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Search of human proteins with 11277468
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11277468 CD27-binding (Siva) protein isoform 1 [Homo
sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11277468 CD27-binding (Siva) protein isoform 1 [Homo sapiens] 368 e-102
gi|11277470 CD27-binding (Siva) protein isoform 2 [Homo sapiens] 169 9e-43
gi|60279697 keratin associated protein 5-7 [Homo sapiens] 39 0.002
gi|60099478 keratin associated protein 5-6 [Homo sapiens] 39 0.002
gi|60593036 keratin associated protein 5-3 [Homo sapiens] 37 0.007
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 37 0.011
gi|51972220 keratin associated protein 5-2 [Homo sapiens] 36 0.019
gi|60593040 keratin associated protein 5-10 [Homo sapiens] 35 0.025
gi|30520320 ring finger protein 166 [Homo sapiens] 35 0.033
gi|123173777 keratin associated protein 5-8 [Homo sapiens] 35 0.043
gi|123702038 keratin associated protein 5-9 [Homo sapiens] 34 0.057
gi|83367075 metallothionein 1E [Homo sapiens] 33 0.097
gi|157266328 BRCA1 associated RING domain 1 [Homo sapiens] 33 0.097
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 33 0.13
gi|84993742 tripartite motif-containing 71 [Homo sapiens] 33 0.16
gi|94421471 ring finger protein 17 [Homo sapiens] 33 0.16
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 33 0.16
gi|148839376 PWWP domain containing 2 isoform 1 [Homo sapiens] 32 0.22
gi|148839311 PWWP domain containing 2 isoform 2 [Homo sapiens] 32 0.22
gi|71274113 metallothionein 1A [Homo sapiens] 32 0.37
gi|10835230 metallothionein 1G [Homo sapiens] 32 0.37
gi|53292629 keratin associated protein 5-11 [Homo sapiens] 31 0.48
gi|10835085 metallothionein 1H [Homo sapiens] 31 0.63
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 30 0.82
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 30 0.82
gi|4759246 tumor necrosis factor receptor superfamily, member 18... 30 0.82
gi|23238197 tumor necrosis factor receptor superfamily, member 1... 30 0.82
gi|23238194 tumor necrosis factor receptor superfamily, member 1... 30 0.82
gi|10835232 metallothionein 1X [Homo sapiens] 30 0.82
gi|4758392 forkhead box D1 [Homo sapiens] 30 0.82
>gi|11277468 CD27-binding (Siva) protein isoform 1 [Homo sapiens]
Length = 175
Score = 368 bits (945), Expect = e-102
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFEKTKRLLFLGAQAYLDHVWDE 60
MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFEKTKRLLFLGAQAYLDHVWDE
Sbjct: 1 MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFEKTKRLLFLGAQAYLDHVWDE 60
Query: 61 GCAVVHLPESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSGVASIACSSCVRA 120
GCAVVHLPESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSGVASIACSSCVRA
Sbjct: 61 GCAVVHLPESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSGVASIACSSCVRA 120
Query: 121 VDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET 175
VDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET
Sbjct: 121 VDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET 175
>gi|11277470 CD27-binding (Siva) protein isoform 2 [Homo sapiens]
Length = 110
Score = 169 bits (429), Expect = 9e-43
Identities = 93/175 (53%), Positives = 98/175 (56%), Gaps = 65/175 (37%)
Query: 1 MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFEKTKRLLFLGAQAYLDHVWDE 60
MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVF+
Sbjct: 1 MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFD-------------------- 40
Query: 61 GCAVVHLPESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSGVASIACSSCVRA 120
P+G A + DG+ +
Sbjct: 41 --------------PSGVASIACSSCVRAVDGKAV------------------------- 61
Query: 121 VDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET 175
CGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET
Sbjct: 62 ------CGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSCAMFET 110
>gi|60279697 keratin associated protein 5-7 [Homo sapiens]
Length = 165
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 109 VASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVL 166
V + +CSSC K CG C + CG C + GCGS C+ C Y+
Sbjct: 49 VPACSCSSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCSQC------SCYKPCC 102
Query: 167 CTS 169
C+S
Sbjct: 103 CSS 105
Score = 29.3 bits (64), Expect = 1.8
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 127 CGQCERALCGQCVRTCWGCGSVACT-LCGLVDCSDMYEKVLCTSC 170
CG C CG C C GCGS C +C C+SC
Sbjct: 14 CGGCGSG-CGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSC 57
>gi|60099478 keratin associated protein 5-6 [Homo sapiens]
Length = 129
Score = 38.9 bits (89), Expect = 0.002
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 109 VASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVL 166
V + +C+SC K CG C + CG C + GCGS C+ C C Y
Sbjct: 42 VPACSCTSCGSCGGSKGCCGSCGGSKGGCGSCGGSKGGCGSCGCSQCSC--CKPCYCSSG 99
Query: 167 CTS 169
C S
Sbjct: 100 CGS 102
Score = 28.5 bits (62), Expect = 3.1
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 135 CGQCVRTCWGCGSVACT-LCGLVDCSDMYEKVLCTSC 170
CG C C GCGS C +C CTSC
Sbjct: 14 CGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCTSC 50
>gi|60593036 keratin associated protein 5-3 [Homo sapiens]
Length = 238
Score = 37.4 bits (85), Expect = 0.007
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 109 VASIACSSCVRAVDGKAVCGQCE--RALCGQCVRTCWGCGSVAC 150
V + +CSSC K VCG C + CG C + GCGS C
Sbjct: 49 VPACSCSSCGSCGGSKGVCGSCGGCKGGCGSCGGSKGGCGSSCC 92
Score = 29.6 bits (65), Expect = 1.4
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 115 SSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTS 169
SSC V + CG C + +CG + GCGS C+ C Y+ C+S
Sbjct: 89 SSCCVPVCCSSSCGSCGGSKGVCGFRGGSKGGCGSCGCSQC------SCYKPCCCSS 139
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 36.6 bits (83), Expect = 0.011
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 108 GVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLC 167
G + AC SC + G CG C+ CG C + GCGS C CG S V C
Sbjct: 161 GCSKGACGSCGGSKGGCGSCGGCKGG-CGSCGGSKGGCGS-GCGGCG----SGCGVPVCC 214
Query: 168 TSCA 171
SC+
Sbjct: 215 CSCS 218
Score = 34.3 bits (77), Expect = 0.057
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Query: 109 VASIACSSCVRAVDGKAVCGQ--CERALCGQCVRTCWGCGSV-----ACTLCG 154
V + +CSSC GK CG C + CG C + GCGS C CG
Sbjct: 144 VPACSCSSC-----GKGGCGSCGCSKGACGSCGGSKGGCGSCGGCKGGCGSCG 191
Score = 30.0 bits (66), Expect = 1.1
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 109 VASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVL 166
V + +CSSC GK CG + CG C GCGS + G C K
Sbjct: 56 VPTCSCSSC-----GKGGCGSSGGSKGGCGSCGGCKGGCGSCGGSKGGCGSCGG--SKGG 108
Query: 167 CTSC 170
C SC
Sbjct: 109 CGSC 112
Score = 28.5 bits (62), Expect = 3.1
Identities = 20/73 (27%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 99 GQASEADPSGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVA--CTLCGLV 156
G S G C C C C CG C + GCGS C+ C
Sbjct: 186 GCGSCGGSKGGCGSGCGGCGSGCGVPVCCCSCSS--CGSCAGSKGGCGSSCSQCSCCKPC 243
Query: 157 DCSDMYEKVLCTS 169
CS C S
Sbjct: 244 CCSSGCGSSCCQS 256
Score = 27.3 bits (59), Expect = 6.9
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 13/66 (19%)
Query: 97 SLGQASEADPSGVASIACSSCVRAVDGKAVC--------GQCERALCGQCVRTCWGCGSV 148
S G + SG S CV K +C C + CG C GC
Sbjct: 111 SCGGSKGGCGSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSC-----GCSKG 165
Query: 149 ACTLCG 154
AC CG
Sbjct: 166 ACGSCG 171
Score = 26.9 bits (58), Expect = 9.0
