Guide to the Human Genome
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Name: SORCS1 Sequence: fasta or formatted (1198aa) NCBI GI: 61743975
Description:

SORCS receptor 1 isoform b

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [1168aa] SORCS receptor 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         73           2
 C cysteine            1.7         20           2
 D aspartate           5.0         60           2
 E glutamate           5.8         70           3
 F phenylalanine       3.2         38           1
 G glycine             7.6         91           3
 H histidine           2.8         34           1
 I isoleucine          4.8         58           2
 K lysine              4.4         53           2
 L leucine             9.3        112           2
 M methionine          2.0         24           1
 N asparagine          4.1         49           2
 P proline             5.3         63           1
 Q glutamine           4.5         54           2
 R arginine            5.8         69           4
 S serine              8.8        106           2
 T threonine           5.8         70           2
 V valine              7.4         89           2
 W tryptophan          1.4         17           2
 Y tyrosine            4.0         48           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SORCS receptor 1 isoform b 
SORCS1                0.942   SORCS receptor 1 isoform a 
SORCS3                0.652   VPS10 domain receptor protein SORCS 3 
SORCS2                0.410   VPS10 domain receptor protein SORCS 2 
SORL1                 0.095   sortilin-related receptor containing LDLR class A rep...
SORT1                 0.084   sortilin 1 preproprotein 
LOC100291634          0.007   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.007   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.007   PREDICTED: hypothetical protein 
LOC100129810          0.006   PREDICTED: hypothetical protein 
LOC100129810          0.006   PREDICTED: hypothetical protein 
LOC100291096          0.006   PREDICTED: hypothetical protein XP_002346952 
LOC100129810          0.006   PREDICTED: hypothetical protein 
LOC100129810          0.006   PREDICTED: hypothetical protein 
JSRP1                 0.005   junctional sarcoplasmic reticulum protein 1 
LOC100292723          0.005   PREDICTED: hypothetical protein 
DTX1                  0.005   deltex homolog 1 
FOXH1                 0.004   forkhead box H1 
KAT5                  0.004   K(lysine) acetyltransferase 5 isoform 3 
RRP1                  0.004   ribosomal RNA processing 1 homolog 
TNKS1BP1              0.004   tankyrase 1-binding protein 1 
COL5A1                0.004   alpha 1 type V collagen preproprotein 
LMO2                  0.004   LIM domain only 2 isoform 1 
VASP                  0.004   vasodilator-stimulated phosphoprotein 
LOC338758             0.004   PREDICTED: hypothetical protein 
LOC338758             0.004   PREDICTED: hypothetical protein 
LOC100130897          0.004   PREDICTED: hypothetical protein 
LOC338758             0.004   PREDICTED: hypothetical protein 
LOC100130897          0.004   PREDICTED: hypothetical protein 
MARCO                 0.004   macrophage receptor with collagenous structure 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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