Guide to the Human Genome
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Name: NUP98 Sequence: fasta or formatted (1726aa) NCBI GI: 56549645
Description:

nucleoporin 98kD isoform 4

Referenced in:

HOX Genes
Nucleus and Nucleolus

Other entries for this name:
alt prot [1800aa] nucleoporin 98kD isoform 1
alt prot [920aa] nucleoporin 98kD isoform 2
alt prot [937aa] nucleoporin 98kD isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6        114           2
 C cysteine            1.1         19           1
 D aspartate           4.4         76           3
 E glutamate           5.7         99           5
 F phenylalanine       4.8         82           1
 G glycine             8.6        148           3
 H histidine           2.3         40           2
 I isoleucine          3.4         58           2
 K lysine              4.9         85           3
 L leucine            10.0        172           3
 M methionine          1.7         29           1
 N asparagine          4.6         79           2
 P proline             6.4        110           3
 Q glutamine           4.9         84           2
 R arginine            4.0         69           3
 S serine             10.4        179           3
 T threonine           9.0        155           3
 V valine              4.5         77           3
 W tryptophan          1.0         18           1
 Y tyrosine            1.9         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleoporin 98kD isoform 4 
NUP98                 0.859   nucleoporin 98kD isoform 1 
NUP98                 0.529   nucleoporin 98kD isoform 2 
NUP98                 0.526   nucleoporin 98kD isoform 3 
NUP214                0.026   nucleoporin 214kDa 
TRO                   0.025   trophinin isoform 5 
FLG2                  0.020   filaggrin family member 2 
MUC21                 0.019   mucin 21 
LOC729792             0.018   PREDICTED: hypothetical protein 
LOC100294136          0.018   PREDICTED: hypothetical protein 
LOC100294091          0.018   PREDICTED: hypothetical protein 
LOC100294238          0.018   PREDICTED: hypothetical protein 
LOC100294204          0.018   PREDICTED: hypothetical protein 
LOC100288540          0.017   PREDICTED: hypothetical protein XP_002342775 
LOC729792             0.017   PREDICTED: hypothetical protein 
LOC730401             0.017   PREDICTED: hypothetical protein 
LOC729792             0.017   PREDICTED: hypothetical protein 
LOC100294501          0.017   PREDICTED: hypothetical protein 
POM121C               0.016   POM121 membrane glycoprotein (rat)-like 
LOC100294249          0.016   PREDICTED: hypothetical protein XP_002344067 
NUP153                0.015   nucleoporin 153kDa 
POM121                0.015   nuclear pore membrane protein 121 
MUC12                 0.014   PREDICTED: mucin 12 
MUC12                 0.014   PREDICTED: mucin 12, cell surface associated 
NUP62                 0.014   nucleoporin 62kDa 
NUP62                 0.014   nucleoporin 62kDa 
NUP62                 0.014   nucleoporin 62kDa 
NUP62                 0.014   nucleoporin 62kDa 
LOC100287737          0.013   PREDICTED: hypothetical protein XP_002343203 
LOC100293409          0.013   PREDICTED: similar to Mucin-19 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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