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 22/72 (30%)
Query: 107 SGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVAC--------TLCGLVDC 158
SG +C C CG C CG C C G GS C C + C
Sbjct: 7 SGGCGSSCGGCGSG------CGGCGSG-CGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTC 59
Query: 159 SDMYEKVLCTSC 170
S C+SC
Sbjct: 60 S-------CSSC 64
>gi|51972220 keratin associated protein 5-2 [Homo sapiens]
Length = 177
Score = 35.8 bits (81), Expect = 0.019
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 107 SGVASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACT 151
S V + +C+SC K CG C + CG C + GCGS C+
Sbjct: 68 SWVPACSCTSCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGCS 114
Score = 28.9 bits (63), Expect = 2.4
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 115 SSCVRAVDGKAVCGQCERALCGQCVRTCWGCGS-VACTLCGLVDCSDMYEKVLCTSC 170
S C G+ CG CG C +C GCGS +C CTSC
Sbjct: 26 SGCGGCGSGRGGCGSG----CGGCSSSCGGCGSRCYVPVCCCKPVCSWVPACSCTSC 78
Score = 27.7 bits (60), Expect = 5.3
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 112 IACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGS 147
+ C C R CG C + CG C C GCGS
Sbjct: 1 MGCCGCSRGCGSG--CGGCGSS-CGGCGSGCGGCGS 33
Score = 27.7 bits (60), Expect = 5.3
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 127 CGQCERAL---CGQCVRTCWGCGSVACTLCG 154
C C R CG C +C GCGS C CG
Sbjct: 3 CCGCSRGCGSGCGGCGSSCGGCGS-GCGGCG 32
Score = 27.3 bits (59), Expect = 6.9
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 114 CSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVAC 150
C SC + G CG + + C C + GCGS C
Sbjct: 98 CGSCGGSKGGCGSCGCSQSSCCKPCCCSS-GCGSSCC 133
>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
Length = 202
Score = 35.4 bits (80), Expect = 0.025
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 109 VASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVL 166
V + +CSSC K CG C + CG C + GCGS + G C K
Sbjct: 56 VPACSCSSCGSCGGSKGDCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGG--SKGG 113
Query: 167 CTSC 170
C SC
Sbjct: 114 CGSC 117
Score = 32.7 bits (73), Expect = 0.16
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 114 CSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSC 170
C SC + G CG C + CG C + GCGS C+ C C C SC
Sbjct: 104 CGSCGGSKGG---CGSCGGSKGGCGSCGGSKGGCGSCGCSQCNC--CKPCCCSSGCGSC 157
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 35.0 bits (79), Expect = 0.033
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 110 ASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGL 155
A C C+ G C CG+C++ C S C LC L
Sbjct: 29 AQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRL 74
>gi|123173777 keratin associated protein 5-8 [Homo sapiens]
Length = 187
Score = 34.7 bits (78), Expect = 0.043
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 113 ACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTS 169
+C SC + G+ CG + CG C + GCGS C+ C Y+ C+S
Sbjct: 49 SCGSCGGSKGGRGSCGG-SKGDCGSCGGSKGGCGSCGCSQC------SCYKPCCCSS 98
Score = 26.9 bits (58), Expect = 9.0
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 135 CGQCVRTCWGCGSVACT-LCGLVDCSDMYEKVLCTSC 170
CG C C GCGS C +C C+SC
Sbjct: 14 CGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSC 50
>gi|123702038 keratin associated protein 5-9 [Homo sapiens]
Length = 169
Score = 34.3 bits (77), Expect = 0.057
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 106 PSGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLC 153
PS A + C V C C + CG C + GCGS C+ C
Sbjct: 33 PSCCAPVYCCKPVCCCVPACSCSSCGKRGCGSCGGSKGGCGSCGCSQC 80
Score = 30.4 bits (67), Expect = 0.82
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 109 VASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLCGLVDCS 159
