACGAAGR--S 52
P + P P A P PG PP PR+ P L +CG G +
Sbjct: 31 PQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPPEAADEGGPRGRLRSRDSSCGRPGTPGA 90
Query: 53 PEPGRLGPHAQLTR-VPRSPPAGRAEPGGGE--DRQARGTEPGAPGPSPGPAPGPGEDGA 109
+ P+ + R P+ PAG P G RG G P P PGPA G + A
Sbjct: 91 ASTAKGSPNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAASG-PAPGPGPAEEAGSEEA 149
Query: 110 PAAGYRRWERAA 121
AG R +A+
Sbjct: 150 GPAGEPRGSQAS 161
Score = 38.5 bits (88), Expect = 0.037
Identities = 42/144 (29%), Positives = 53/144 (36%), Gaps = 27/144 (18%)
Query: 2 AHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPH 61
A G R + PG T AP P PPPP P+ +P P P P
Sbjct: 3 ARGGGGRPGESPGATP-APGPPPPPPPAPPQQQP----------------PPPPPPAPPP 45
Query: 62 AQLTRVPRSPPAGRAEP------GGGEDR-QARGTEPGAPGPSPGPAPGPGEDGAPAAGY 114
P+ PP A P GG R ++R + G PG +PG A G+P
Sbjct: 46 GPGPAPPQHPPRAEALPPEAADEGGPRGRLRSRDSSCGRPG-TPGAA--STAKGSPNGEC 102
Query: 115 RRWERAAPLAGVASRAQVSLISTS 138
R E AG A+ +S S
Sbjct: 103 GRGEPQCSPAGPEGPARGPKVSFS 126
Score = 33.9 bits (76), Expect = 0.92
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 25 PPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLT-RVPRSPPAGRAEPGGGED 83
PPPP P+ + L A + P +GP A + R+ R PP G A
Sbjct: 715 PPPPPPPQVTSAIATLQQAAAMSFCPQVARP-LVGPLALGSPRLVRRPPPGPAPAAASPG 773
Query: 84 RQARGTEPGAPGPSPGPAPGP--GEDGAPAAG----YRRWERAA 121
+ PGAP P P G AP AG RR RA+
Sbjct: 774 PPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRAS 817
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 47.8 bits (112), Expect = 6e-05
Identities = 46/146 (31%), Positives = 57/146 (39%), Gaps = 6/146 (4%)
Query: 1 MAHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP 60
+A R P+RAS G G T+ P R R ++ A A GRSP P G
Sbjct: 117 LAQRSPARASPGGGFTSAEGKRKTRPAGRGG-GRTRRVVAAPESAAAAPGRSPSPADPGS 175
Query: 61 HAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERA 120
+ TRVPR A R+ + R A PGAP S A P PA+ RR
Sbjct: 176 TSSATRVPR---ARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPAS--RRPGAP 230
Query: 121 APLAGVASRAQVSLISTSFVLKGDAT 146
L+ R + S GD T
Sbjct: 231 RLLSRTRQRELGGSAAPSVAFSGDVT 256
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 47.8 bits (112), Expect = 6e-05
Identities = 46/146 (31%), Positives = 57/146 (39%), Gaps = 6/146 (4%)
Query: 1 MAHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP 60
+A R P+RAS G G T+ P R R ++ A A GRSP P G
Sbjct: 117 LAQRSPARASPGGGFTSAEGKRKTRPAGRGG-GRTRRVVAAPESAAAAPGRSPSPADPGS 175
Query: 61 HAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERA 120
+ TRVPR A R+ + R A PGAP S A P PA+ RR
Sbjct: 176 TSSATRVPR---ARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPAS--RRPGAP 230
Query: 121 APLAGVASRAQVSLISTSFVLKGDAT 146
L+ R + S GD T
Sbjct: 231 RLLSRTRQRELGGSAAPSVAFSGDVT 256
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 47.8 bits (112), Expect = 6e-05
Identities = 45/137 (32%), Positives = 54/137 (39%), Gaps = 23/137 (16%)
Query: 6 PSRASK--GPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGR-LGPHA 62
P R K GP P S G PP P P +P G + G P PG+ GP
Sbjct: 72 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQP------PQGGNQSQGPPPRPGKPEGPPP 125
