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Search of human proteins with 111607465
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|111607465 IQ motif containing J isoform CaMBPv1 [Homo
sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|111607465 IQ motif containing J isoform CaMBPv1 [Homo sapiens] 321 2e-88
gi|111607426 IQ motif containing J isoform CaMBPv2 [Homo sapiens] 195 2e-50
gi|55749678 ninein-like [Homo sapiens] 33 0.079
gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens] 31 0.51
gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens] 31 0.51
gi|4506341 ATP-binding cassette, sub-family D, member 3 isoform ... 30 0.67
gi|27735067 hypothetical protein LOC126353 [Homo sapiens] 30 0.87
gi|33457316 pleckstrin homology domain containing, family O memb... 30 1.1
gi|153791171 family with sequence similarity 156, member B [Homo... 30 1.1
gi|31543441 family with sequence similarity 156, member A [Homo ... 30 1.1
gi|32698714 hypothetical protein LOC284058 [Homo sapiens] 29 1.5
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 29 1.5
gi|239582765 ral guanine nucleotide dissociation stimulator-like... 29 1.9
gi|15055549 fibroblast growth factor 5 isoform 2 precursor [Homo... 29 1.9
gi|73486655 fibroblast growth factor 5 isoform 1 precursor [Homo... 29 1.9
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 29 1.9
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 29 1.9
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 29 1.9
gi|116517292 cut-like 2 [Homo sapiens] 28 2.5
gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens] 28 2.5
gi|13540600 nudE nuclear distribution gene E homolog (A. nidulan... 28 2.5
gi|71284108 nudE nuclear distribution gene E homolog (A. nidulan... 28 2.5
gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens] 28 3.3
gi|12083581 phosphoinositide-specific phospholipase C beta 1 iso... 28 3.3
gi|33356544 phosphoinositide-specific phospholipase C beta 1 iso... 28 3.3
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 28 3.3
gi|188497718 catenin, alpha 3 [Homo sapiens] 28 3.3
gi|188497716 catenin, alpha 3 [Homo sapiens] 28 3.3
gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo s... 28 3.3
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 28 3.3
>gi|111607465 IQ motif containing J isoform CaMBPv1 [Homo sapiens]
Length = 159
Score = 321 bits (822), Expect = 2e-88
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MRLEELKRLQNPLEQVNDGKYSFENHQLAMDAENNIEKYPLNLQPLESKVKIIQRAWREY 60
MRLEELKRLQNPLEQVNDGKYSFENHQLAMDAENNIEKYPLNLQPLESKVKIIQRAWREY
Sbjct: 1 MRLEELKRLQNPLEQVNDGKYSFENHQLAMDAENNIEKYPLNLQPLESKVKIIQRAWREY 60
Query: 61 LQRQEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDK 120
LQRQEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDK
Sbjct: 61 LQRQEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDK 120
Query: 121 LPGGRKVILLYLDQLARPTGFIHTLKEPQIERLGFLTLQ 159