V + +CSSC GK CG C + G C CG C+ C CS
Sbjct: 49 VPACSCSSC-----GKRGCGSCGGSKGG-----CGSCGCSQCSCCKPCCCS 89
Score = 29.6 bits (65), Expect = 1.4
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 127 CGQCERALCGQCVRTCWGCGSVACT---LCGLVDCSDMYEKVLCTSC 170
CG C+ + CG C C GCG C C V C C+SC
Sbjct: 14 CGGCDSS-CGSCGSGCRGCGPSCCAPVYCCKPVCC--CVPACSCSSC 57
>gi|83367075 metallothionein 1E [Homo sapiens]
Length = 61
Score = 33.5 bits (75), Expect = 0.097
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 116 SCVRAVDGKAVCG---QCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEKVLCTSC 170
+C A G C +C+ C C ++C C V C C G V C EK C+ C
Sbjct: 4 NCSCATGGSCTCAGSCKCKECKCTSCKKSCCSCCPVGCAKCAQGCV-CKGASEK--CSCC 60
Query: 171 A 171
A
Sbjct: 61 A 61
>gi|157266328 BRCA1 associated RING domain 1 [Homo sapiens]
Length = 777
Score = 33.5 bits (75), Expect = 0.097
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 112 IACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVAC 150
+ CS C + G CE C CV C G G C
Sbjct: 48 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC 86
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 33.1 bits (74), Expect = 0.13
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 108 GVASIACSSCVRAVDG-------KAVCGQC--ERALCGQCVRTCWGCGSVACT 151
GV+ AC SC + G K CG C + CG C + GCGS C+
Sbjct: 103 GVSKGACGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSYGCS 155
Score = 32.0 bits (71), Expect = 0.28
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 19/74 (25%)
Query: 109 VASIACSSCVRAVDGKAVCGQC------------ERALCGQCVRTCWGCGSVACTLCGLV 156
V + +CSSC GK CG C + CG C + GCGS + G
Sbjct: 76 VPACSCSSC-----GKGGCGSCGGSKRGCVSCGVSKGACGSCGGSKGGCGSCGGSKGGCG 130
Query: 157 DCSDMYEKVLCTSC 170
C K C SC
Sbjct: 131 SCGG--SKGGCGSC 142
Score = 26.9 bits (58), Expect = 9.0
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 114 CSSCVRAVDG-KAVCGQCERAL--CGQCVRTCWGCGSVACTLCGLVDC 158
C C G + CG C CG C C GCG C V C
Sbjct: 21 CGGCGSGCGGCGSGCGGCGSGCGGCGGCGSGCAGCGGCGSGCCVPVCC 68
Score = 26.9 bits (58), Expect = 9.0
Identities = 23/79 (29%), Positives = 24/79 (30%), Gaps = 18/79 (22%)
Query: 108 GVASIACSSCVRAVDGKAVCGQCERALCGQ---------CVR--TCWGCGSVACTLC--- 153
G C C G A CG C C CV +C CG C C
Sbjct: 36 GGCGSGCGGCGGCGSGCAGCGGCGSGCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGGS 95
Query: 154 --GLVDCSDMYEKVLCTSC 170
G V C K C SC
Sbjct: 96 KRGCVSCG--VSKGACGSC 112
>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
Length = 868
Score = 32.7 bits (73), Expect = 0.16
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 67 LPESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSGVASIACSSCVRAVDGKAV 126
LP++P+P R+A G P L+R P G CSSC +
Sbjct: 167 LPQAPQP--PAPSRSAPGGPAASPSALLLRR--------PHG-----CSSCDEGNAASSR 211
Query: 127 CGQCERALCGQCVR 140
C C+ LC CVR
Sbjct: 212 CLDCQEHLCDNCVR 225
>gi|94421471 ring finger protein 17 [Homo sapiens]
Length = 1623
Score = 32.7 bits (73), Expect = 0.16
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 89 GPDGRLIRSLGQASEADPSGVASIACSSCVRAVD---GKAVCGQCERALCGQCVRTCWGC 145
GP + +G+ S+ P G A I C+ C R V G QC A C C+ C
Sbjct: 9 GPSRSSYQRMGRKSQ--PWGAAEIQCTRCGRRVSRSSGHHCELQCGHAFCELCLLMTEEC 66
Query: 146 GSVACTLC 153
++ C C
Sbjct: 67 TTIICPDC 74
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 32.7 bits (73), Expect = 0.16
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 117 CVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLCGLVDCSDMYEKVLCTSC 170
CV K CG C + CG C + GCGS + G V C K C SC
Sbjct: 91 CVSCGGSKGGCGSCGGSKGGCGSCGGSKGGCGSCGGSKGGCVSCGG--SKGGCGSC 144
Score = 32.3 bits (72), Expect = 0.22
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 107 SGVASIACSSCVRAVDG-KAVCGQCERALCGQCVRTCWGCGSVACT-LCGLVDCSDMYEK 164
