Search of human proteins with 169217452

Search of human proteins with 169217452

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169217452 PREDICTED: similar to HLA class II
histocompatibility antigen, DRB1-4 beta chain, partial [Homo sapiens]
         (223 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169217452 PREDICTED: similar to HLA class II histocompatibili...   469   e-133
gi|239758090 PREDICTED: major histocompatibility complex, class ...   349   9e-97
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...   347   6e-96
gi|239740853 PREDICTED: similar to major histocompatibility comp...   343   9e-95
gi|155030211 major histocompatibility complex, class II, DR beta...   338   2e-93
gi|17986005 major histocompatibility complex, class II, DR beta ...   338   3e-93
gi|239740857 PREDICTED: similar to major histocompatibility comp...   336   1e-92
gi|239740855 PREDICTED: similar to major histocompatibility comp...   336   1e-92
gi|18641375 major histocompatibility complex, class II, DR beta ...   333   5e-92
gi|239740859 PREDICTED: similar to major histocompatibility comp...   330   6e-91
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...   329   1e-90
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...   329   1e-90
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...   329   1e-90
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...   329   1e-90
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...   326   9e-90
gi|52630344 major histocompatibility complex, class II, DR beta ...   324   4e-89
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...   260   6e-70
gi|24797076 major histocompatibility complex, class II, DP beta ...   259   1e-69
gi|150418002 major histocompatibility complex, class II, DQ beta...   251   3e-67
gi|239758095 PREDICTED: similar to major histocompatibility comp...   251   3e-67
gi|239740749 PREDICTED: similar to major histocompatibility comp...   251   3e-67
gi|239748788 PREDICTED: similar to major histocompatibility comp...   249   2e-66
gi|239740863 PREDICTED: similar to major histocompatibility comp...   249   2e-66
gi|239513955 PREDICTED: similar to major histocompatibility comp...   249   2e-66
gi|169168591 PREDICTED: similar to major histocompatibility comp...   248   2e-66
gi|239740920 PREDICTED: similar to major histocompatibility comp...   248   4e-66
gi|239740918 PREDICTED: similar to major histocompatibility comp...   248   4e-66
gi|4504403 major histocompatibility complex, class II, DO beta p...   240   8e-64
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa...   158   4e-39
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa...   151   4e-37

>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score =  469 bits (1208), Expect = e-133
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MKATPVRLRKTEDEPLGCVLSGLRVGPDSVFPGGRFCNRIVLVPPARFLEQVKHECHFFN 60
           MKATPVRLRKTEDEPLGCVLSGLRVGPDSVFPGGRFCNRIVLVPPARFLEQVKHECHFFN
Sbjct: 1   MKATPVRLRKTEDEPLGCVLSGLRVGPDSVFPGGRFCNRIVLVPPARFLEQVKHECHFFN 60

Query: 61  GTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYC 120
           GTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYC
Sbjct: 61  GTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYC 120

Query: 121 RHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEK 180
           RHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEK
Sbjct: 121 RHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEK 180

Query: 181 TGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           TGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS
Sbjct: 181 TGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score =  349 bits (896), Expect = 9e-97
 Identities = 170/204 (83%), Positives = 183/204 (89%), Gaps = 2/204 (0%)

Query: 22  GLRVG--PDSVFPGGRFCNRIVLVPPARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYV 79
           G+RVG    SVF GGR C+RIV VP ARFLEQ K ECHF NGTERV  L RY Y+QEEY 
Sbjct: 20  GVRVGGVAVSVFSGGRPCDRIVRVPTARFLEQAKCECHFLNGTERVWNLIRYIYNQEEYA 79

Query: 80  RFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPE 139
           R++SD+GEY+AVTELGRPDAEYWNSQKDLLE++RA VDTYCR+NYGV ESFTVQRRV P+
Sbjct: 80  RYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPK 139

Query: 140 VTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTL 199
           VTVYP+KTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTL
Sbjct: 140 VTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTL 199