Query: 63 QLTRVPRSPP--AGRAE---PGGGEDRQARGTEPGAP-GPSP-------GPAPGPGE-DG 108
Q + PP G+ E P GG Q PG P GP P GP P PG+ +G
Sbjct: 126 QGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEG 185
Query: 109 APAAGYRRWERAAPLAG 125
P G + + P G
Sbjct: 186 PPPQGGNQSQGPPPRPG 202
Score = 46.2 bits (108), Expect = 2e-04
Identities = 43/131 (32%), Positives = 51/131 (38%), Gaps = 26/131 (19%)
Query: 15 PTARAPSPG-----APPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGR-LGPHAQLTRVP 68
P R P G PPPP P RP G + G P PG+ GP Q
Sbjct: 36 PEGRRPQGGNQPQRTPPPPGKPEGRP------PQGGNQSQGPPPRPGKPEGPPPQGGNQS 89
Query: 69 RSPP--AGRAE---PGGGEDRQARGTEPGAP-GPSP-------GPAPGPGE-DGAPAAGY 114
+ PP G+ E P GG Q PG P GP P GP P PG+ +G P G
Sbjct: 90 QGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 149
Query: 115 RRWERAAPLAG 125
+ + P G
Sbjct: 150 NQSQGPPPRPG 160
Score = 44.7 bits (104), Expect = 5e-04
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 11 KGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRL-GPHAQLTRVPR 69
+GP P S G PP P P P G + G P PG+ GP +Q P+
Sbjct: 184 EGPPPQGGNQSQGPPPRPGKPEGPPPQ------GGNQSQGPPPRPGKPEGPPSQGGNKPQ 237
Query: 70 SPPAGRAEPGGGEDRQA----RGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERAAPLAG 125
PP +P G ++ R PG P P P P + P AG + P G
Sbjct: 238 GPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGG 297
Score = 42.4 bits (98), Expect = 0.003
Identities = 39/121 (32%), Positives = 44/121 (36%), Gaps = 22/121 (18%)
Query: 6 PSRASK--GPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRL-GPHA 62
P R K GP P S G PP P P P G + G P PG+ GP
Sbjct: 135 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQ------GGNQSQGPPPHPGKPEGPPP 188
Query: 63 QLTRVPRSPPA--GRAE---PGGGEDRQARGTEPGAPGPSP--------GPAPGPGEDGA 109
Q + PP G+ E P GG Q PG P P GP P PG+
Sbjct: 189 QGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQG 248
Query: 110 P 110
P
Sbjct: 249 P 249
Score = 41.6 bits (96), Expect = 0.004
Identities = 45/141 (31%), Positives = 53/141 (37%), Gaps = 27/141 (19%)
Query: 6 PSRASKGPG-PTARAP-----SPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGR-L 58
P R PG P R P S G PP P P P G + G P PG+
Sbjct: 47 PQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPP------PQGGNQSQGPPPRPGKPE 100
Query: 59 GPHAQLTRVPRSPP--AGRAE---PGGGEDRQARGTEPGAP-GPSP-------GPAPGPG 105
G Q + PP G+ E P GG Q PG P GP P GP P PG
Sbjct: 101 GQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 160
Query: 106 E-DGAPAAGYRRWERAAPLAG 125
+ +G P G + + P G
Sbjct: 161 KPEGPPPQGGNQSQGPPPHPG 181
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 47.4 bits (111), Expect = 8e-05
Identities = 40/116 (34%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPL-----LLLLLLLGACGAAGRSPEPGR- 57
R +RA + PG R P AP P S R R L L+ L++ + AG++ EP
Sbjct: 545 RPSARAWELPGGRTRPPPHAAPDGPTSGRQRSLEQLDELITDLVIDSRPTAGQASEPAAD 604
Query: 58 -LGPHAQLTRVPRSPPAGRAEPGGGEDRQ-----ARGTEPGAPGPSPGPAPGPGED 107
LGP QL R+ S PAG P R EP APG + +P P D
Sbjct: 605 CLGP--QLRRLLDSRPAGSGAPALAPPRSPPASAGSAEEPAAPGEAADASPEPSAD 658
>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 47.0 bits (110), Expect = 1e-04
