Guide to the Human Genome
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Name: LOC100131098 Sequence: fasta or formatted (257aa) NCBI GI: 169205117
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {257aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         27           2
 C cysteine            3.5          9           2
 D aspartate           1.2          3           1
 E glutamate           3.1          8           1
 F phenylalanine       1.6          4           1
 G glycine            13.2         34           2
 H histidine           0.4          1           1
 I isoleucine          1.9          5           1
 K lysine              5.4         14           2
 L leucine             9.3         24           2
 M methionine          0.4          1           1
 N asparagine          3.1          8           1
 P proline            13.2         34           4
 Q glutamine           4.7         12           1
 R arginine           12.1         31           2
 S serine              5.4         14           1
 T threonine           4.7         12           2
 V valine              4.3         11           1
 W tryptophan          0.8          2           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131098          0.994   PREDICTED: hypothetical protein 
SORCS2                0.049   VPS10 domain receptor protein SORCS 2 
KLF2                  0.035   Kruppel-like factor 
RANBP9                0.029   RAN binding protein 9 
COL9A3                0.029   alpha 3 type IX collagen 
PPARGC1B              0.029   peroxisome proliferator-activated receptor gamma, co...
LOC100129571          0.029   PREDICTED: similar to hCG1646049 
LOC100129571          0.029   PREDICTED: similar to hCG1646049 
LOC100129571          0.029   PREDICTED: similar to hCG1646049 
LOC100289565          0.027   PREDICTED: hypothetical protein XP_002342184 
TAL1                  0.027   T-cell acute lymphocytic leukemia 1 
CPSF6                 0.027   cleavage and polyadenylation specific factor 6, 68 ...
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
COL7A1                0.027   alpha 1 type VII collagen precursor 
KRBA1                 0.027   KRAB A domain containing 1 
LOC100293644          0.025   PREDICTED: hypothetical protein 
LOC100287563          0.025   PREDICTED: hypothetical protein 
LOC100287563          0.025   PREDICTED: hypothetical protein XP_002343733 
C1orf229              0.025   hypothetical protein LOC388759 
LOC100292124          0.024   PREDICTED: hypothetical protein XP_002346387 
LOC390595             0.024   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.024   PREDICTED: similar to ubiquitin-associated protein ...
LOC728597             0.024   PREDICTED: doublecortin domain-containing protein E...
LOC390595             0.024   PREDICTED: hypothetical protein 
LOC728597             0.024   PREDICTED: doublecortin domain-containing protein E...
CELSR3                0.024   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
ARHGEF15              0.024   Rho guanine exchange factor 15 
SORCS3                0.024   VPS10 domain receptor protein SORCS 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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