Guide to the Human Genome
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Name: LOC100289230 Sequence: fasta or formatted (274aa) NCBI GI: 239742631
Description:

PREDICTED: hypothetical protein XP_002342600

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         34           2
 C cysteine            1.8          5           1
 D aspartate           1.1          3           1
 E glutamate           2.9          8           1
 F phenylalanine       0.7          2           1
 G glycine             8.8         24           4
 H histidine           3.6         10           1
 I isoleucine          1.1          3           1
 K lysine              4.0         11           2
 L leucine             8.4         23           1
 M methionine          1.8          5           1
 N asparagine          1.8          5           1
 P proline            15.0         41           7
 Q glutamine           1.8          5           1
 R arginine           15.0         41           2
 S serine             12.4         34           2
 T threonine           1.8          5           1
 V valine              3.6         10           1
 W tryptophan          1.8          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342600 
LOC100292845          1.000   PREDICTED: hypothetical protein 
LOC100290989          0.212   PREDICTED: hypothetical protein XP_002346732 
SAMD1                 0.063   sterile alpha motif domain containing 1 
FLJ22184              0.057   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.057   PREDICTED: hypothetical protein FLJ22184 
WIPF1                 0.055   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.055   WAS/WASL interacting protein family, member 1 
WIPF3                 0.054   WAS/WASL interacting protein family, member 3 [Homo...
WIPF2                 0.054   WIRE protein 
FLJ22184              0.054   PREDICTED: hypothetical protein LOC80164 
MLL4                  0.054   myeloid/lymphoid or mixed-lineage leukemia 4 
CASKIN1               0.052   CASK interacting protein 1 
ABL1                  0.052   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.052   c-abl oncogene 1, receptor tyrosine kinase isoform b...
PCLO                  0.050   piccolo isoform 2 
PCLO                  0.050   piccolo isoform 1 
SRRM1                 0.050   serine/arginine repetitive matrix 1 
PRB2                  0.048   proline-rich protein BstNI subfamily 2 
MAST3                 0.048   microtubule associated serine/threonine kinase 3 [H...
SYNPO                 0.046   synaptopodin isoform A 
PRB1                  0.046   proline-rich protein BstNI subfamily 1 isoform 1 pre...
C14orf4               0.046   chromosome 14 open reading frame 4 
WBP11                 0.046   WW domain binding protein 11 
MBD6                  0.046   methyl-CpG binding domain protein 6 
TBKBP1                0.046   TBK1 binding protein 1 
C9orf75               0.046   hypothetical protein LOC286262 isoform 2 
C9orf75               0.046   hypothetical protein LOC286262 isoform 1 
PRR12                 0.046   proline rich 12 
CABIN1                0.046   calcineurin binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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