Search of human proteins with 169218140

Search of human proteins with 169218140

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169218140 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1, partial [Homo sapiens]
         (153 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169218140 PREDICTED: similar to major histocompatibility comp...   315   7e-87
gi|239740861 PREDICTED: similar to major histocompatibility comp...   298   2e-81
gi|239513953 PREDICTED: similar to major histocompatibility comp...   298   2e-81
gi|169217612 PREDICTED: similar to major histocompatibility comp...   287   3e-78
gi|239740747 PREDICTED: similar to major histocompatibility comp...   287   3e-78
gi|239740697 PREDICTED: similar to major histocompatibility comp...   287   3e-78
gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]    285   8e-78
gi|113430811 PREDICTED: similar to major histocompatibility comp...   285   1e-77
gi|18426975 major histocompatibility complex, class II, DQ alpha...   283   3e-77
gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa...   283   4e-77
gi|11095447 major histocompatibility complex, class II, DQ alpha...   279   6e-76
gi|52426774 major histocompatibility complex, class II, DR alpha...   202   1e-52
gi|24797074 major histocompatibility complex, class II, DP alpha...   201   3e-52
gi|4504401 major histocompatibility complex, class II, DO alpha ...   190   5e-49
gi|18765715 major histocompatibility complex, class II, DM alpha...    84   6e-17
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...    72   1e-13
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...    70   7e-13
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...    70   7e-13
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...    70   7e-13
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...    70   7e-13
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...    70   7e-13
gi|18641375 major histocompatibility complex, class II, DR beta ...    70   7e-13
gi|4504399 major histocompatibility complex, class II, DM beta p...    70   7e-13
gi|52630344 major histocompatibility complex, class II, DR beta ...    70   9e-13
gi|239758090 PREDICTED: major histocompatibility complex, class ...    70   9e-13
gi|239740855 PREDICTED: similar to major histocompatibility comp...    70   9e-13
gi|239740853 PREDICTED: similar to major histocompatibility comp...    70   9e-13
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...    69   1e-12
gi|239740859 PREDICTED: similar to major histocompatibility comp...    69   1e-12
gi|239740857 PREDICTED: similar to major histocompatibility comp...    69   1e-12

>gi|169218140 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 153

 Score =  315 bits (808), Expect = 7e-87
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   HQCCFLTTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETS 60
           HQCCFLTTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETS
Sbjct: 1   HQCCFLTTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETS 60

Query: 61  FLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCA 120
           FLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCA
Sbjct: 61  FLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCA 120

Query: 121 LGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL 153
           LGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL
Sbjct: 121 LGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL 153


>gi|239740861 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  298 bits (762), Expect = 2e-81
 Identities = 146/147 (99%), Positives = 146/147 (99%)

Query: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66
           T EVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
           HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG
Sbjct: 168 HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 227

Query: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153
           LVGIVVGTVFIIRGLRSVGASRHQGPL
Sbjct: 228 LVGIVVGTVFIIRGLRSVGASRHQGPL 254


>gi|239513953 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  298 bits (762), Expect = 2e-81
 Identities = 146/147 (99%), Positives = 146/147 (99%)

Query: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66
           T EVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
           HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG
Sbjct: 168 HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 227

Query: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153
           LVGIVVGTVFIIRGLRSVGASRHQGPL
Sbjct: 228 LVGIVVGTVFIIRGLRSVGASRHQGPL 254


>gi|169217612 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 isoform 1 [Homo sapiens]
          Length = 254

 Score =  287 bits (734), Expect = 3e-78
 Identities = 140/147 (95%), Positives = 142/147 (96%)

Query: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66
           T EVPEVTVFSKSPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
           HSFFKISYLT LPSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVG
Sbjct: 168 HSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVG 227

Query: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153
           LVGIVVGTV IIRGLRSVGASRHQGPL
Sbjct: 228 LVGIVVGTVLIIRGLRSVGASRHQGPL 254


>gi|239740747 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  287 bits (734), Expect = 3e-78
 Identities = 140/147 (95%), Positives = 142/147 (96%)

Query: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66
           T EVPEVTVFSKSPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
           HSFFKISYLT LPSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVG
Sbjct: 168 HSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVG 227

Query: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153
           LVGIVVGTV IIRGLRSVGASRHQGPL
Sbjct: 228 LVGIVVGTVLIIRGLRSVGASRHQGPL 254


>gi|239740697 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score =  287 bits (734), Expect = 3e-78
 Identities = 140/147 (95%), Positives = 142/147 (96%)

Query: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66
           T EVPEVTVFSKSPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
           HSFFKISYLT LPSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVG
Sbjct: 168 HSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVG 227

Query: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153
           LVGIVVGTV IIRGLRSVGASRHQGPL
Sbjct: 228 LVGIVVGTVLIIRGLRSVGASRHQGPL 254


>gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]
          Length = 255

 Score =  285 bits (730), Expect = 8e-78
 Identities = 139/147 (94%), Positives = 141/147 (95%)

Query: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66
           T EVPEVTVFSKSPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 109 TNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 168

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
           HSFFKISYLT LPSA+E YDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVG
Sbjct: 169 HSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVG 228

Query: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153
           LVGIVVGTV IIRGLRSVGASRHQGPL
Sbjct: 229 LVGIVVGTVLIIRGLRSVGASRHQGPL 255


>gi|113430811 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 255

 Score =  285 bits (728), Expect = 1e-77
 Identities = 139/147 (94%), Positives = 141/147 (95%)

Query: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66
           T EVPEVTVFSKSPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 109 TNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 168

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
           HSFFKISYLT LPS +E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVG
Sbjct: 169 HSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVG 228

Query: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153
           LVGIVVGTV IIRGLRSVGASRHQGPL
Sbjct: 229 LVGIVVGTVLIIRGLRSVGASRHQGPL 255


>gi|18426975 major histocompatibility complex, class II, DQ alpha 1
           precursor [Homo sapiens]
          Length = 255

 Score =  283 bits (725), Expect = 3e-77
 Identities = 138/147 (93%), Positives = 142/147 (96%)

Query: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66
           T EVPEVTVFSKSPVTLGQPN LICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSD
Sbjct: 109 TNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSD 168

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
           HSFFKISYLT LPSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVG
Sbjct: 169 HSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVG 228

Query: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153
           L+GIVVGTVFII+GLRSVGASRHQGPL
Sbjct: 229 LMGIVVGTVFIIQGLRSVGASRHQGPL 255


>gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 255

 Score =  283 bits (724), Expect = 4e-77
 Identities = 138/147 (93%), Positives = 140/147 (95%)

Query: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66
           T EVPEVTVFSKSPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 109 TNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 168

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
           HSFFKISYLT LPS +E YDCKVEHWGLD+PLLKHWEPEIP PMSELTETVVCALGLSVG
Sbjct: 169 HSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVG 228

Query: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153
           LVGIVVGTV IIRGLRSVGASRHQGPL
Sbjct: 229 LVGIVVGTVLIIRGLRSVGASRHQGPL 255


>gi|11095447 major histocompatibility complex, class II, DQ alpha 2
           [Homo sapiens]
          Length = 255

 Score =  279 bits (714), Expect = 6e-76
 Identities = 136/147 (92%), Positives = 141/147 (95%)

Query: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66
           T EVPEVTVFSK PVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD
Sbjct: 109 TNEVPEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 168

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
           HSFFKISYLT LPSA+E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET+VCALGLSVG
Sbjct: 169 HSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVG 228

Query: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153
           L+GIVVGTVFII+GLRSVGASRHQG L
Sbjct: 229 LMGIVVGTVFIIQGLRSVGASRHQGLL 255


>gi|52426774 major histocompatibility complex, class II, DR alpha
           precursor [Homo sapiens]
          Length = 254

 Score =  202 bits (513), Expect = 1e-52
 Identities = 92/148 (62%), Positives = 112/148 (75%)

Query: 6   LTTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKS 65
           +T   PEVTV + SPV L +PN+LIC +D   PPVVN+TWL NG  VT GVSET FL + 
Sbjct: 107 ITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPRE 166

Query: 66  DHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSV 125
           DH F K  YL  LPS E+ YDC+VEHWGLD+PLLKHWE + P+P+ E TE VVCALGL+V
Sbjct: 167 DHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTV 226

Query: 126 GLVGIVVGTVFIIRGLRSVGASRHQGPL 153
           GLVGI++GT+FII+GLR   A+  +GPL
Sbjct: 227 GLVGIIIGTIFIIKGLRKSNAAERRGPL 254


>gi|24797074 major histocompatibility complex, class II, DP alpha 1
           precursor [Homo sapiens]
          Length = 260

 Score =  201 bits (510), Expect = 3e-52
 Identities = 95/147 (64%), Positives = 113/147 (76%)

Query: 7   TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66
           T + PEVTVF K PV LGQPN LIC +D  FPPV+N+TWL NG  VTEGV+E+ FL ++D
Sbjct: 114 TNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTD 173

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
           +SF K  YLT +PSAE+ YDC+VEHWGLD+PLLKHWE + P  M E TETV+CALGL +G
Sbjct: 174 YSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLG 233

Query: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153
           LVGI+VGTV II+ LRS    R QG L
Sbjct: 234 LVGIIVGTVLIIKSLRSGHDPRAQGTL 260


>gi|4504401 major histocompatibility complex, class II, DO alpha
           precursor [Homo sapiens]
          Length = 250