LPGGRKVILLYLDQLARPTGFIHTLKEPQIERLGFLTLQ
Sbjct: 121 LPGGRKVILLYLDQLARPTGFIHTLKEPQIERLGFLTLQ 159
>gi|111607426 IQ motif containing J isoform CaMBPv2 [Homo sapiens]
Length = 112
Score = 195 bits (495), Expect = 2e-50
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MRLEELKRLQNPLEQVNDGKYSFENHQLAMDAENNIEKYPLNLQPLESKVKIIQRAWREY 60
MRLEELKRLQNPLEQVNDGKYSFENHQLAMDAENNIEKYPLNLQPLESKVKIIQRAWREY
Sbjct: 1 MRLEELKRLQNPLEQVNDGKYSFENHQLAMDAENNIEKYPLNLQPLESKVKIIQRAWREY 60
Query: 61 LQRQEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSSTP 97
LQRQEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSSTP
Sbjct: 61 LQRQEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSSTP 97
>gi|55749678 ninein-like [Homo sapiens]
Length = 1382
Score = 33.5 bits (75), Expect = 0.079
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 4 EELKRLQNPLEQVNDGKYSFENHQLAMDAENNIEKYPLNLQPLESKVKIIQRAWREYLQR 63
EEL+ L N L+Q DGK S E QL + + P L ++VK +AW Y Q
Sbjct: 236 EELEDLFNKLDQDGDGKVSLEEFQLGLFSHE-----PALLLESSTRVK-PSKAWSHY-QV 288
Query: 64 QEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFA 99
E G + + S+ S L SS+ + + D + FA
Sbjct: 289 PEESGCHTTTTSSLVS--LCSSLRLFSSIDDGSGFA 322
>gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]
Length = 1726
Score = 30.8 bits (68), Expect = 0.51
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 9 LQNPLEQVNDGKYSFENHQLAMDAENNIEKYPLNLQPL-ESKVKIIQRAWREYLQRQEPL 67
L N EQ+N G + ENHQ+A E P+ ++PL ES K+ + L++++P
Sbjct: 1136 LANSGEQLN-GSHELENHQIADSMEFGFLPNPVAVKPLTESPFKV--HLEKLSLRQRKPD 1192
Query: 68 GKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGD 119
+ + S+V ++ P V IH Y W ++ GD
Sbjct: 1193 EDMKLYQTPLELKLKHSTVHVDELCPLIVP--NLGVAVIHDYADWVKEASGD 1242
>gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]
Length = 1800
Score = 30.8 bits (68), Expect = 0.51
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 9 LQNPLEQVNDGKYSFENHQLAMDAENNIEKYPLNLQPL-ESKVKIIQRAWREYLQRQEPL 67
L N EQ+N G + ENHQ+A E P+ ++PL ES K+ + L++++P
Sbjct: 1136 LANSGEQLN-GSHELENHQIADSMEFGFLPNPVAVKPLTESPFKV--HLEKLSLRQRKPD 1192
Query: 68 GKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGD 119
+ + S+V ++ P V IH Y W ++ GD
Sbjct: 1193 EDMKLYQTPLELKLKHSTVHVDELCPLIVP--NLGVAVIHDYADWVKEASGD 1242
>gi|4506341 ATP-binding cassette, sub-family D, member 3 isoform a
[Homo sapiens]
Length = 659
Score = 30.4 bits (67), Expect = 0.67
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 34 NNIEKYPLNLQPLESKVKIIQRAWREYLQ-----RQEPLGKRSPSPPSVSS---EKLSSS 85
NN KY LN L +V++ + + EYLQ + L R +P + + EK +S
Sbjct: 140 NNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNS 199
Query: 86 VSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDKLPGGRKVIL----LYLDQLARPTGF 141
V ++ +S+ S PF I YI + G + P L L+L +L RP G
Sbjct: 200 V-VDLYSNLSKPFL-----DIVLYIFKLTSAIGAQGPASMMAYLVVSGLFLTRLRRPIGK 253
Query: 142 IHTLKEPQIE 151
+ T+ E + E
Sbjct: 254 M-TITEQKYE 262