Query: 200 VMLETVPRSGEVYTCQVEHPSLTS 223
           VMLETVPRSGEVYTCQVEHPS+ S
Sbjct: 200 VMLETVPRSGEVYTCQVEHPSMMS 223


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score =  347 bits (889), Expect = 6e-96
 Identities = 162/177 (91%), Positives = 173/177 (97%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFLE+VK ECHFFNGTERVR L+RYF++QEE VRFDSDVGE+RAVTELGRPDAEYWNSQK
Sbjct: 35  RFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
           DLLEQ+RAAVDTYCRHNYGVGESFTVQRRV+P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           SIEVRWFRNGQEEKTGVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 211


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  343 bits (879), Expect = 9e-95
 Identities = 160/177 (90%), Positives = 169/177 (95%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFLE +K ECHFFNGTERVRFL+R+F++QEEY RFDSDVGEYRAV ELGRPDAEYWNSQK
Sbjct: 35  RFLELLKSECHFFNGTERVRFLERHFHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQK 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
           DLLEQKR  VD YCRHNYGVGESFTVQRRV+P+VTVYPAKTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DLLEQKRGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           SIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 211


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score =  338 bits (867), Expect = 2e-93
 Identities = 160/177 (90%), Positives = 168/177 (94%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFL Q K ECHFFNGTERVRFLDRYFY+QEE VRFDSDVGE+RAVTELGRPDAEYWNSQK
Sbjct: 35  RFLWQPKRECHFFNGTERVRFLDRYFYNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQK 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
           D+LEQ RAAVDTYCRHNYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DILEQARAAVDTYCRHNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           SIEVRWF NGQEEK G+VSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 155 SIEVRWFLNGQEEKAGMVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 211


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score =  338 bits (866), Expect = 3e-93
 Identities = 159/177 (89%), Positives = 168/177 (94%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFLE  K ECHFFNGTERVR+LDRYF++QEE++RFDSDVGEYRAVTELGRP AE WNSQK
Sbjct: 35  RFLELRKSECHFFNGTERVRYLDRYFHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
           DLLEQKR  VD YCRHNYGVGESFTVQRRV+P+VTVYPAKTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DLLEQKRGRVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           SIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 211


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  336 bits (861), Expect = 1e-92
 Identities = 158/177 (89%), Positives = 167/177 (94%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFLE    ECHFFNGTERVR+LDRYF++QEE VRFDSDVGE+RAVTELGRPDAEYWNSQK
Sbjct: 35  RFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
           DLLEQKR  VD YCRHNYGV ESFTVQRRV+P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           SIEVRWFRNGQEEKTGVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 211


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  336 bits (861), Expect = 1e-92
 Identities = 156/172 (90%), Positives = 165/172 (95%)

Query: 52  VKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQ 111
           +K ECHFFNGTERVRFL+R+F++QEEY RFDSDVGEYRAV ELGRPDAEYWNSQKDLLEQ
Sbjct: 41  LKSECHFFNGTERVRFLERHFHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQ 100

Query: 112 KRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVR 171
           KR  VD YCRHNYGVGESFTVQRRV+P+VTVYPAKTQPLQHHNLLVCSV+GFYPGSIEVR
Sbjct: 101 KRGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVR 160

Query: 172 WFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           WFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 161 WFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 212


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score =  333 bits (855), Expect = 5e-92
 Identities = 158/177 (89%), Positives = 166/177 (93%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFL+Q K+ECHFFNGTERVRFL R  Y+QEE +RFDSDVGEYRAVTELGRPDAEYWNSQK
Sbjct: 35  RFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQK 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
           D LE +RAAVDTYCRHNYGVGESFTVQRRV P+VTVYPA+TQ LQHHNLLVCSVNGFYPG
Sbjct: 95  DFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPG 154

Query: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           SIEVRWFRN QEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 155 SIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 211


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  330 bits (846), Expect = 6e-91
 Identities = 154/169 (91%), Positives = 163/169 (96%)

