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Search of human proteins with 169213067
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
(303 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens] 613 e-176
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 285 3e-77
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 285 3e-77
gi|48762934 alpha 2 type I collagen [Homo sapiens] 54 1e-07
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 53 4e-07
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 52 8e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 51 1e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 51 1e-06
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 51 1e-06
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 51 1e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 51 1e-06
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 50 2e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 50 3e-06
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 49 7e-06
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 47 2e-05
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 47 2e-05
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 47 2e-05
gi|50511941 EMI domain containing 1 [Homo sapiens] 47 2e-05
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 47 2e-05
gi|188536004 zinc finger protein 469 [Homo sapiens] 46 4e-05
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 46 4e-05
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 46 4e-05
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 46 4e-05
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 46 5e-05
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 46 5e-05
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 46 5e-05
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 45 6e-05
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 45 6e-05
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 45 6e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 45 8e-05
>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 613 bits (1582), Expect = e-176
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MTAKPRSPAPGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQ 60
MTAKPRSPAPGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQ
Sbjct: 1 MTAKPRSPAPGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQ 60
Query: 61 SQAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLR 120
SQAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLR
Sbjct: 61 SQAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLR 120
Query: 121 PSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGA 180
PSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGA
Sbjct: 121 PSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGA 180
Query: 181 SGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG 240
SGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG
Sbjct: 181 SGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG 240
Query: 241 ERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLPSPRSS 300
ERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLPSPRSS
Sbjct: 241 ERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLPSPRSS 300
Query: 301 ACL 303
ACL
Sbjct: 301 ACL 303
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 285 bits (729), Expect = 3e-77
Identities = 180/318 (56%), Positives = 197/318 (61%), Gaps = 45/318 (14%)
Query: 18 TGEKRPAQTLQRTPRKHA-----ASRGQAQAAAAALTPSLI---PRAAIRQSQAPDLLLA 69
+G R LQRTP +A A G+A AA S + PR A+
Sbjct: 4 SGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----------- 52
Query: 70 SRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGR--------AAGSPTRVQRRPRPLRP 121
S G G + L +P P G P+++ R A SP + RR
Sbjct: 53 SAGAPG--SPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGR 110
Query: 122 SRAAPRLRGEEPSLLR-----PQLSRRPRALRRSTRVPA----AGKGG-------DRRAP 165
+ +A RLR +L P ++ P ALR + PA A GG R
Sbjct: 111 AGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGA 170
Query: 166 VFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW 225
VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW
Sbjct: 171 ECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW 230
Query: 226 PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 285
PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP
Sbjct: 231 PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 290
Query: 286 SILESSRLLPSPRSSACL 303
SILESSRLLPSPRSSACL
Sbjct: 291 SILESSRLLPSPRSSACL 308