>gi|27735067 hypothetical protein LOC126353 [Homo sapiens]
Length = 679
Score = 30.0 bits (66), Expect = 0.87
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 41 LNLQPLESKVKIIQRAWREYLQRQEPLGKR----------SPSPPSVSSEKLSSSVSMN- 89
L LQ +S +++R L+R++ + + SP+P S + SS +
Sbjct: 536 LRLQKSQSS-DLLERERESVLRREQEVAEERRNALFPEVFSPTPDENSDQNSRSSSQASG 594
Query: 90 ---TFSDSSTPFARAPVGKIHPYISWRLQSPGDKLPGGRK 126
++S S +PF +P+ +H ++W ++ P D P G++
Sbjct: 595 ITGSYSVSESPFF-SPI-HLHSNVAWTVEDPVDSAPPGQR 632
>gi|33457316 pleckstrin homology domain containing, family O member
2 [Homo sapiens]
Length = 490
Score = 29.6 bits (65), Expect = 1.1
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 13/62 (20%)
Query: 64 QEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSSTPF-----ARAPVGKIHP---YISWRLQ 115
+ P+G+R+P+P S SSE VS + DS TP + P + P +SW
Sbjct: 223 ETPVGERAPTPVSASSE-----VSPESQEDSETPAEEDSGSEQPPNSVLPDKLKVSWENP 277
Query: 116 SP 117
SP
Sbjct: 278 SP 279
>gi|153791171 family with sequence similarity 156, member B [Homo
sapiens]
Length = 213
Score = 29.6 bits (65), Expect = 1.1
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 65 EPLGKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDKLPGG 124
+PL KR+P+ PS SS ++ S + S ++ P+ + SPG PG
Sbjct: 2 DPLQKRNPASPSKSSPMTAAETSQEGPAPSQPSYSEQPM------MGLSNLSPG---PGP 52
Query: 125 RKVILLYLDQLARPTGFIHTLKEPQIERLGFL 156
+ + L L + TL+E + ERL FL
Sbjct: 53 SQAVPLPEGLLRQRYREEKTLEERRWERLEFL 84
>gi|31543441 family with sequence similarity 156, member A [Homo
sapiens]
Length = 213
Score = 29.6 bits (65), Expect = 1.1
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 65 EPLGKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDKLPGG 124
+PL KR+P+ PS SS ++ S + S ++ P+ + SPG PG
Sbjct: 2 DPLQKRNPASPSKSSPMTAAETSQEGPAPSQPSYSEQPM------MGLSNLSPG---PGP 52
Query: 125 RKVILLYLDQLARPTGFIHTLKEPQIERLGFL 156
+ + L L + TL+E + ERL FL
Sbjct: 53 SQAVPLPEGLLRQRYREEKTLEERRWERLEFL 84
>gi|32698714 hypothetical protein LOC284058 [Homo sapiens]
Length = 1105
Score = 29.3 bits (64), Expect = 1.5
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 55 RAWREYLQRQEP-LGKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPV 103
R++R R P LG +PS P +S +SSS S++ +S +P R+P+
Sbjct: 946 RSYRSSDGRTTPQLGSANPSTPQPASPDVSSSHSLSEYSHGQSP--RSPI 993
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 29.3 bits (64), Expect = 1.5
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 72 PSPPSVSSEK---LSSSVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDKLPGGRK 126
P PPS+ + L + S+NT DS TP K HP W+L LP K
Sbjct: 851 PCPPSLIIGRDGDLWPAYSLNTTKDSQTPH------KAHPIWKWQLGGSAIPLPPSHK 902
>gi|239582765 ral guanine nucleotide dissociation stimulator-like 3
isoform 1 [Homo sapiens]
Length = 716
Score = 28.9 bits (63), Expect = 1.9
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 46 LESKVKIIQRAWREYLQRQEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFAR-APVG 104
