Guide to the Human Genome
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Name: RNF17 Sequence: fasta or formatted (1623aa) NCBI GI: 94421471
Description:

ring finger protein 17

Referenced in:

Additional Interaction Domain Families
Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         87           2
 C cysteine            2.9         47           1
 D aspartate           5.5         90           2
 E glutamate           9.2        150           3
 F phenylalanine       3.0         48           2
 G glycine             3.6         59           2
 H histidine           2.2         36           2
 I isoleucine          6.3        102           2
 K lysine              7.5        122           3
 L leucine             9.9        161           2
 M methionine          2.5         40           1
 N asparagine          4.7         76           2
 P proline             5.7         92           4
 Q glutamine           4.3         70           2
 R arginine            3.9         63           2
 S serine              7.1        116           3
 T threonine           5.0         81           3
 V valine              6.9        112           2
 W tryptophan          1.2         20           1
 Y tyrosine            3.1         51           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 17 
TDRD1                 0.029   tudor domain containing 1 
TDRKH                 0.014   tudor and KH domain containing isoform a 
TDRKH                 0.014   tudor and KH domain containing isoform b 
TDRKH                 0.014   tudor and KH domain containing isoform a 
TDRKH                 0.014   tudor and KH domain containing isoform a 
TDRD6                 0.014   tudor domain containing 6 
LOC100129278          0.012   PREDICTED: similar to tudor domain containing 1 [Ho...
LOC100129278          0.012   PREDICTED: similar to tudor domain containing 1 [Ho...
LOC100129278          0.012   PREDICTED: similar to tudor domain containing 1 [Ho...
TDRD7                 0.012   tudor domain containing 7 
AKAP1                 0.011   A-kinase anchor protein 1 precursor 
SND1                  0.010   staphylococcal nuclease domain containing 1 
TDRD5                 0.009   tudor domain containing 5 
TDRD9                 0.008   tudor domain containing 9 
TRIM64                0.005   tripartite motif-containing 64 
TRIML1                0.005   tripartite motif family-like 1 
RNF208                0.005   ring finger protein 208 
SPRYD5                0.004   SPRY domain containing 5 
PHLDB1                0.004   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.004   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.004   pleckstrin homology-like domain, family B, member 1 ...
RNF168                0.004   ring finger protein 168 
STK31                 0.004   serine/threonine kinase 31 isoform b 
STK31                 0.004   serine/threonine kinase 31 isoform a 
STK31                 0.004   serine/threonine kinase 31 isoform b 
ZNF668                0.003   zinc finger protein 668 
CAND2                 0.003   TBP-interacting protein isoform 1 
BDP1                  0.003   transcription factor-like nuclear regulator 
RNF222                0.003   ring finger protein 222 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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