SG C C G + CG C CG C C GCGS C +C
Sbjct: 7 SGGCGSGCGGCGSGCGGCGSGCGGCGSG-CGGCGSGCGGCGSSCCVPICCCKPVCCCVPA 65
Query: 165 VLCTSC 170
C+SC
Sbjct: 66 CSCSSC 71
Score = 32.3 bits (72), Expect = 0.22
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 114 CSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCGSVACTLC 153
C SC + G CG C + CG C + GCGS C+ C
Sbjct: 161 CGSCGGSKGG---CGSCGGSKGGCGSCGGSKGGCGSCGCSQC 199
Score = 29.6 bits (65), Expect = 1.4
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 89 GPDGRLIRSLGQASEADPSGVASIACSSCVRAVDGKAVCGQC--ERALCGQCVRTCWGCG 146
G G + G G + C SC + G CG C + C C + GCG
Sbjct: 86 GSKGGCVSCGGSKGGCGSCGGSKGGCGSCGGSKGG---CGSCGGSKGGCVSCGGSKGGCG 142
Query: 147 SVACTLCGLVDCSDMYEKVLCTSC 170
S + G V C K C SC
Sbjct: 143 SCGGSKGGCVSCGG--SKGGCGSC 164
Score = 28.5 bits (62), Expect = 3.1
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 108 GVASIACS--SCVRAVDGKAVCGQ--CERALCGQCVRTCWGCGSVAC--TLCGLVDCSDM 161
G S CS SC + + CG C+ + C C + GCGS C + C C
Sbjct: 190 GCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSS-GCGSSCCQSSCCKPYCCQSS 248
Query: 162 YEKVLCTS 169
K C+S
Sbjct: 249 CCKPCCSS 256
Score = 28.1 bits (61), Expect = 4.1
Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 107 SGVASIACSSCVRAVDGKAVC---GQCERALCGQCVRTCWGCGSVACTLCGLVDCSDMYE 163
SG S CV K VC C + CG C + G GS + G V C
Sbjct: 40 SGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGG--S 97
Query: 164 KVLCTSC 170
K C SC
Sbjct: 98 KGGCGSC 104
>gi|148839376 PWWP domain containing 2 isoform 1 [Homo sapiens]
Length = 590
Score = 32.3 bits (72), Expect = 0.22
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 60 EGCAVVHLPESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSGVASIACSSCVR 119
E C P PGP APRA R ++ GPD R +R + +P+ A+ S R
Sbjct: 179 EKCKSTLSPPEASPGPPAAPRARR-RLGSGPD-RELRKPEEPENGEPTAAATARRSKRER 236
Query: 120 AVDGKAVCGQCERA 133
+ +A Q R+
Sbjct: 237 REEDRAPAEQVPRS 250
>gi|148839311 PWWP domain containing 2 isoform 2 [Homo sapiens]
Length = 499
Score = 32.3 bits (72), Expect = 0.22
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 60 EGCAVVHLPESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSGVASIACSSCVR 119
E C P PGP APRA R ++ GPD R +R + +P+ A+ S R
Sbjct: 179 EKCKSTLSPPEASPGPPAAPRARR-RLGSGPD-RELRKPEEPENGEPTAAATARRSKRER 236
Query: 120 AVDGKAVCGQCERA 133
+ +A Q R+
Sbjct: 237 REEDRAPAEQVPRS 250
>gi|71274113 metallothionein 1A [Homo sapiens]
Length = 61
Score = 31.6 bits (70), Expect = 0.37
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 116 SCVRAVDGKAVCG---QCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEKVLCTSC 170
+C A G C +C+ C C ++C C ++C C G + C EK C+ C
Sbjct: 4 NCSCATGGSCTCTGSCKCKECKCTSCKKSCCSCCPMSCAKCAQGCI-CKGASEK--CSCC 60
Query: 171 A 171
A
Sbjct: 61 A 61
>gi|10835230 metallothionein 1G [Homo sapiens]
Length = 61
Score = 31.6 bits (70), Expect = 0.37
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 107 SGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEK 164
+GV+ SSC +C+ C C ++C C V C C G + C EK
Sbjct: 9 AGVSCTCASSC-----------KCKECKCTSCKKSCCSCCPVGCAKCAQGCI-CKGASEK 56
Query: 165 VLCTSCA 171
C+ CA
Sbjct: 57 --CSCCA 61
>gi|53292629 keratin associated protein 5-11 [Homo sapiens]
Length = 156
Score = 31.2 bits (69), Expect = 0.48
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 99 GQASEADPSGVASIACSSCVRAVDGKAVC---GQCERALCGQCVRTCWGCGSVACTL--C 153
G S SG S CV K VC C + CG C + GCGS + C
Sbjct: 18 GSGSGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGSCGGSKGGCGSCGSSKGGC 77
Query: 154 GLVDCS 159
G CS
Sbjct: 78 GSCGCS 83
Score = 28.5 bits (62), Expect = 3.1
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 102 SEADPSGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVAC-TLCGLVDC-- 158
