NUP98 33090

Name: NUP98	Sequence: fasta or formatted (1726aa)		NCBI GI: 56549645
Description: nucleoporin 98kD isoform 4		Referenced in: HOX Genes Nucleus and Nucleolus
Other entries for this name: alt prot [1800aa] nucleoporin 98kD isoform 1 alt prot [920aa] nucleoporin 98kD isoform 2 alt prot [937aa] nucleoporin 98kD isoform 3
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 114 2 C cysteine 1.1 19 1 D aspartate 4.4 76 3 E glutamate 5.7 99 5 F phenylalanine 4.8 82 1 G glycine 8.6 148 3 H histidine 2.3 40 2 I isoleucine 3.4 58 2 K lysine 4.9 85 3 L leucine 10.0 172 3 M methionine 1.7 29 1 N asparagine 4.6 79 2 P proline 6.4 110 3 Q glutamine 4.9 84 2 R arginine 4.0 69 3 S serine 10.4 179 3 T threonine 9.0 155 3 V valine 4.5 77 3 W tryptophan 1.0 18 1 Y tyrosine 1.9 33 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nucleoporin 98kD isoform 4 NUP98 0.859 nucleoporin 98kD isoform 1 NUP98 0.529 nucleoporin 98kD isoform 2 NUP98 0.526 nucleoporin 98kD isoform 3 NUP214 0.026 nucleoporin 214kDa TRO 0.025 trophinin isoform 5 FLG2 0.020 filaggrin family member 2 MUC21 0.019 mucin 21 LOC729792 0.018 PREDICTED: hypothetical protein LOC100294136 0.018 PREDICTED: hypothetical protein LOC100294091 0.018 PREDICTED: hypothetical protein LOC100294238 0.018 PREDICTED: hypothetical protein LOC100294204 0.018 PREDICTED: hypothetical protein LOC100288540 0.017 PREDICTED: hypothetical protein XP_002342775 LOC729792 0.017 PREDICTED: hypothetical protein LOC730401 0.017 PREDICTED: hypothetical protein LOC729792 0.017 PREDICTED: hypothetical protein LOC100294501 0.017 PREDICTED: hypothetical protein POM121C 0.016 POM121 membrane glycoprotein (rat)-like LOC100294249 0.016 PREDICTED: hypothetical protein XP_002344067 NUP153 0.015 nucleoporin 153kDa POM121 0.015 nuclear pore membrane protein 121 MUC12 0.014 PREDICTED: mucin 12 MUC12 0.014 PREDICTED: mucin 12, cell surface associated NUP62 0.014 nucleoporin 62kDa NUP62 0.014 nucleoporin 62kDa NUP62 0.014 nucleoporin 62kDa NUP62 0.014 nucleoporin 62kDa LOC100287737 0.013 PREDICTED: hypothetical protein XP_002343203 LOC100293409 0.013 PREDICTED: similar to Mucin-19 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.