Identities = 40/126 (31%), Positives = 48/126 (38%), Gaps = 28/126 (22%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
P PT RAP G PP P P A SP P R P PP
Sbjct: 23 PTPTRRAPLIGCPPSPARP----------------APSASPSPSRAAG-------PFLPP 59
Query: 73 AGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERAAPLAGVASRAQV 132
+ + +AR TEP P P GPG GA G R +RAA +A SRA
Sbjct: 60 SHASTSSRSPPPRARRTEPAVP---PSCGSGPGAAGALRMGLGRTQRAARVA--VSRALA 114
Query: 133 SLISTS 138
++ +
Sbjct: 115 GTVAAA 120
>gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo
sapiens]
Length = 179
Score = 47.0 bits (110), Expect = 1e-04
Identities = 40/126 (31%), Positives = 48/126 (38%), Gaps = 28/126 (22%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
P PT RAP G PP P P A SP P R P PP
Sbjct: 23 PTPTRRAPLIGCPPSPARP----------------APSASPSPSRAAG-------PFLPP 59
Query: 73 AGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERAAPLAGVASRAQV 132
+ + +AR TEP P P GPG GA G R +RAA +A SRA
Sbjct: 60 SHASTSSRSPPPRARRTEPAVP---PSCGSGPGAAGALRMGLGRTQRAARVA--VSRALA 114
Query: 133 SLISTS 138
++ +
Sbjct: 115 GTVAAA 120
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 47.0 bits (110), Expect = 1e-04
Identities = 37/105 (35%), Positives = 40/105 (38%), Gaps = 23/105 (21%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQ 63
RGP PGP PGAP P +P GA G G PG +G Q
Sbjct: 295 RGPKGPPGPPGPAGEPGKPGAPGKPGTP------------GADGLTGPDGSPGSIGSKGQ 342
Query: 64 LTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDG 108
+ P R PG G PG PGP PG A PGE G
Sbjct: 343 --KGEPGVPGSRGFPGRG--------IPGPPGP-PGTAGLPGELG 376
Score = 39.3 bits (90), Expect = 0.022
Identities = 36/89 (40%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 23 GAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLG-PHAQLTRVPRSPPAGRAEPGGG 81
GA PP + R + ++ G GA G EPG G P A + R PP G A P G
Sbjct: 460 GAQGPPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPP-GEAGPKG- 517
Query: 82 EDRQARGTE--PGAPGPSPGPAPGPGEDG 108
DR A G PG PGP G PG DG
Sbjct: 518 -DRGAEGARGIPGLPGPK-GDTGLPGVDG 544
Score = 38.9 bits (89), Expect = 0.029
Identities = 33/94 (35%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 22 PGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRA----E 77
PG P PP P + ++ G G G S E G G +L + P G A E
Sbjct: 651 PGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGE 710
Query: 78 PGGGEDRQARGTEPGAPGP--SPGPAPGPGEDGA 109
PG +RG PG GP PGP GE GA
Sbjct: 711 PGLRGPEGSRGL-PGVEGPRGPPGPRGVQGEQGA 743
Score = 34.3 bits (77), Expect = 0.71
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 55 PGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPS--PGPAPGPGEDGAPAA 112
PG GP P PP G DR +G PG PGP+ PG PG+ G P A
Sbjct: 271 PGEQGPPG-----PPGPPGVPGIDGIDGDRGPKGP-PGPPGPAGEPGKPGAPGKPGTPGA 324
Score = 34.3 bits (77), Expect = 0.71
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 42 LLGACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPA 101
L G G+AG EPG GP P G P G + Q PG GP PG A
Sbjct: 698 LPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQGP-PGRA 756
Query: 102 P 102
P
Sbjct: 757 P 757
Score = 33.1 bits (74), Expect = 1.6
