Guide to the Human Genome
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Name: TEX13B Sequence: fasta or formatted (312aa) NCBI GI: 13775178
Description:

testis expressed 13B

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         36           3
 C cysteine            1.6          5           1
 D aspartate           1.9          6           1
 E glutamate           9.6         30           2
 F phenylalanine       4.2         13           1
 G glycine            10.3         32           3
 H histidine           3.5         11           1
 I isoleucine          2.6          8           2
 K lysine              3.5         11           1
 L leucine            10.9         34           2
 M methionine          1.6          5           1
 N asparagine          2.2          7           1
 P proline             4.8         15           2
 Q glutamine           6.1         19           2
 R arginine            5.4         17           2
 S serine              6.4         20           2
 T threonine           4.8         15           1
 V valine              5.4         17           2
 W tryptophan          2.2          7           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   testis expressed 13B 
TEX13A                0.424   testis expressed sequence 13A 
LOC100129520          0.138   PREDICTED: similar to hCG2044193 
LOC100129520          0.138   PREDICTED: similar to hCG2044193 
LOC100129520          0.138   PREDICTED: hypothetical protein LOC100129520 
LOC100132015          0.131   PREDICTED: similar to testis expressed sequence 13A...
LOC100132015          0.131   PREDICTED: similar to testis expressed sequence 13A...
LOC100132015          0.131   PREDICTED: similar to testis expressed sequence 13A...
RYR1                  0.023   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.023   skeletal muscle ryanodine receptor isoform 1 
OSBP                  0.018   oxysterol binding protein 
MAP6                  0.013   microtubule-associated protein 6 isoform 2 
MAP6                  0.013   microtubule-associated protein 6 isoform 1 
SYVN1                 0.011   synoviolin 1 isoform a 
SYVN1                 0.011   synoviolin 1 isoform b 
LMTK3                 0.011   lemur tyrosine kinase 3 
GOLGA8F               0.011   golgi autoantigen, golgin subfamily a, 8F 
PLEC1                 0.011   plectin 1 isoform 11 
PLEC1                 0.011   plectin 1 isoform 10 
PLEC1                 0.011   plectin 1 isoform 8 
PLEC1                 0.011   plectin 1 isoform 7 
PLEC1                 0.011   plectin 1 isoform 6 
PLEC1                 0.011   plectin 1 isoform 3 
PLEC1                 0.011   plectin 1 isoform 2 
PLEC1                 0.011   plectin 1 isoform 1 
ZSCAN18               0.010   zinc finger and SCAN domain containing 18 isoform 2...
ZSCAN18               0.010   zinc finger and SCAN domain containing 18 isoform 3...
ZSCAN18               0.010   zinc finger and SCAN domain containing 18 isoform 3...
LOC100292262          0.010   PREDICTED: hypothetical protein 
LOC100134702          0.010   PREDICTED: similar to mucin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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