Query: 55  ECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRA 114
           ECHFFNGTERVR+LDRYF++QEE VRFDSDVGE+RAVTELGRPDAEYWNSQKDLLEQKR 
Sbjct: 44  ECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRG 103

Query: 115 AVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFR 174
            VD YCRHNYGV ESFTVQRRV+P+VTVYP+KTQPLQHHNLLVCSV+GFYPGSIEVRWFR
Sbjct: 104 RVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFR 163

Query: 175 NGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           NGQEEKTGVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 164 NGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 212


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  329 bits (844), Expect = 1e-90
 Identities = 155/178 (87%), Positives = 167/178 (93%)

Query: 46  ARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQ 105
           +RFL Q K++CHFFNGTERV+FL+R FY+QEE+VRFDSDVGEYRAVTELGRP AE WNSQ
Sbjct: 32  SRFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQ 91

Query: 106 KDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYP 165
           KD+LE +R  VDT CRHNYGVGESFTVQRRV+PEVTVYPAKTQPLQHHNLLVCSV+GFYP
Sbjct: 92  KDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYP 151

Query: 166 GSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           GSIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ S
Sbjct: 152 GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMS 209


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  329 bits (844), Expect = 1e-90
 Identities = 155/178 (87%), Positives = 167/178 (93%)

Query: 46  ARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQ 105
           +RFL Q K++CHFFNGTERV+FL+R FY+QEE+VRFDSDVGEYRAVTELGRP AE WNSQ
Sbjct: 32  SRFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQ 91

Query: 106 KDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYP 165
           KD+LE +R  VDT CRHNYGVGESFTVQRRV+PEVTVYPAKTQPLQHHNLLVCSV+GFYP
Sbjct: 92  KDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYP 151

Query: 166 GSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           GSIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ S
Sbjct: 152 GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMS 209


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  329 bits (843), Expect = 1e-90
 Identities = 155/177 (87%), Positives = 166/177 (93%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFL Q K++CHFFNGTERV+FL+R FY+QEE+VRFDSDVGEYRAVTELGRP AE WNSQK
Sbjct: 35  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
           D+LE +R  VDT CRHNYGVGESFTVQRRV+PEVTVYPAKTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           SIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ S
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMS 211


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  329 bits (843), Expect = 1e-90
 Identities = 155/177 (87%), Positives = 166/177 (93%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFL Q K++CHFFNGTERV+FL+R FY+QEE+VRFDSDVGEYRAVTELGRP AE WNSQK
Sbjct: 35  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
           D+LE +R  VDT CRHNYGVGESFTVQRRV+PEVTVYPAKTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           SIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ S
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMS 211


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score =  326 bits (836), Expect = 9e-90
 Identities = 156/177 (88%), Positives = 164/177 (92%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFL+Q K ECHFFNGTERVR+L R  Y+QEE VRFDSDVGEYRAVTELGRP AE WNSQK
Sbjct: 35  RFLKQDKFECHFFNGTERVRYLHRGIYNQEENVRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
           D LE++RA VDT CRHNYGVGESFTVQRRV+PEVTVYPAKTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           SIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ S
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMS 211


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score =  324 bits (830), Expect = 4e-89
 Identities = 153/177 (86%), Positives = 164/177 (92%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFLEQ K ECHF NGTERV  L RY Y+QEEY R++SD+GEY+AVTELGRPDAEYWNSQK
Sbjct: 35  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
           DLLE++RA VDTYCR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSVNGFYPG
Sbjct: 95  DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 154

Query: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           SIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ S
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMS 211


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score =  260 bits (665), Expect = 6e-70
 Identities = 134/179 (74%), Positives = 146/179 (81%), Gaps = 17/179 (9%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFL Q K++CHFFNGTERV+FL+R FY+QEE+VRFDSDVGEYRAVTELGRP AE    Q 
Sbjct: 35  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAEQKTKQG 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQ--RRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           DLL          C     + +SF +     V+PEVTVYPAKTQPLQHHNLLVCSV+GFY
Sbjct: 95  DLL----------C-----LPDSFPLPCFLLVHPEVTVYPAKTQPLQHHNLLVCSVSGFY 139

