TRIM71 36547

Name: TRIM71	Sequence: fasta or formatted (868aa)		NCBI GI: 84993742
Description: tripartite motif-containing 71		Referenced in: Tripartite Motif Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.4 82 5 C cysteine 3.0 26 1 D aspartate 5.1 44 2 E glutamate 5.0 43 2 F phenylalanine 4.6 40 1 G glycine 10.0 87 6 H histidine 3.8 33 2 I isoleucine 3.5 30 2 K lysine 4.0 35 2 L leucine 9.2 80 3 M methionine 1.3 11 1 N asparagine 3.2 28 2 P proline 6.5 56 3 Q glutamine 5.6 49 2 R arginine 6.1 53 2 S serine 7.8 68 5 T threonine 2.9 25 1 V valine 7.1 62 3 W tryptophan 0.5 4 1 Y tyrosine 1.4 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 71 TRIM3 0.170 tripartite motif-containing 3 TRIM3 0.170 tripartite motif-containing 3 TRIM2 0.164 tripartite motif-containing 2 isoform 2 TRIM2 0.164 tripartite motif-containing 2 isoform 1 TRIM45 0.072 tripartite motif-containing 45 isoform 1 TRIM45 0.066 tripartite motif-containing 45 isoform 2 TRIM28 0.048 tripartite motif-containing 28 protein TRIM24 0.048 transcriptional intermediary factor 1 alpha isoform ... TRIM24 0.048 transcriptional intermediary factor 1 alpha isoform ... TRIM33 0.045 tripartite motif-containing 33 protein isoform beta ... TRIM33 0.045 tripartite motif-containing 33 protein isoform alpha... TRIM66 0.031 tripartite motif-containing 66 TRIM67 0.030 tripartite motif-containing 67 TRIM32 0.028 tripartite motif-containing 32 TRIM32 0.028 tripartite motif-containing 32 TRIM56 0.026 tripartite motif-containing 56 TRIM47 0.025 tripartite motif-containing 47 NHLRC1 0.025 NHL repeat containing 1 NHLRC3 0.024 NHL repeat containing 3 isoform a MID2 0.023 midline 2 isoform 2 MID2 0.023 midline 2 isoform 1 TRIM36 0.023 tripartite motif-containing 36 isoform 1 TRIM63 0.021 muscle specific ring finger protein 1 TRIM46 0.020 tripartite motif-containing 46 TRIM42 0.020 tripartite motif-containing 42 TRIM9 0.019 tripartite motif protein 9 isoform 2 TRIM9 0.019 tripartite motif protein 9 isoform 1 PAM 0.017 peptidylglycine alpha-amidating monooxygenase isofor... NHLRC3 0.017 NHL repeat containing 3 isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.