+ ++ + +R + + + SP PS + L S S++ S S+P +R AP G
Sbjct: 515 IRRRISLTKRLSAKLAREKSSSPSGSPGDPSSPTSSLCISPSVSPGSPPSSPRSRDAPAG 574
Query: 105 KIHPYISWRLQSPGDKLPGGRKVILLYLDQLARPTGFIHTLKEPQI 150
P S Q P KLP L LD L P F L P+I
Sbjct: 575 S--PPASPGPQGPSTKLP-------LSLD-LPSPRPFALPLGSPRI 610
>gi|15055549 fibroblast growth factor 5 isoform 2 precursor [Homo
sapiens]
Length = 123
Score = 28.9 bits (63), Expect = 1.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 52 IIQRAWREYLQRQEPLGKRSPSP----PSVSSEKLSSSVSMNTFSDSSTPFA 99
+I AW +R P G+ P+ P SS + SSS +M++ S SS+P A
Sbjct: 14 LILSAWAHGEKRLAPKGQPGPAATDRNPRGSSSRQSSSSAMSSSSASSSPAA 65
>gi|73486655 fibroblast growth factor 5 isoform 1 precursor [Homo
sapiens]
Length = 268
Score = 28.9 bits (63), Expect = 1.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 52 IIQRAWREYLQRQEPLGKRSPSP----PSVSSEKLSSSVSMNTFSDSSTPFA 99
+I AW +R P G+ P+ P SS + SSS +M++ S SS+P A
Sbjct: 14 LILSAWAHGEKRLAPKGQPGPAATDRNPRGSSSRQSSSSAMSSSSASSSPAA 65
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 65 EPL-GKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAP 102
EPL SP PP++SS SSS S ++FS SS+ + +P
Sbjct: 837 EPLMSAASPGPPTLSSSS-SSSSSSSSFSSSSSSSSPSP 874
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 65 EPL-GKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAP 102
EPL SP PP++SS SSS S ++FS SS+ + +P
Sbjct: 1038 EPLMSAASPGPPTLSSSS-SSSSSSSSFSSSSSSSSPSP 1075
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 65 EPL-GKRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAP 102
EPL SP PP++SS SSS S ++FS SS+ + +P
Sbjct: 1038 EPLMSAASPGPPTLSSSS-SSSSSSSSFSSSSSSSSPSP 1075
>gi|116517292 cut-like 2 [Homo sapiens]
Length = 1486
Score = 28.5 bits (62), Expect = 2.5
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 69 KRSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDKLPGGRKVI 128
+ SPSPP +E SS + S S+ + P G+ +S ++ S G + PGG + I
Sbjct: 982 RSSPSPPPSPTEPEKSSQEPLSLSLESSKENQQPEGRSSSSLSGKMYS-GSQAPGGIQEI 1040
Query: 129 LLYLDQL 135
+ +L
Sbjct: 1041 VAMSPEL 1047
>gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]
Length = 3565
Score = 28.5 bits (62), Expect = 2.5
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 45 PLESKVKIIQRAWREYLQRQEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSS 95
P+ S V + W+ Y E LGKR P+ +V +SS TFS++S
Sbjct: 3347 PVPSDVFFVNSLWKGYY---EYLGKRQPATLTVDWFNATSSKVNATFSEAS 3394
>gi|13540600 nudE nuclear distribution gene E homolog (A.
nidulans)-like 1 isoform B [Homo sapiens]
Length = 345
Score = 28.5 bits (62), Expect = 2.5
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 37 EKYPLNLQPLESKVKIIQRAWREYLQRQEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSST 96
E +++Q L+ + + +++ ++QE K +PS P++ EK+ S+V +S
Sbjct: 161 ESLLVSVQRLKDEARDLRQELAVRERQQEVTRKSAPSSPTLDCEKMDSAV------QASL 214
Query: 97 PFARAPVGK 105
PVGK
Sbjct: 215 SLPATPVGK 223
>gi|71284108 nudE nuclear distribution gene E homolog (A.