Identities = 31/109 (28%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGP A G P P P ++ G G G + PG+ G + + P
Sbjct: 561 PGPPGDAGLQGLPGVPGIPGAK---------GVAGEKGSTGAPGKPGQMGNSGKPGQQGP 611
Query: 73 AGRAEPGGGEDRQ-ARGT-----EPGAPGP-----SPGPAPGPGEDGAP 110
G P G + +RG PG PG SPG PG G P
Sbjct: 612 PGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLP 660
Score = 32.7 bits (73), Expect = 2.1
Identities = 32/112 (28%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 14 GPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPA 73
G T PG P PP P + + G G G G GP L P
Sbjct: 787 GATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPP 846
Query: 74 GR------------AEPG-GGEDRQARGTEPGAPGPS--PGPAPGPGEDGAP 110
GR +PG R R E G PG + PG PG G P
Sbjct: 847 GRGPNGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPGPPGPPGLP 898
Score = 31.2 bits (69), Expect = 6.0
Identities = 36/105 (34%), Positives = 44/105 (41%), Gaps = 17/105 (16%)
Query: 7 SRASKG-PG-PTARA-PSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP--- 60
S+ KG PG P +R P G P PP P + L L +G G GR PG GP
Sbjct: 339 SKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGP 398
Query: 61 ------HAQLTRVPRSPPAGRAE----PGGGEDRQARGTEPGAPG 95
H P + P GR+ PG + A+G E G PG
Sbjct: 399 RGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKG-EIGEPG 442
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 47.0 bits (110), Expect = 1e-04
Identities = 37/105 (35%), Positives = 40/105 (38%), Gaps = 23/105 (21%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQ 63
RGP PGP PGAP P +P GA G G PG +G Q
Sbjct: 52 RGPKGPPGPPGPAGEPGKPGAPGKPGTP------------GADGLTGPDGSPGSIGSKGQ 99
Query: 64 LTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDG 108
+ P R PG G PG PGP PG A PGE G
Sbjct: 100 --KGEPGVPGSRGFPGRG--------IPGPPGP-PGTAGLPGELG 133
Score = 44.7 bits (104), Expect = 5e-04
Identities = 30/75 (40%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 40 LLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPS-- 97
LLLLG C A + PG GP P PP G DR +G PG PGP+
Sbjct: 13 LLLLGLCLCAAQRGPPGEQGPPG-----PPGPPGVPGIDGIDGDRGPKGP-PGPPGPAGE 66
Query: 98 PGPAPGPGEDGAPAA 112
PG PG+ G P A
Sbjct: 67 PGKPGAPGKPGTPGA 81
Score = 39.3 bits (90), Expect = 0.022
Identities = 36/89 (40%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 23 GAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLG-PHAQLTRVPRSPPAGRAEPGGG 81
GA PP + R + ++ G GA G EPG G P A + R PP G A P G
Sbjct: 217 GAQGPPGAQGLRGITGIVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRGPP-GEAGPKG- 274
Query: 82 EDRQARGTE--PGAPGPSPGPAPGPGEDG 108
DR A G PG PGP G PG DG
Sbjct: 275 -DRGAEGARGIPGLPGPK-GDTGLPGVDG 301
Score = 38.9 bits (89), Expect = 0.029
Identities = 33/94 (35%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 22 PGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRA----E 77
PG P PP P + ++ G G G S E G G +L + P G A E
Sbjct: 408 PGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGE 467
Query: 78 PGGGEDRQARGTEPGAPGP--SPGPAPGPGEDGA 109
PG +RG PG GP PGP GE GA
Sbjct: 468 PGLRGPEGSRGL-PGVEGPRGPPGPRGVQGEQGA 500
Score = 34.3 bits (77), Expect = 0.71
