Guide to the Human Genome
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Name: C19orf21 Sequence: fasta or formatted (679aa) NCBI GI: 27735067
Description:

hypothetical protein LOC126353

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         61           2
 C cysteine            0.4          3           1
 D aspartate           5.4         37           2
 E glutamate           8.4         57           2
 F phenylalanine       1.8         12           2
 G glycine             6.9         47           1
 H histidine           2.7         18           1
 I isoleucine          2.7         18           1
 K lysine              3.2         22           2
 L leucine             6.6         45           2
 M methionine          0.7          5           1
 N asparagine          2.2         15           1
 P proline             9.7         66           2
 Q glutamine           6.2         42           2
 R arginine            9.7         66           2
 S serine              8.7         59           3
 T threonine           5.2         35           2
 V valine              6.5         44           2
 W tryptophan          1.9         13           1
 Y tyrosine            2.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC126353 
RAB11FIP1             0.016   RAB11 family interacting protein 1 isoform 3 
PALM2-AKAP2           0.015   PALM2-AKAP2 protein isoform 1 
CCDC88C               0.013   DVL-binding protein DAPLE 
MAPT                  0.013   microtubule-associated protein tau isoform 6 
MAPT                  0.013   microtubule-associated protein tau isoform 1 
PALM2-AKAP2           0.013   PALM2-AKAP2 protein isoform 2 
AKAP2                 0.013   A kinase (PRKA) anchor protein 2 isoform 2 
AKAP2                 0.013   A kinase (PRKA) anchor protein 2 isoform 1 
BSN                   0.011   bassoon protein 
MAST3                 0.010   microtubule associated serine/threonine kinase 3 [H...
SRRM1                 0.010   serine/arginine repetitive matrix 1 
RICH2                 0.010   Rho GTPase-activating protein RICH2 
ROBO3                 0.010   roundabout, axon guidance receptor, homolog 3 
LIMCH1                0.010   LIM and calponin homology domains 1 isoform e [Homo...
LIMCH1                0.010   LIM and calponin homology domains 1 isoform d [Homo...
LIMCH1                0.010   LIM and calponin homology domains 1 isoform c [Homo...
LIMCH1                0.010   LIM and calponin homology domains 1 isoform b [Homo...
LIMCH1                0.010   LIM and calponin homology domains 1 isoform a [Homo...
NHSL1                 0.009   NHS-like 1 
ANK2                  0.009   ankyrin 2 isoform 1 
COL18A1               0.009   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
LOC401180             0.008   PREDICTED: similar to hCG1745223 
DIP2A                 0.008   disco-interacting protein 2A isoform f 
ZNF828                0.008   zinc finger protein 828 
ZC3H18                0.008   zinc finger CCCH-type containing 18 
SHROOM4               0.007   shroom family member 4 
TTN                   0.007   titin isoform N2-A 
HR                    0.007   hairless protein isoform a 
HR                    0.007   hairless protein isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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