Guide to the Human Genome
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Name: LOC100132015 Sequence: fasta or formatted (652aa) NCBI GI: 239752412
Description:

PREDICTED: similar to testis expressed sequence 13A

Not currently referenced in the text

Other entries for this name:
alt prot {714aa} PREDICTED: similar to testis expressed sequence 13A
alt prot {652aa} PREDICTED: similar to testis expressed sequence 13A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         52           3
 C cysteine            2.1         14           1
 D aspartate           3.1         20           1
 E glutamate           8.0         52           2
 F phenylalanine       2.8         18           1
 G glycine             8.1         53           2
 H histidine           3.1         20           2
 I isoleucine          2.3         15           1
 K lysine              3.8         25           2
 L leucine             6.4         42           2
 M methionine          2.6         17           1
 N asparagine          2.5         16           2
 P proline            11.0         72           3
 Q glutamine           8.6         56           3
 R arginine            7.7         50           2
 S serine              8.4         55           2
 T threonine           3.5         23           1
 V valine              4.9         32           2
 W tryptophan          1.7         11           1
 Y tyrosine            1.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to testis expressed sequence 13A... 
LOC100132015          0.998   PREDICTED: similar to testis expressed sequence 13A...
LOC100132015          0.935   PREDICTED: similar to testis expressed sequence 13A...
LOC100129520          0.331   PREDICTED: similar to hCG2044193 
LOC100129520          0.331   PREDICTED: similar to hCG2044193 
LOC100129520          0.331   PREDICTED: hypothetical protein LOC100129520 
TEX13A                0.067   testis expressed sequence 13A 
TEX13B                0.060   testis expressed 13B 
PRB2                  0.034   proline-rich protein BstNI subfamily 2 
PRB1                  0.028   proline-rich protein BstNI subfamily 1 isoform 1 pre...
ENAH                  0.026   enabled homolog isoform a 
ENAH                  0.024   enabled homolog isoform b 
RNASEN                0.022   ribonuclease III, nuclear isoform 2 
RNASEN                0.022   ribonuclease III, nuclear isoform 1 
PRB4                  0.019   proline-rich protein BstNI subfamily 4 precursor [Ho...
FMNL2                 0.019   formin-like 2 
WIPF3                 0.019   WAS/WASL interacting protein family, member 3 [Homo...
RCSD1                 0.018   RCSD domain containing 1 
PRR12                 0.017   proline rich 12 
SETD1B                0.017   SET domain containing 1B 
COL7A1                0.017   alpha 1 type VII collagen precursor 
PRB3                  0.017   proline-rich protein BstNI subfamily 3 precursor [H...
SMARCC1               0.017   SWI/SNF-related matrix-associated actin-dependent r...
ATF5                  0.017   activating transcription factor 5 
MAP1A                 0.016   microtubule-associated protein 1A 
WDR33                 0.016   WD repeat domain 33 isoform 1 
WNK2                  0.015   WNK lysine deficient protein kinase 2 
FMN2                  0.015   formin 2 
FMNL3                 0.015   formin-like 3 isoform 2 
FMNL3                 0.015   formin-like 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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