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           PGSIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ S
Sbjct: 140 PGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMS 198


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score =  259 bits (662), Expect = 1e-69
 Identities = 123/179 (68%), Positives = 141/179 (78%), Gaps = 2/179 (1%)

Query: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104
           P  +L Q + EC+ FNGT+R  FL+RY Y++EE+ RFDSDVGE+RAVTELGRP AEYWNS
Sbjct: 33  PENYLFQGRQECYAFNGTQR--FLERYIYNREEFARFDSDVGEFRAVTELGRPAAEYWNS 90

Query: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           QKD+LE+KRA  D  CRHNY +G   T+QRRV P V V P+K  PLQHHNLLVC V  FY
Sbjct: 91  QKDILEEKRAVPDRMCRHNYELGGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFY 150

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           PGSI+VRWF NGQEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTCQVEH SL S
Sbjct: 151 PGSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDS 209


>gi|150418002 major histocompatibility complex, class II, DQ beta 1
           precursor [Homo sapiens]
          Length = 261

 Score =  251 bits (642), Expect = 3e-67
 Identities = 120/179 (67%), Positives = 137/179 (76%)

Query: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104
           P  F+ Q K  C+F NGTERVR + RY Y++EEY RFDSDVG YRAVT  GRPDAEYWNS
Sbjct: 36  PEDFVFQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNS 95

Query: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           QK++LE  RA +DT CRHNY V     +QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 96  QKEVLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           PG I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL S
Sbjct: 156 PGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS 214


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  251 bits (642), Expect = 3e-67
 Identities = 121/179 (67%), Positives = 139/179 (77%)

Query: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104
           P  F+ Q K  C+F NGTERVR + R  Y++EE VRFDSDVGE+RAVT LG P AEYWNS
Sbjct: 36  PEDFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNS 95

Query: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           QKD+LE+KRAAVD  CRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 96  QKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           P  I+VRWFRNGQEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL S
Sbjct: 156 PAQIKVRWFRNGQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS 214


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  251 bits (642), Expect = 3e-67
 Identities = 121/179 (67%), Positives = 139/179 (77%)

Query: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104
           P  F+ Q K  C+F NGTERVR + R  Y++EE VRFDSDVGE+RAVT LG P AEYWNS
Sbjct: 36  PEDFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNS 95

Query: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           QKD+LE+KRAAVD  CRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 96  QKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           P  I+VRWFRNGQEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL S
Sbjct: 156 PAQIKVRWFRNGQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS 214


>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score =  249 bits (635), Expect = 2e-66
 Identities = 120/179 (67%), Positives = 138/179 (77%)

Query: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104
           P  F+ Q K  C+F NGTERVR + R  Y++EE VRFDSDVGE+RAVT LG P AEYWNS
Sbjct: 36  PEDFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNS 95

Query: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           QKD+LE+KRAAVD  CRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 96  QKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           P  I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL S
Sbjct: 156 PAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS 214


>gi|239740863 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  249 bits (635), Expect = 2e-66
 Identities = 120/179 (67%), Positives = 138/179 (77%)

Query: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104
           P  F+ Q K  C+F NGTERVR + R  Y++EE VRFDSDVGE+RAVT LG P AEYWNS
Sbjct: 36  PEDFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNS 95

Query: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           QKD+LE+KRAAVD  CRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 96  QKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           P  I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL S
Sbjct: 156 PAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS 214


>gi|239513955 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  249 bits (635), Expect = 2e-66
 Identities = 120/179 (67%), Positives = 138/179 (77%)

Query: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104
           P  F+ Q K  C+F NGTERVR + R  Y++EE VRFDSDVGE+RAVT LG P AEYWNS
Sbjct: 36  PEDFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNS 95