nidulans)-like 1 isoform A [Homo sapiens]
Length = 328
Score = 28.5 bits (62), Expect = 2.5
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 37 EKYPLNLQPLESKVKIIQRAWREYLQRQEPLGKRSPSPPSVSSEKLSSSVSMNTFSDSST 96
E +++Q L+ + + +++ ++QE K +PS P++ EK+ S+V +S
Sbjct: 161 ESLLVSVQRLKDEARDLRQELAVRERQQEVTRKSAPSSPTLDCEKMDSAV------QASL 214
Query: 97 PFARAPVGK 105
PVGK
Sbjct: 215 SLPATPVGK 223
>gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens]
Length = 1807
Score = 28.1 bits (61), Expect = 3.3
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 25 NHQLAMDAENNIEKYP--LNLQPLESKVKIIQRAWREYLQRQEPLGKRSPSPPSVSSEKL 82
N M EN + + +N PL+ + A R R L K S S P+ S+ K
Sbjct: 1205 NTSWLMSLENPLSPFSSDINNMPLQELSNALMAAERFKEHRDTALYK-SLSVPAASTAKP 1263
Query: 83 SSSVSMNTFSDSSTPFARAPVGKIHPYISW 112
NT + S+ + + G++H +SW
Sbjct: 1264 PPLPRSNTVASFSSLYQSSCQGQLHRSVSW 1293
>gi|12083581 phosphoinositide-specific phospholipase C beta 1
isoform a [Homo sapiens]
Length = 1216
Score = 28.1 bits (61), Expect = 3.3
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 22 SFENHQLAMDAENNIEKY------------PLNLQPLESKVKIIQRAWREYLQRQEPLGK 69
SFENH + + + +Y PL PLES V + Y + K
Sbjct: 410 SFENHVDSPKQQAKMAEYCRLIFGDALLMEPLEKYPLESGVPLPSPMDLMYKILVKNKKK 469
Query: 70 RSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVG 104
S +KLS S NT+SDSS+ F + G
Sbjct: 470 SHKSSEGSGKKKLSEQAS-NTYSDSSSMFEPSSPG 503
>gi|33356544 phosphoinositide-specific phospholipase C beta 1
isoform b [Homo sapiens]
Length = 1173
Score = 28.1 bits (61), Expect = 3.3
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 22 SFENHQLAMDAENNIEKY------------PLNLQPLESKVKIIQRAWREYLQRQEPLGK 69
SFENH + + + +Y PL PLES V + Y + K
Sbjct: 410 SFENHVDSPKQQAKMAEYCRLIFGDALLMEPLEKYPLESGVPLPSPMDLMYKILVKNKKK 469
Query: 70 RSPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVG 104
S +KLS S NT+SDSS+ F + G
Sbjct: 470 SHKSSEGSGKKKLSEQAS-NTYSDSSSMFEPSSPG 503
>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
Length = 1183
Score = 28.1 bits (61), Expect = 3.3
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 28 LAMDAENNIEKYPLNLQPLESKVKIIQRAWREYLQRQEPLGKRSPSPPSVSSEKLSSSVS 87
+ ++ EN E+ P + + + K ++ Q +WR +L+ ++ SP P++ S L V
Sbjct: 853 IVLEKENTHERSPSSPKGEKEKSRLRQGSWRAFLKSKD---AGSPKKPTLVSLPLGPEVL 909
Query: 88 MNTFSDS 94
+DS
Sbjct: 910 SPAETDS 916
>gi|188497718 catenin, alpha 3 [Homo sapiens]
Length = 895
Score = 28.1 bits (61), Expect = 3.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 85 SVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDK 120
+V M+ + + ++P G HP + WR+++P K
Sbjct: 821 TVKMSYIASTKIIRIQSPAGPRHPVVMWRMKAPAKK 856
>gi|188497716 catenin, alpha 3 [Homo sapiens]
Length = 895
Score = 28.1 bits (61), Expect = 3.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 85 SVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDK 120
+V M+ + + ++P G HP + WR+++P K
Sbjct: 821 TVKMSYIASTKIIRIQSPAGPRHPVVMWRMKAPAKK 856
>gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo
sapiens]
Length = 2701
Score = 28.1 bits (61), Expect = 3.3
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 106 IHPYISWRLQSPGDKLPGGRKVILL 130
IHP+ W+L+S GD + G KV+L+
Sbjct: 163 IHPF--WKLRSEGDNIVVGDKVVLM 185
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 28.1 bits (61), Expect = 3.3
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 71 SPSPPSVSSEKLSSSVSMNTFSDSSTPFARAPVGKIHPYISWRLQSPGDKLPGGRKVI-L 129
S S S SS SSS S ++ S SS+P +P P + L+ PG V+
Sbjct: 86 SSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRV---LELPGVPAAAFSDVLNF 142
Query: 130 LYLDQLARPTG 140
+Y +LA P G
Sbjct: 143 IYSARLALPGG 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,849,486
Number of Sequences: 37866
Number of extensions: 321557
Number of successful extensions: 1038
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 71
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.