S G + C SC + G CG + C C + GCGS C + C C
Sbjct: 55 SSCGSCGGSKGGCGSCGSSKGGCGSCGCSQSNCCKPCCSSS-GCGSFCCQSSCSKPCCCQ 113
Query: 159 SDMYEKVLCTSC 170
S + C C
Sbjct: 114 SSCCQSSCCKPC 125
>gi|10835085 metallothionein 1H [Homo sapiens]
Length = 61
Score = 30.8 bits (68), Expect = 0.63
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 116 SCVRAVDGKAVCG---QCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEKVLCTSC 170
+C G C +C++ C C ++C C + C C G + C EK C+ C
Sbjct: 4 NCSCEAGGSCACAGSCKCKKCKCTSCKKSCCSCCPLGCAKCAQGCI-CKGASEK--CSCC 60
Query: 171 A 171
A
Sbjct: 61 A 61
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 30.4 bits (67), Expect = 0.82
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 68 PESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSG 108
PE P P P AP ++ GP RL S + S P G
Sbjct: 69 PEPPPPPPPAAPHVLGARVAAGPTHRLSASHSRVSSRGPVG 109
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 30.4 bits (67), Expect = 0.82
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 68 PESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSG 108
PE P P P AP ++ GP RL S + S P G
Sbjct: 69 PEPPPPPPPAAPHVLGARVAAGPTHRLSASHSRVSSRGPVG 109
>gi|4759246 tumor necrosis factor receptor superfamily, member 18
isoform 1 precursor [Homo sapiens]
Length = 241
Score = 30.4 bits (67), Expect = 0.82
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 21/81 (25%)
Query: 75 PTGAPRAARGQMLIGP--DGRLIRSLGQASEADPSGVASIACSSCVRAVDGKAVCGQCER 132
PTG P G++L+G D R R + + C R G+ C + +
Sbjct: 28 PTGGPGCGPGRLLLGTGTDARCCR---------------VHTTRCCRDYPGEECCSEWD- 71
Query: 133 ALCGQCVRTCWGCGSVACTLC 153
C CV+ + CG CT C
Sbjct: 72 --C-MCVQPEFHCGDPCCTTC 89
>gi|23238197 tumor necrosis factor receptor superfamily, member 18
isoform 3 precursor [Homo sapiens]
Length = 234
Score = 30.4 bits (67), Expect = 0.82
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 21/81 (25%)
Query: 75 PTGAPRAARGQMLIGP--DGRLIRSLGQASEADPSGVASIACSSCVRAVDGKAVCGQCER 132
PTG P G++L+G D R R + + C R G+ C + +
Sbjct: 28 PTGGPGCGPGRLLLGTGTDARCCR---------------VHTTRCCRDYPGEECCSEWD- 71
Query: 133 ALCGQCVRTCWGCGSVACTLC 153
C CV+ + CG CT C
Sbjct: 72 --C-MCVQPEFHCGDPCCTTC 89
>gi|23238194 tumor necrosis factor receptor superfamily, member 18
isoform 2 precursor [Homo sapiens]
Length = 255
Score = 30.4 bits (67), Expect = 0.82
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 21/81 (25%)
Query: 75 PTGAPRAARGQMLIGP--DGRLIRSLGQASEADPSGVASIACSSCVRAVDGKAVCGQCER 132
PTG P G++L+G D R R + + C R G+ C + +
Sbjct: 28 PTGGPGCGPGRLLLGTGTDARCCR---------------VHTTRCCRDYPGEECCSEWD- 71
Query: 133 ALCGQCVRTCWGCGSVACTLC 153
C CV+ + CG CT C
Sbjct: 72 --C-MCVQPEFHCGDPCCTTC 89
>gi|10835232 metallothionein 1X [Homo sapiens]
Length = 61
Score = 30.4 bits (67), Expect = 0.82
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 15/67 (22%)
Query: 107 SGVASIACSSCVRAVDGKAVCGQCERALCGQCVRTCWGCGSVACTLC--GLVDCSDMYEK 164
S V S AC+ G C +C+ C C ++C C V C C G + C +K
Sbjct: 8 SPVGSCACA-------GSCKCKECK---CTSCKKSCCSCCPVGCAKCAQGCI-CKGTSDK 56
Query: 165 VLCTSCA 171
C+ CA
Sbjct: 57 --CSCCA 61
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 30.4 bits (67), Expect = 0.82
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 70 SPKPGPTGAPRA-------ARGQMLIGPDGRLIRSLGQASEADPSGVASIA 113
SP P P AP A Q +GP L RSL A+ A S V+S A
Sbjct: 391 SPSPSPVAAPPAPGSSGGGCAAQAAVGPAAALTRSLVAAAAAAASSVSSSA 441
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,912,978
Number of Sequences: 37866
Number of extensions: 401886
Number of successful extensions: 2301
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 2145
Number of HSP's gapped (non-prelim): 167
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.