Guide to the Human Genome
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Name: FGF5 Sequence: fasta or formatted (123aa) NCBI GI: 15055549
Description:

fibroblast growth factor 5 isoform 2 precursor

Referenced in:

Fibroblast Growth Factors

Other entries for this name:
alt prot [268aa] fibroblast growth factor 5 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         10           2
 C cysteine            0.8          1           1
 D aspartate           1.6          2           1
 E glutamate           2.4          3           1
 F phenylalanine       4.1          5           2
 G glycine            10.6         13           1
 H histidine           4.1          5           1
 I isoleucine          2.4          3           1
 K lysine              2.4          3           1
 L leucine            10.6         13           4
 M methionine          2.4          3           1
 N asparagine          2.4          3           1
 P proline             5.7          7           1
 Q glutamine           5.7          7           1
 R arginine            6.5          8           2
 S serine             22.8         28           4
 T threonine           1.6          2           1
 V valine              2.4          3           1
 W tryptophan          1.6          2           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibroblast growth factor 5 isoform 2 precursor [Homo... 
FGF5                  0.959   fibroblast growth factor 5 isoform 1 precursor [Homo...
FGF6                  0.122   fibroblast growth factor 6 precursor 
FGF4                  0.099   fibroblast growth factor 4 precursor 
SRRM2                 0.090   splicing coactivator subunit SRm300 
TNRC18                0.063   trinucleotide repeat containing 18 
RLIM                  0.063   ring finger protein, LIM domain interacting 
RLIM                  0.063   ring finger protein, LIM domain interacting 
FGF2                  0.059   fibroblast growth factor 2 
HRNR                  0.054   hornerin 
PNN                   0.054   pinin, desmosome associated protein 
SFRS16                0.054   splicing factor, arginine/serine-rich 16 
BIN2                  0.054   bridging integrator 2 
ZC3H3                 0.054   zinc finger CCCH-type containing 3 
FLG                   0.054   filaggrin 
LOC643446             0.050   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.050   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.050   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.050   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.050   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.050   PREDICTED: similar to ribonucleic acid binding prote...
MLLT3                 0.050   myeloid/lymphoid or mixed-lineage leukemia (trithor...
RNPS1                 0.050   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.050   RNA-binding protein S1, serine-rich domain 
CIC                   0.050   capicua homolog 
MLLT10                0.045   myeloid/lymphoid or mixed-lineage leukemia transloca...
MLLT10                0.045   myeloid/lymphoid or mixed-lineage leukemia translocat...
FGF20                 0.045   fibroblast growth factor 20 
ARL6IP4               0.045   SRp25 nuclear protein isoform 1 
CHD9                  0.041   chromodomain helicase DNA binding protein 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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