Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100129520 Sequence: fasta or formatted (993aa) NCBI GI: 169216870
Description:

PREDICTED: hypothetical protein LOC100129520

Not currently referenced in the text

Other entries for this name:
alt mRNA {993aa} PREDICTED: similar to hCG2044193
alt prot {890aa} PREDICTED: similar to hCG2044193
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         49           3
 C cysteine            1.2         12           1
 D aspartate           5.1         51           2
 E glutamate           5.4         54           2
 F phenylalanine       1.6         16           1
 G glycine             5.1         51           2
 H histidine           4.5         45           1
 I isoleucine          1.2         12           1
 K lysine              8.3         82           2
 L leucine             7.9         78           3
 M methionine          5.7         57           2
 N asparagine          3.5         35           2
 P proline            11.4        113           3
 Q glutamine           5.9         59           3
 R arginine            3.7         37           2
 S serine             10.9        108           3
 T threonine           2.4         24           1
 V valine              9.0         89           2
 W tryptophan          1.0         10           2
 Y tyrosine            1.1         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100129520 
LOC100129520          1.000   PREDICTED: similar to hCG2044193 
LOC100129520          0.790   PREDICTED: similar to hCG2044193 
LOC100132015          0.231   PREDICTED: similar to testis expressed sequence 13A...
LOC100132015          0.221   PREDICTED: similar to testis expressed sequence 13A...
LOC100132015          0.219   PREDICTED: similar to testis expressed sequence 13A...
TEX13A                0.043   testis expressed sequence 13A 
TEX13B                0.042   testis expressed 13B 
PRB2                  0.023   proline-rich protein BstNI subfamily 2 
PRG4                  0.022   proteoglycan 4 isoform D 
PRG4                  0.022   proteoglycan 4 isoform C 
PRG4                  0.022   proteoglycan 4 isoform B 
PRG4                  0.022   proteoglycan 4 isoform A 
TTN                   0.014   titin isoform N2-A 
DPCR1                 0.013   diffuse panbronchiolitis critical region 1 protein ...
NACA                  0.013   nascent polypeptide-associated complex alpha subuni...
MDC1                  0.013   mediator of DNA-damage checkpoint 1 
PRB4                  0.012   proline-rich protein BstNI subfamily 4 precursor [Ho...
YLPM1                 0.011   YLP motif containing 1 
NEFH                  0.010   neurofilament, heavy polypeptide 200kDa 
LPP                   0.010   LIM domain containing preferred translocation partner...
REST                  0.009   RE1-silencing transcription factor 
BCL9                  0.009   B-cell CLL/lymphoma 9 
PHC1                  0.009   polyhomeotic 1-like 
PRB1                  0.009   proline-rich protein BstNI subfamily 1 isoform 1 pre...
LDB3                  0.008   LIM domain binding 3 isoform 1 
MUC17                 0.008   mucin 17 
GPRIN1                0.008   G protein-regulated inducer of neurite outgrowth 1 ...
PRB3                  0.008   proline-rich protein BstNI subfamily 3 precursor [H...
LOC100134663          0.008   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press