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 42 LLGACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPA 101
L G G+AG EPG GP P G P G + Q PG GP PG A
Sbjct: 455 LPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQGP-PGRA 513
Query: 102 P 102
P
Sbjct: 514 P 514
Score = 33.1 bits (74), Expect = 1.6
Identities = 31/109 (28%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPP 72
PGP A G P P P ++ G G G + PG+ G + + P
Sbjct: 318 PGPPGDAGLQGLPGVPGIPGAK---------GVAGEKGSTGAPGKPGQMGNSGKPGQQGP 368
Query: 73 AGRAEPGGGEDRQ-ARGT-----EPGAPGP-----SPGPAPGPGEDGAP 110
G P G + +RG PG PG SPG PG G P
Sbjct: 369 PGEVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLP 417
Score = 32.7 bits (73), Expect = 2.1
Identities = 32/112 (28%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 14 GPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPA 73
G T PG P PP P + + G G G G GP L P
Sbjct: 544 GATGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPP 603
Query: 74 GR------------AEPG-GGEDRQARGTEPGAPGPS--PGPAPGPGEDGAP 110
GR +PG R R E G PG + PG PG G P
Sbjct: 604 GRGPNGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPGPPGPPGLP 655
Score = 31.2 bits (69), Expect = 6.0
Identities = 36/105 (34%), Positives = 44/105 (41%), Gaps = 17/105 (16%)
Query: 7 SRASKG-PG-PTARA-PSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP--- 60
S+ KG PG P +R P G P PP P + L L +G G GR PG GP
Sbjct: 96 SKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGP 155
Query: 61 ------HAQLTRVPRSPPAGRAE----PGGGEDRQARGTEPGAPG 95
H P + P GR+ PG + A+G E G PG
Sbjct: 156 RGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKG-EIGEPG 199
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 46.6 bits (109), Expect = 1e-04
Identities = 44/142 (30%), Positives = 52/142 (36%), Gaps = 35/142 (24%)
Query: 4 RGPSRASKGPGPTARAPSPGA--PPPPRSPRSRPLLLL----------------LLLLGA 45
+GPS + PG PGA PP P P+ P L L G
Sbjct: 396 QGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQ 455
Query: 46 CGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPG-GGEDRQARGTEPGAPGPS------- 97
G G S PG GP + P+ P + EPG G + R EPG GP+
Sbjct: 456 PGLRGPSGIPGLQGPAGPIG--PQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPG 513
Query: 98 -------PGPAPGPGEDGAPAA 112
PGP PG GAP A
Sbjct: 514 SPGITGPPGPPGPPGPPGAPGA 535
Score = 45.4 bits (106), Expect = 3e-04
Identities = 39/104 (37%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRS--PEPGRLGPHAQLTRV-PR 69
PGP + P P PP P +P + L G G AG G+ GP +V P
Sbjct: 79 PGPPGK-PGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPP 137
Query: 70 SPPAGRAEPGGGEDRQARGT--EPGAPGPSPGPAPG-PGEDGAP 110
P R EPG D+ RG PG PGPS PG PG G P
Sbjct: 138 GQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVP 181
Score = 36.2 bits (82), Expect = 0.19
Identities = 39/119 (32%), Positives = 43/119 (36%), Gaps = 21/119 (17%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLL--LLGACGAAGRSPEPGRLGPHAQLTRV-PR 69
PG GAP PP P L L L GA G G S PG GP + V P+
Sbjct: 213 PGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPK 272
Query: 70 SPPA-------------GRAEPGGGEDRQARGTEPGAPGPS----PGPAPGPGEDGAPA 111
PP G P G + PG GP+ PG PGP D PA
