Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DPCR1 Sequence: fasta or formatted (1393aa) NCBI GI: 238624188
Description:

diffuse panbronchiolitis critical region 1 protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0        111           2
 C cysteine            0.4          6           2
 D aspartate           1.7         23           1
 E glutamate          13.8        192           2
 F phenylalanine       1.7         23           1
 G glycine             3.9         55           2
 H histidine           2.9         40           1
 I isoleucine          2.2         31           1
 K lysine              5.8         81           2
 L leucine             4.2         58           3
 M methionine          0.9         13           2
 N asparagine          7.7        107           2
 P proline            10.8        150           2
 Q glutamine           1.9         26           2
 R arginine            4.7         65           2
 S serine              8.4        117           3
 T threonine          18.4        257           3
 V valine              1.9         26           2
 W tryptophan          0.2          3           1
 Y tyrosine            0.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   diffuse panbronchiolitis critical region 1 protein ... 
LOC100294236          0.634   PREDICTED: similar to diffuse panbronchiolitis crit...
MUC2                  0.091   mucin 2 precursor 
PRG4                  0.081   proteoglycan 4 isoform B 
PRG4                  0.081   proteoglycan 4 isoform A 
PRG4                  0.079   proteoglycan 4 isoform D 
PRG4                  0.079   proteoglycan 4 isoform C 
LOC100294501          0.071   PREDICTED: hypothetical protein 
LOC729792             0.071   PREDICTED: hypothetical protein 
LOC729792             0.071   PREDICTED: hypothetical protein 
LOC729792             0.071   PREDICTED: hypothetical protein 
LOC100294238          0.071   PREDICTED: hypothetical protein 
LOC100294204          0.071   PREDICTED: hypothetical protein 
LOC100294136          0.071   PREDICTED: hypothetical protein 
LOC100294091          0.071   PREDICTED: hypothetical protein 
LOC730401             0.071   PREDICTED: hypothetical protein 
LOC100294249          0.070   PREDICTED: hypothetical protein XP_002344067 
MUC12                 0.060   PREDICTED: mucin 12, cell surface associated 
MUC12                 0.060   PREDICTED: mucin 12 
MUC17                 0.056   mucin 17 
ZAN                   0.055   zonadhesin isoform 3 
ZAN                   0.055   zonadhesin isoform 6 
MUC12                 0.051   PREDICTED: mucin 12 
MUC6                  0.046   mucin 6, gastric 
LOC100294420          0.045   PREDICTED: similar to mucin 2 
SRRM2                 0.043   splicing coactivator subunit SRm300 
NACA                  0.043   nascent polypeptide-associated complex alpha subuni...
MUC4                  0.040   mucin 4 isoform a 
MUC5B                 0.039   mucin 5, subtype B, tracheobronchial 
MUC16                 0.035   mucin 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press