Guide to the Human Genome
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Name: LPP Sequence: fasta or formatted (612aa) NCBI GI: 5031887
Description:

LIM domain containing preferred translocation partner in lipoma

Referenced in:

Adipose Tissue
LIM Domain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         39           2
 C cysteine            4.1         25           1
 D aspartate           4.1         25           2
 E glutamate           4.7         29           2
 F phenylalanine       2.6         16           1
 G glycine             9.3         57           2
 H histidine           2.8         17           1
 I isoleucine          3.6         22           2
 K lysine              5.1         31           2
 L leucine             5.2         32           2
 M methionine          2.0         12           1
 N asparagine          3.3         20           2
 P proline            15.0         92           6
 Q glutamine           4.6         28           2
 R arginine            3.8         23           2
 S serine              7.5         46           2
 T threonine           6.2         38           2
 V valine              4.9         30           2
 W tryptophan          0.3          2           1
 Y tyrosine            4.6         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM domain containing preferred translocation partner... 
TRIP6                 0.295   thyroid receptor-interacting protein 6 
ZYX                   0.257   zyxin 
ZYX                   0.257   zyxin 
WTIP                  0.169   Wilms tumor 1 interacting protein 
LIMD1                 0.167   LIM domains containing 1 
JUB                   0.161   ajuba isoform 1 
FBLIM1                0.132   filamin-binding LIM protein-1 isoform a 
FBLIM1                0.126   filamin-binding LIM protein-1 isoform c 
JUB                   0.095   ajuba isoform 2 
FBLIM1                0.071   filamin-binding LIM protein-1 isoform b 
LDB3                  0.064   LIM domain binding 3 isoform 1 
LDB3                  0.057   LIM domain binding 3 isoform 2 
FHL3                  0.053   four and a half LIM domains 3 
TGFB1I1               0.051   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.051   transforming growth factor beta 1 induced transcript...
PXN                   0.046   paxillin isoform 1 
PXN                   0.046   paxillin isoform 3 
PXN                   0.046   paxillin isoform 2 
LPXN                  0.046   leupaxin isoform 1 
LPXN                  0.046   leupaxin isoform 2 
FHL2                  0.046   four and a half LIM domains 2 
FHL2                  0.046   four and a half LIM domains 2 
FHL2                  0.046   four and a half LIM domains 2 
FHL2                  0.046   four and a half LIM domains 2 
FHL5                  0.043   activator of cAMP-responsive element modulator (CREM...
ABLIM3                0.043   actin binding LIM protein family, member 3 
ABLIM1                0.040   actin-binding LIM protein 1 isoform c 
ABLIM1                0.040   actin-binding LIM protein 1 isoform b 
ABLIM1                0.040   actin-binding LIM protein 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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