Sbjct: 273 GPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPG-LPGPKGDRGPA 330
Score = 35.4 bits (80), Expect = 0.32
Identities = 44/151 (29%), Positives = 50/151 (33%), Gaps = 44/151 (29%)
Query: 5 GPSRASKG--PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHA 62
G SR K PG + PG P P R G G G PG GP
Sbjct: 118 GFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIR---------GDQGLRGPPGPPGLPGPSG 168
Query: 63 QLTRVPRSP--------------PAGRAEPGGGEDRQARGT----EPGAPG-PSPGPAPG 103
+P P P + EPG DR +G +PG PG P G APG
Sbjct: 169 --ITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPG 226
Query: 104 ------------PGEDGAPAAGYRRWERAAP 122
PG DG P A + E P
Sbjct: 227 PPGLPGPAGLGKPGLDGLPGAPGDKGESGPP 257
Score = 34.7 bits (78), Expect = 0.54
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 30 SPRSRPLLLLLLLL-----------GACGAAGRSP----EPGRLGPHAQLTRVPRSPPAG 74
+P S LLLLL+L+ GA GAAG +P +P + GP R +
Sbjct: 6 TPLSSLLLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGPVGPPFREGKGQYLE 65
Query: 75 RAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAG 113
P D + PG PGP P P PG G P G
Sbjct: 66 MPLPLLPMDLKGEPGPPGKPGPRGPPGP-PGFPGKPGMG 103
Score = 30.8 bits (68), Expect = 7.8
Identities = 46/143 (32%), Positives = 50/143 (34%), Gaps = 52/143 (36%)
Query: 4 RGPSRASKGPG----PTARAPS----PGAPPPP--RSPRSRPLLL--------------- 38
+GPS A PG P P+ PG P P R P P LL
Sbjct: 292 QGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQ 351
Query: 39 -LLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPG-- 95
L G G G + PGR GP P G A PGG PG PG
Sbjct: 352 GPQGLGGPPGLPGSAGLPGRRGPPG---------PKGEAGPGG---------PPGVPGIR 393
Query: 96 PSPGPA-----PG-PGEDGAPAA 112
GP+ PG PGE G P A
Sbjct: 394 GDQGPSGLAGKPGVPGERGLPGA 416
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 46.2 bits (108), Expect = 2e-04
Identities = 36/105 (34%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQ 63
RG A PG G P P SP R G+ G AG PGR GP
Sbjct: 1044 RGLPGAQGAPGLKGGEGPQGPPGPVGSPGER---------GSAGTAGPIGLPGRPGPQGP 1094
Query: 64 LTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDG 108
G P G R G PGP+ GPA PGEDG
Sbjct: 1095 PGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPA-GPAGSPGEDG 1138
Score = 41.2 bits (95), Expect = 0.006
Identities = 39/124 (31%), Positives = 47/124 (37%), Gaps = 18/124 (14%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGR--SPEPGRLGPHA 62
GP GP R PGA P P + +L+L G G+ G S + +
Sbjct: 475 GPPGDPGDRGPPGRPGLPGADGLPGPPGT--MLMLPFRYGGDGSKGPTISAQEAQAQAIL 532
Query: 63 QLTRVP-RSPPA-----GRAEPGGGEDRQARGTEPGAPGPS--------PGPAPGPGEDG 108
Q R+ R PP GR P GG E G PGP PGP PG+ G
Sbjct: 533 QQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRG 592
Query: 109 APAA 112
P A
Sbjct: 593 RPGA 596
Score = 40.8 bits (94), Expect = 0.008
Identities = 43/127 (33%), Positives = 47/127 (37%), Gaps = 37/127 (29%)
Query: 13 PGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRV-PRSP 71
PGP PG P P P + G G G +PG+ GP P P
Sbjct: 1320 PGPVGFPGDPGPPGEP-GPAGQD--------GVGGDKGEDGDPGQPGPPGPSGEAGPPGP 1370
Query: 72 PAGRAEPG--GGEDRQ----ARGTEPGAPGP--------------SPGP-----APGP-G 105
P R PG G E RQ A+G E GA GP PGP PGP G
