NUP98 12767

Name: NUP98	Sequence: fasta or formatted (1800aa)		NCBI GI: 21264365
Description: nucleoporin 98kD isoform 1		Referenced in: HOX Genes Nucleus and Nucleolus
Other entries for this name: alt prot [920aa] nucleoporin 98kD isoform 2 alt prot [937aa] nucleoporin 98kD isoform 3 alt prot [1726aa] nucleoporin 98kD isoform 4
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.7 120 2 C cysteine 1.1 20 1 D aspartate 4.4 80 3 E glutamate 5.8 105 5 F phenylalanine 4.6 83 1 G glycine 8.4 152 3 H histidine 2.4 44 2 I isoleucine 3.4 61 2 K lysine 4.7 85 3 L leucine 10.3 186 3 M methionine 1.6 29 1 N asparagine 4.6 82 2 P proline 6.2 112 3 Q glutamine 4.9 88 2 R arginine 4.1 73 3 S serine 10.2 184 3 T threonine 8.7 157 3 V valine 4.4 80 3 W tryptophan 1.2 22 1 Y tyrosine 2.1 37 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 nucleoporin 98kD isoform 1 NUP98 0.822 nucleoporin 98kD isoform 4 NUP98 0.507 nucleoporin 98kD isoform 2 NUP98 0.503 nucleoporin 98kD isoform 3 NUP214 0.025 nucleoporin 214kDa TRO 0.024 trophinin isoform 5 FLG2 0.019 filaggrin family member 2 MUC21 0.018 mucin 21 LOC729792 0.017 PREDICTED: hypothetical protein LOC100294136 0.017 PREDICTED: hypothetical protein LOC100294091 0.017 PREDICTED: hypothetical protein LOC100294238 0.017 PREDICTED: hypothetical protein LOC100294204 0.017 PREDICTED: hypothetical protein LOC100288540 0.016 PREDICTED: hypothetical protein XP_002342775 LOC729792 0.016 PREDICTED: hypothetical protein LOC730401 0.016 PREDICTED: hypothetical protein LOC729792 0.016 PREDICTED: hypothetical protein LOC100294501 0.016 PREDICTED: hypothetical protein POM121C 0.016 POM121 membrane glycoprotein (rat)-like LOC100294249 0.015 PREDICTED: hypothetical protein XP_002344067 NUP153 0.014 nucleoporin 153kDa POM121 0.014 nuclear pore membrane protein 121 MUC12 0.014 PREDICTED: mucin 12 MUC12 0.014 PREDICTED: mucin 12, cell surface associated NUP62 0.013 nucleoporin 62kDa NUP62 0.013 nucleoporin 62kDa NUP62 0.013 nucleoporin 62kDa NUP62 0.013 nucleoporin 62kDa LOC100287737 0.012 PREDICTED: hypothetical protein XP_002343203 LOC100293409 0.012 PREDICTED: similar to Mucin-19 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.