LOC100133811 9214

Name: LOC100133811	Sequence: fasta or formatted (223aa)		NCBI GI: 169217452
Description: PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-4 beta chain, partial		Referenced in: HLA and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.1 7 2 C cysteine 2.7 6 1 D aspartate 4.0 9 1 E glutamate 8.5 19 2 F phenylalanine 5.4 12 2 G glycine 7.6 17 2 H histidine 3.1 7 2 I isoleucine 1.3 3 1 K lysine 3.1 7 1 L leucine 7.6 17 2 M methionine 0.9 2 1 N asparagine 3.6 8 1 P proline 5.8 13 2 Q glutamine 4.9 11 1 R arginine 8.5 19 2 S serine 4.9 11 1 T threonine 6.7 15 1 V valine 11.7 26 2 W tryptophan 1.3 3 1 Y tyrosine 4.9 11 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB4 0.730 PREDICTED: major histocompatibility complex, class ... LOC100290966 0.725 PREDICTED: hypothetical protein XP_002346811 LOC100294275 0.716 PREDICTED: similar to major histocompatibility comp... HLA-DRB1 0.705 major histocompatibility complex, class II, DR beta... HLA-DRB3 0.705 major histocompatibility complex, class II, DR beta ... LOC100294276 0.700 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.700 PREDICTED: similar to major histocompatibility comp... HLA-DRB5 0.694 major histocompatibility complex, class II, DR beta ... LOC100294276 0.687 PREDICTED: similar to major histocompatibility comp... LOC100294189 0.685 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.685 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.685 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.685 PREDICTED: similar to HLA class II histocompatibili... LOC100294468 0.678 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB4 0.673 major histocompatibility complex, class II, DR beta ... LOC100294036 0.529 PREDICTED: similar to HLA class II histocompatibili... HLA-DPB1 0.527 major histocompatibility complex, class II, DP beta ... HLA-DQB1 0.509 major histocompatibility complex, class II, DQ beta... LOC100293977 0.509 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.509 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.505 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.505 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.505 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.502 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.502 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.502 PREDICTED: similar to major histocompatibility comp... HLA-DOB 0.484 major histocompatibility complex, class II, DO beta p... LOC651845 0.300 PREDICTED: similar to MHC class II antigen LOC100133661 0.284 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.