Sbjct: 1371 PGKRGPPGAAGAEGRQGEKGAKG-EAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVG 1429
Query: 106 EDGAPAA 112
E G P A
Sbjct: 1430 EQGLPGA 1436
Score = 39.7 bits (91), Expect = 0.017
Identities = 35/115 (30%), Positives = 40/115 (34%), Gaps = 21/115 (18%)
Query: 8 RASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRV 67
R +GP P P PP P P G G G + G+ GP V
Sbjct: 930 RGPQGPQGPVGFPGPKGPPGPPGKDGLP--------GHPGQRGETGFQGKTGPPGPGGVV 981
Query: 68 PRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAAGYRRWERAAP 122
P G P G E G PGP PGP PGE G P A + + P
Sbjct: 982 GPQGPTGETGPIG---------ERGHPGP-PGP---PGEQGLPGAAGKEGAKGDP 1023
Score = 39.3 bits (90), Expect = 0.022
Identities = 36/135 (26%), Positives = 42/135 (31%), Gaps = 26/135 (19%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLG----- 59
GP PGP GA P P S +G+ G G EPG G
Sbjct: 1228 GPMGPPGPPGPRGPQGPNGADGPQGPPGS---------VGSVGGVGEKGEPGEAGNPGPP 1278
Query: 60 -------PHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGP-----SPGPAPGPGED 107
P + + P G A P G + G PGP PGP PG
Sbjct: 1279 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPA 1338
Query: 108 GAPAAGYRRWERAAP 122
G G + E P
Sbjct: 1339 GQDGVGGDKGEDGDP 1353
Score = 39.3 bits (90), Expect = 0.022
Identities = 39/115 (33%), Positives = 43/115 (37%), Gaps = 25/115 (21%)
Query: 5 GPSRASKGPGPTARAPSPGA-----PPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLG 59
GP PGP PGA PP P P P L G G+ G PG +G
Sbjct: 1417 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK-----GDPGSKGEKGHPGLIG 1471
Query: 60 PHAQLTRVPRSPPAGRAEPGGGEDRQARGTE--PGAPGPS--PGPAPGPGEDGAP 110
PP + E G DR GT+ PGA G PGPA G G P
Sbjct: 1472 LIG--------PPGEQGEKG---DRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPP 1515
Score = 38.9 bits (89), Expect = 0.029
Identities = 42/133 (31%), Positives = 47/133 (35%), Gaps = 37/133 (27%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLG----- 59
GP + GP PG P PP L GA G G +PG G
Sbjct: 982 GPQGPTGETGPIGERGHPGPPGPPGEQG---------LPGAAGKEGAKGDPGPQGISGKD 1032
Query: 60 PHAQLTRVP--RSPPAGRAEPG--GGE-------------DRQARGTE-----PGAPGPS 97
A L P R P + PG GGE +R + GT PG PGP
Sbjct: 1033 GPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ 1092
Query: 98 PGPAPGPGEDGAP 110
P P GE GAP
Sbjct: 1093 GPPGPA-GEKGAP 1104
Score = 38.9 bits (89), Expect = 0.029
Identities = 34/111 (30%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GPS + PGP + PGA + GA G AG PG+ GP
Sbjct: 1360 GPSGEAGPPGPPGKRGPPGAAGAEGRQGEK---------GAKGEAGAEGPPGKTGPVGPQ 1410
Query: 65 TRVPRSPPAG-RAEPG--GGEDRQARGTEPGAPGPSPGPAPGPGEDGAPAA 112
+ P G R PG G + + G PGP GP PG G P +
Sbjct: 1411 GPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM-GPPGLPGLKGDPGS 1460
Score = 36.6 bits (83), Expect = 0.14
Identities = 31/113 (27%), Positives = 41/113 (36%), Gaps = 23/113 (20%)
Query: 7 SRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTR 66
+ KG A P P P PR G+ GA G + +PG
Sbjct: 875 ANGEKGARGVAGKPGPRGQRGPTGPR-----------GSRGARGPTGKPG---------- 913
Query: 67 VPRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPG-PGEDGAPAAGYRRWE 118
P+ G PG +R +G + P P PG PG+DG P +R E
