Guide to the Human Genome
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Name: PLCB1 Sequence: fasta or formatted (1216aa) NCBI GI: 12083581
Description:

phosphoinositide-specific phospholipase C beta 1 isoform a

Referenced in:

Inositol Pathways
Lipid Metabolism

Other entries for this name:
alt prot [1173aa] phosphoinositide-specific phospholipase C beta 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         67           2
 C cysteine            1.2         15           1
 D aspartate           5.7         69           8
 E glutamate           9.9        120           3
 F phenylalanine       3.5         42           3
 G glycine             4.4         53           2
 H histidine           1.8         22           2
 I isoleucine          4.8         58           2
 K lysine             10.0        122           3
 L leucine             9.2        112           2
 M methionine          2.8         34           2
 N asparagine          4.0         49           2
 P proline             5.6         68           2
 Q glutamine           5.4         66           4
 R arginine            4.1         50           3
 S serine              7.4         90           3
 T threonine           5.0         61           3
 V valine              5.9         72           2
 W tryptophan          0.5          6           1
 Y tyrosine            3.3         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphoinositide-specific phospholipase C beta 1 iso... 
PLCB1                 0.938   phosphoinositide-specific phospholipase C beta 1 iso...
PLCB3                 0.535   phospholipase C beta 3 
PLCB2                 0.438   phospholipase C, beta 2 
PLCB4                 0.333   phospholipase C beta 4 isoform b 
PLCB4                 0.332   phospholipase C beta 4 isoform a 
PLCD4                 0.132   phospholipase C, delta 4 
PLCL1                 0.128   phospholipase C-like 1 isoform a 
PLCL1                 0.128   phospholipase C-like 1 isoform b 
PLCD1                 0.127   phospholipase C, delta 1 isoform 2 
PLCD1                 0.127   phospholipase C, delta 1 isoform 1 
PLCL2                 0.126   phospholipase C-like 2 isoform 1 
PLCL2                 0.126   phospholipase C-like 2 isoform 2 
PLCH2                 0.122   phospholipase C, eta 2 
PLCZ1                 0.120   phospholipase C, zeta 1 
PLCD3                 0.118   phospholipase C delta 3 
PLCE1                 0.068   phospholipase C, epsilon 1 
PLCH1                 0.062   phospholipase C eta 1 isoform c 
PLCH1                 0.062   phospholipase C eta 1 isoform a 
PLCH1                 0.062   phospholipase C eta 1 isoform b 
PLCG1                 0.058   phospholipase C, gamma 1 isoform a 
PLCG1                 0.058   phospholipase C, gamma 1 isoform b 
PLCG2                 0.055   phospholipase C, gamma 2 
CCDC46                0.018   coiled-coil domain containing 46 isoform a 
TXLNA                 0.018   taxilin 
LOC653061             0.017   PREDICTED: similar to Golgin subfamily A member 8-l...
RB1CC1                0.016   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.016   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
LOC653061             0.016   PREDICTED: similar to Golgin subfamily A member 8-l...
TCHH                  0.015   trichohyalin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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