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 285 bits (729), Expect = 3e-77
Identities = 180/318 (56%), Positives = 197/318 (61%), Gaps = 45/318 (14%)
Query: 18 TGEKRPAQTLQRTPRKHA-----ASRGQAQAAAAALTPSLI---PRAAIRQSQAPDLLLA 69
+G R LQRTP +A A G+A AA S + PR A+
Sbjct: 4 SGGPRRLAGLQRTPAAYANEAALAISGRADEEGAAGAGSKLWRRPRGAV----------- 52
Query: 70 SRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGR--------AAGSPTRVQRRPRPLRP 121
S G G + L +P P G P+++ R A SP + RR
Sbjct: 53 SAGAPG--SPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPGAFVSPGPLGRRASCSGR 110
Query: 122 SRAAPRLRGEEPSLLR-----PQLSRRPRALRRSTRVPA----AGKGG-------DRRAP 165
+ +A RLR +L P ++ P ALR + PA A GG R
Sbjct: 111 AGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPGGRPGSEARGRSGA 170
Query: 166 VFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW 225
VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW
Sbjct: 171 ECARRVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW 230
Query: 226 PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 285
PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP
Sbjct: 231 PPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 290
Query: 286 SILESSRLLPSPRSSACL 303
SILESSRLLPSPRSSACL
Sbjct: 291 SILESSRLLPSPRSSACL 308
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 54.3 bits (129), Expect = 1e-07
Identities = 62/208 (29%), Positives = 77/208 (37%), Gaps = 22/208 (10%)
Query: 70 SRGITGCVNALGHRGSP--EAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPR 127
SRG+ G G G P GP RGP AGR G P + R P P P
Sbjct: 404 SRGLPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRP-GEPGLMGPRGLPGSPGNIGPA 462
Query: 128 LRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSER 187
G+E + P + RP + AG G+ FP GP G +G +
Sbjct: 463 --GKEGPVGLPGIDGRPGP------IGPAGARGEPGNIGFP-------GPKGPTGDPGKN 507
Query: 188 DRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--NRQHRWPPGASPSRSLGEAGGERPAR 245
K ARG P P + +GP GV + + PPG P G G PA
Sbjct: 508 GDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPG--PPGFQGLPGPSGPAG 565
Query: 246 ALRRPRAPGRAGGGGPPGGGIPACSIGP 273
+ +P G G G PG P GP
Sbjct: 566 EVGKPGERGLHGEFGLPGPAGPRGERGP 593
Score = 45.8 bits (107), Expect = 5e-05
Identities = 79/295 (26%), Positives = 102/295 (34%), Gaps = 46/295 (15%)
Query: 6 RSPAPGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQAPD 65
R P G +TGE P A +G + A A P + P
Sbjct: 819 RGPRGDQGPVGRTGEVGAVG-----PPGFAGEKGPSGEAGTAGPPG---------TPGPQ 864
Query: 66 LLLASRGITGCVNALGHRG-----------SPEAVRGPGRGRGPPNKAGRAA--GSPTRV 112
LL + GI G + G RG P + GP RGPP G G+P
Sbjct: 865 GLLGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARGPPGAVGSPGVNGAPGEA 924
Query: 113 QRRPRPLR---PSR-AAPRLRGEE--PSLLRPQLSRRPRALRRSTRVPAAGKGGDR---- 162
R P P R P +GE P + P A V AGK G+R
Sbjct: 925 GRDGNPGNDGPPGRDGQPGHKGERGYPGNIGP--VGAAGAPGPHGPVGPAGKHGNRGETG 982
Query: 163 -RAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNR 221
PV P GP G G+ ++ + + P P G +G+ +G ++G +
Sbjct: 983 PSGPVGPAGAVGPRGPSGPQGIRGDKGEPGE--KGPRGLPGLKGHNGL-QGLPGIAGHHG 1039
Query: 222 QHRWPPGASPSRSLGEAGGERPARALRR---PRAPGRAGGGGPPGGGIPACSIGP 273
P P+ G AG PA R P G AG GP G PA GP
Sbjct: 1040 DQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGP 1094
Score = 42.7 bits (99), Expect = 4e-04
Identities = 69/232 (29%), Positives = 83/232 (35%), Gaps = 33/232 (14%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRG-----RGPPNKAGRAAGSPTRVQRRPR----PLRP 121
RG G G RG+P AV PG RG AG A + R R P P
Sbjct: 663 RGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGP 722
Query: 122 SR-AAPRLRGEEPSLLRPQLSRRPRA----LRRSTRVPAAGKGGDRRAPVFPTLVPLHHG 176
+ A P +P + ++ P+ + + V AAG G P P G
Sbjct: 723 NGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPN-GPPGPAGSRGDGG 781
Query: 177 PPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTR--GPVVLSGVNRQHRWPPG-ASPS 232
PPG +G R GPP P GISG GP G+ R P G P
Sbjct: 782 PPGMTGFPGAAGRT---------GPPGPSGISGPPGPPGPAGKEGL----RGPRGDQGPV 828
Query: 233 RSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PGLARLAALGG 283
GE G P G AG GPPG P +G PG+ L G
Sbjct: 829 GRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRG 880
Score = 40.8 bits (94), Expect = 0.001
Identities = 65/227 (28%), Positives = 82/227 (36%), Gaps = 34/227 (14%)
Query: 68 LASRGITGCVNALGHRGSPEAV-----RGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPS 122
+ SRG +G G++G P V GP G P + G AAG P +
Sbjct: 606 IGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERG-AAGIPGG--------KGE 656
Query: 123 RAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASG 182
+ P LRGE + R P A+ A G G+ A P G PG G