Sbjct: 914 -PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE 965
Score = 35.4 bits (80), Expect = 0.32
Identities = 37/111 (33%), Positives = 41/111 (36%), Gaps = 25/111 (22%)
Query: 1 MAHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGP 60
+A RGP PGP PG P G+ GA G S +PG GP
Sbjct: 537 IALRGP------PGPMGLTGRPGPVGGP---------------GSSGAKGESGDPGPQGP 575
Query: 61 H-AQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSP-GPAPG-PGEDG 108
Q P P R PG R G EPGA G PG PG+ G
Sbjct: 576 RGVQGPPGPTGKPGKRGRPGADGGRGMPG-EPGAKGDRGFDGLPGLPGDKG 625
Score = 34.3 bits (77), Expect = 0.71
Identities = 30/96 (31%), Positives = 33/96 (34%), Gaps = 21/96 (21%)
Query: 23 GAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTRVPRSPPAGRAEPG--- 79
G P PP R G G G PG GP L PR P +PG
Sbjct: 634 GPPGPPGDDGMR---------GEDGEIGPRGLPGEAGPRGLLG--PRGTPGAPGQPGMAG 682
Query: 80 -----GGEDRQARGTEPGAPGP--SPGPAPGPGEDG 108
G + EPG PG +PGP PG G
Sbjct: 683 VDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQG 718
Score = 33.5 bits (75), Expect = 1.2
Identities = 32/110 (29%), Positives = 35/110 (31%), Gaps = 21/110 (19%)
Query: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQL 64
GP GP G P P P G G G G +GP +
Sbjct: 652 GPRGLPGEAGPRGLLGPRGTPGAPGQP------------GMAGVDGPPGPKGNMGPQGE- 698
Query: 65 TRVPRSPPAGRAEPG--GGEDRQARGTEPGAPGPS--PGPAPGPGEDGAP 110
PP + PG G Q PG GP PG A PG DG P
Sbjct: 699 ----PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP 744
Score = 33.1 bits (74), Expect = 1.6
Identities = 35/127 (27%), Positives = 42/127 (33%), Gaps = 28/127 (22%)
Query: 4 RGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEP-------- 55
+GP PGP PG P P R G G G++ P
Sbjct: 933 QGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR---------GETGFQGKTGPPGPGGVVGP 983
Query: 56 ----GRLGPHAQLTRV-PRSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAPG-----PG 105
G GP + P PP + PG A+G +PG G S P PG
Sbjct: 984 QGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKG-DPGPQGISGKDGPAGLRGFPG 1042
Query: 106 EDGAPAA 112
E G P A
Sbjct: 1043 ERGLPGA 1049
Score = 31.6 bits (70), Expect = 4.6
Identities = 32/112 (28%), Positives = 37/112 (33%), Gaps = 22/112 (19%)
Query: 7 SRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRSPEPGRLGPHAQLTR 66
S + GP P P PP P + P G G G + G GP
Sbjct: 1076 SAGTAGPIGLPGRPGPQGPPGPAGEKGAP--------GEKGPQGPAGRDGVQGP------ 1121
Query: 67 VPRSPPAGRAEPGGGEDRQARGTEPGAPGPS--------PGPAPGPGEDGAP 110
V PAG A G + + EPG G PGP G GAP
Sbjct: 1122 VGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAP 1173
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,456,391
Number of Sequences: 37866
Number of extensions: 2649871
Number of successful extensions: 25973
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 1045
Number of HSP's that attempted gapping in prelim test: 17173
Number of HSP's gapped (non-prelim): 6399
length of query: 1159
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1046
effective length of database: 13,968,660
effective search space: 14611218360
effective search space used: 14611218360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.