Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MT1A Sequence: fasta or formatted (61aa) NCBI GI: 71274113
Description:

metallothionein 1A

Referenced in:

Metallothioneins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2          5           1
 C cysteine           32.8         20           2
 D aspartate           1.6          1           1
 E glutamate           3.3          2           1
 F phenylalanine       0.0          0           0
 G glycine             8.2          5           2
 H histidine           0.0          0           0
 I isoleucine          1.6          1           1
 K lysine             13.1          8           2
 L leucine             0.0          0           0
 M methionine          3.3          2           1
 N asparagine          1.6          1           1
 P proline             3.3          2           1
 Q glutamine           1.6          1           1
 R arginine            0.0          0           0
 S serine             14.8          9           1
 T threonine           6.6          4           1
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   metallothionein 1A 
MT1E                  0.952   metallothionein 1E 
MT2A                  0.913   metallothionein 2A 
MT1H                  0.905   metallothionein 1H 
MT1G                  0.897   metallothionein 1G 
MT1F                  0.889   metallothionein 1F 
MT1B                  0.889   metallothionein 1B 
MT1X                  0.865   metallothionein 1X 
MT1M                  0.857   metallothionein 1M 
MT3                   0.659   metallothionein 3 
MT4                   0.627   metallothionein 4 
KRTAP5-3              0.198   keratin associated protein 5-3 
KRTAP5-6              0.183   keratin associated protein 5-6 
KRTAP5-8              0.183   keratin associated protein 5-8 
KRTAP5-2              0.183   keratin associated protein 5-2 
KRTAP5-7              0.175   keratin associated protein 5-7 
KRTAP5-10             0.175   keratin associated protein 5-10 
KRTAP5-9              0.175   keratin associated protein 5-9 
KRTAP5-1              0.175   keratin associated protein 5-1 
KRTAP5-5              0.167   keratin associated protein 5-5 
KRTAP5-4              0.167   keratin associated protein 5-4 
KRTAP5-11             0.167   keratin associated protein 5-11 
KRTAP4-3              0.159   keratin associated protein 4-3 
KRTAP4-5              0.143   keratin associated protein 4-5 
KRTAP10-1             0.135   keratin associated protein 10-1 
KRTAP4-9              0.135   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-9              0.135   keratin associated protein 4-9 
KRTAP10-9             0.135   keratin associated protein 10-9 
KRTAP10-5             0.135   keratin associated protein 10-5 
KRTAP10-2             0.135   keratin associated protein 10-2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press