 Score =  190 bits (482), Expect = 5e-49
 Identities = 87/130 (66%), Positives = 104/130 (80%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           P VTV  KS V LGQPNILIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F 
Sbjct: 113 PRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFR 172

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
           K  YL  +PSAE+ YDC+VEHWGLD PLL+HWE ++P P  +  ET+VCALGL++GLVG 
Sbjct: 173 KFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGF 232

Query: 131 VVGTVFIIRG 140
           +VGTV II G
Sbjct: 233 LVGTVLIIMG 242


>gi|18765715 major histocompatibility complex, class II, DM alpha
           precursor [Homo sapiens]
          Length = 261

 Score = 83.6 bits (205), Expect = 6e-17
 Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSV-TEGVSETSFLSKSDHSF 69
           P   VF+  P+  G+PN L+C V N+FPP++ + W    HSV  EG   T   +    SF
Sbjct: 127 PIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNW--QHHSVPVEGFGPTFVSAVDGLSF 184

Query: 70  FKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVG 129
              SYL   P   + + C V H       + +W P    P S+L E V+C +   +G++G
Sbjct: 185 QAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNALP-SDLLENVLCGVAFGLGVLG 243

Query: 130 IVVGTVFII 138
           I+VG V II
Sbjct: 244 IIVGIVLII 252


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score = 72.4 bits (176), Expect = 1e-13
 Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 4   CFLTTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLS 63
           CFL    PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  + 
Sbjct: 107 CFLLVH-PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ 165

Query: 64  KSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGL 123
             D +F  +  L  +P + E Y C+VEH  +  PL   W     +  S++          
Sbjct: 166 NGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS-------- 217

Query: 124 SVGLVGIVVGTVFIIRGL 141
             G+ G V+G +F+  GL
Sbjct: 218 --GVGGFVLGLLFLGAGL 233


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score = 70.1 bits (170), Expect = 7e-13
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 70.1 bits (170), Expect = 7e-13
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 70.1 bits (170), Expect = 7e-13
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 124 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 183

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 184 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 233

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 234 VLGLLFLGAGL 244


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 70.1 bits (170), Expect = 7e-13
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 70.1 bits (170), Expect = 7e-13
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           PEVTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 124 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 183

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 184 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLS----------GVGGF 233

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 234 VLGLLFLGAGL 244


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score = 70.1 bits (170), Expect = 7e-13
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           P+VTV+     TL   N+L+C V+  +P  + + W  N      GV  T  +   D +F 
Sbjct: 126 PKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQ 185

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W  +  +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLS----------GVGGF 235

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|4504399 major histocompatibility complex, class II, DM beta
           precursor [Homo sapiens]
          Length = 263

 Score = 70.1 bits (170), Expect = 7e-13
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 3/129 (2%)

Query: 8   TEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVS-ETSFLSKSD 66
           T  P V V   +P    +P +L C V   +P  V ITW  NG  V    S   +     D
Sbjct: 112 TRPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGD 171

Query: 67  HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126
            ++  +S+L L PS  ++Y C VEH G  +P+L+ W P + +PM  L +  V A+ L +G
Sbjct: 172 WTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGL-SPMQTL-KVSVSAVTLGLG 229

Query: 127 LVGIVVGTV 135
           L+   +G +
Sbjct: 230 LIIFSLGVI 238


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score = 69.7 bits (169), Expect = 9e-13
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           P+VTV+      L   N+L+C V+  +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLS----------GVGGF 235

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 236 VLGLLFLGTGL 246


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score = 69.7 bits (169), Expect = 9e-13
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           P+VTV+      L   N+L+C V+  +P  + + W  NG     GV  T  +   D +F 
Sbjct: 138 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 197

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 198 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLS----------GVGGF 247

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 248 VLGLLFLGTGL 258


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score = 69.7 bits (169), Expect = 9e-13
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           P+VTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 127 PQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 186

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 187 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLS----------GVGGF 236

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 237 VLGLLFLGAGL 247


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score = 69.7 bits (169), Expect = 9e-13
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           P+VTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLS----------GVGGF 235

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           P+VTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQ 185

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           P+VTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 127 PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQ 186

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 187 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLS----------GVGGF 236

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 237 VLGLLFLGAGL 247


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 11  PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
           P+VTV+      L   N+L+C V   +P  + + W  NG     GV  T  +   D +F 
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQ 185

Query: 71  KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 130
            +  L  +P + E Y C+VEH  +  PL   W     +  S++            G+ G 
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLS----------GVGGF 235

Query: 131 VVGTVFIIRGL 141
           V+G +F+  GL
Sbjct: 236 VLGLLFLGAGL 246


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,057,993
Number of Sequences: 37866
Number of extensions: 252620
Number of successful extensions: 738
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 117
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.