Query: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           QKD+LE+KRAAVD  CRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 96  QKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           P  I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL S
Sbjct: 156 PAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS 214


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score =  248 bits (634), Expect = 2e-66
 Identities = 119/179 (66%), Positives = 138/179 (77%)

Query: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104
           P  F+ Q K  C+F NGTERVR + RY Y++EEY RFDSDVG YRAVT LG P AEYWNS
Sbjct: 36  PEDFVFQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNS 95

Query: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           QK++LE+ RA+VDT CRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 96  QKEVLERTRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           P  I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL S
Sbjct: 156 PAQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS 214


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score =  248 bits (632), Expect = 4e-66
 Identities = 118/177 (66%), Positives = 137/177 (77%)

Query: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104
           P  F+ Q K  C+F NGTERVR + RY Y++EEY RFDSDVG YRAVT LG P AEYWNS
Sbjct: 36  PEDFVYQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNS 95

Query: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           QK++LE+ RA +DT CRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 96  QKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSL 221
           P  I+VRWFRN QEE TGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL
Sbjct: 156 PAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSL 212


>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score =  248 bits (632), Expect = 4e-66
 Identities = 118/177 (66%), Positives = 137/177 (77%)

Query: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104
           P  F+ Q K  C+F NGTERVR + RY Y++EEY RFDSDVG YRAVT LG P AEYWNS
Sbjct: 36  PEDFVYQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNS 95

Query: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           QK++LE+ RA +DT CRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 96  QKEVLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSL 221
           P  I+VRWFRN QEE TGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL
Sbjct: 156 PAQIKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSL 212


>gi|4504403 major histocompatibility complex, class II, DO beta
           precursor [Homo sapiens]
          Length = 273

 Score =  240 bits (612), Expect = 8e-64
 Identities = 112/179 (62%), Positives = 138/179 (77%)

Query: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104
           P  F+ Q K +C+F NGTE+V+F+ R+ ++ EEYVRFDSDVG + A+T+LG+PDAE WNS
Sbjct: 30  PEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDSDVGMFVALTKLGQPDAEQWNS 89

Query: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164
           + DLLE+ R AVD  CRHNY +G  FTV R+V PEVTVYP +T  L  HNLL CSV GFY
Sbjct: 90  RLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVYPERTPLLHQHNLLHCSVTGFY 149

Query: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
           PG I+++WF NGQEE+ GV+STG I+NGDWTFQT+VMLE  P  G VYTC V+H SL S
Sbjct: 150 PGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVMLEMTPELGHVYTCLVDHSSLLS 208


>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 241

 Score =  158 bits (399), Expect = 4e-39
 Identities = 73/86 (84%), Positives = 79/86 (91%)

Query: 138 PEVTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQ 197
           P+ T+YPAKT+PL H N LVCSV+GFYPGSIEVRWF+NGQEEK  VVS GLIQNGDWTFQ
Sbjct: 101 PKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWTFQ 160

Query: 198 TLVMLETVPRSGEVYTCQVEHPSLTS 223
           TLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 161 TLVMLETVPRSGEVYTCQVEHPSVTS 186


>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 140

 Score =  151 bits (382), Expect = 4e-37
 Identities = 71/89 (79%), Positives = 79/89 (88%)

Query: 47  RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
           RFLEQ K ECHF NGTERV  L RY Y+QEEY R++SD+GEY+AVTELGRPDAEYWNSQK
Sbjct: 35  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 94

Query: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRR 135
           DLLE++RA VDTYCR+NYGV ESFTVQRR
Sbjct: 95  DLLERRRAEVDTYCRYNYGVVESFTVQRR 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,506,227
Number of Sequences: 37866
Number of extensions: 423345
Number of successful extensions: 950
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 773
Number of HSP's gapped (non-prelim): 173
length of query: 223
length of database: 18,247,518
effective HSP length: 98
effective length of query: 125
effective length of database: 14,536,650
effective search space: 1817081250
effective search space used: 1817081250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.