Sbjct: 657 KGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGA-AGPAGPAGPRGSPGERG 715
Query: 183 -VGSERDRKFQLHQTPARGPPFPGISGM--TRGPVVLSGVNRQHRWPPGASPSRSLGEAG 239
VG F PA PG G +GP +GV P+ +G AG
Sbjct: 716 EVGPAGPNGFA---GPAGAAGQPGAKGERGAKGPKGENGV---------VGPTGPVGAAG 763
Query: 240 GERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLP 285
PA P G G GGPPG G P + G + + G P
Sbjct: 764 ---PAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPP 807
Score = 40.0 bits (92), Expect = 0.003
Identities = 65/218 (29%), Positives = 76/218 (34%), Gaps = 33/218 (15%)
Query: 83 RGSPEAVRGPGRGRGPPNKAGR-AAGSPTRVQRRPRPLRP----SRAAPRLRGEEPSL-L 136
R P RGP RGPP GR PT P P P A + G+ L
Sbjct: 31 RKGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGP 90
Query: 137 RPQLSRRPRALRRSTRVPA-------AGKGGD--------RRAPVFPTLVPLHHGPPGAS 181
P PR + P AG+ G+ R P P G PG
Sbjct: 91 GPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKP 150
Query: 182 GVGSERDRKFQLHQTPARG----PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGE 237
G ER + ARG P PG G+ RG L G+ Q P + GE
Sbjct: 151 GRPGERG---VVGPQGARGFPGTPGLPGFKGI-RGHNGLDGLKGQPGAPGVKGEPGAPGE 206
Query: 238 AG--GERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
G G+ AR L P GR G GP G S+GP
Sbjct: 207 NGTPGQTGARGL--PGERGRVGAPGPAGARGSDGSVGP 242
Score = 37.7 bits (86), Expect = 0.013
Identities = 64/217 (29%), Positives = 71/217 (32%), Gaps = 33/217 (15%)
Query: 67 LLASRGITGCVNALGHRGS-----PEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRP 121
L RG G G RGS P GP GPP G A G +
Sbjct: 218 LPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPG-APGPKGEIGAVGNAGPA 276
Query: 122 SRAAPRLRGEEPSLLRPQ-LSRRPRALRRSTRVPAAGKGGDRRAPVFP------------ 168
A PR P L P P A + AAG G AP P
Sbjct: 277 GPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAA 336
Query: 169 --TLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWP 226
T G PG +G E K + +GPP P RGP +G P
Sbjct: 337 GATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAG----SAGP 392
Query: 227 PGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 263
PG R G +R L P A GRAG GPPG
Sbjct: 393 PGPPGLR------GSPGSRGL--PGADGRAGVMGPPG 421
Score = 37.4 bits (85), Expect = 0.017
Identities = 44/143 (30%), Positives = 55/143 (38%), Gaps = 31/143 (21%)
Query: 131 EEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRK 190
EE P R PR R P G+ G+ PT P GPPG G+G +
Sbjct: 27 EETVRKGPAGDRGPRGERGPPGPP--GRDGEDG----PTGPPGPPGPPGPPGLGGNFAAQ 80
Query: 191 FQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGAS----------PSRSLGEAGG 240
+ +G G+ GP+ L G R PPGA+ P+ GE G
Sbjct: 81 YD-----GKGV------GLGPGPMGLMGP----RGPPGAAGAPGPQGFQGPAGEPGEPGQ 125
Query: 241 ERPARALRRPRAPGRAGGGGPPG 263
PA A PG+AG G PG
Sbjct: 126 TGPAGARGPAGPPGKAGEDGHPG 148
Score = 37.0 bits (84), Expect = 0.022
Identities = 69/254 (27%), Positives = 84/254 (33%), Gaps = 32/254 (12%)
Query: 49 TPSLIPRAAIRQSQAPDLLLASRGITGCVNALGHRGSPEAVRGPGR--GRGPPNKAGRA- 105
TP L IR D L +G G G G+P PG+ RG P + GR
Sbjct: 170 TPGLPGFKGIRGHNGLDGL---KGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVG 226
Query: 106 AGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAP 165
A P + + P A + P P + AG G R
Sbjct: 227 APGPAGARGSDGSVGPVGPAGPIGSAGPPGF-PGAPGPKGEIGAVGNAGPAGPAGPRGEV 285
Query: 166 VFPTLV-PLHHGPPGASGVGSERDRKFQLHQTPARGPP-FPGISGMTRGPVVLSGVNRQH 223
P L P+ GPPG G K G P PG G+ GPV +G
Sbjct: 286 GLPGLSGPV--GPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP-GPVGAAGATGAR 342
Query: 224 RWPPGASPSRSLGEAG--GERPARALRRPRAP----------GRAGGGGPPGGGIPACSI 271
P+ S GE+G GE + + P P G AG GPPG
Sbjct: 343 GLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPG-------- 394
Query: 272 GPGLARLAALGGLP 285
PGL GLP
Sbjct: 395 PPGLRGSPGSRGLP 408
Score = 34.7 bits (78), Expect = 0.11
Identities = 54/224 (24%), Positives = 74/224 (33%), Gaps = 34/224 (15%)
Query: 72 GITGCVNALGHRGSP-----------------EAVRGPGRGRGPPNKAGR--AAGSPTRV 112
G+TG A G G P E +RGP +GP + G A G P
Sbjct: 784 GMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFA 843
Query: 113 -QRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLV 171
++ P + P G + L P + P + R +P P+
Sbjct: 844 GEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGS-RGERGLPGVAGAVGEPGPLGIAGP 902
Query: 172 PLHHGPPGASGVGSERDRKFQLHQ--TPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA 229
P GPPGA G + + P P PG G G + +P
Sbjct: 903 PGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGP-PGRDGQP-------GHKGERGYPGNI 954
Query: 230 SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
P +G AG P + G G GP G PA ++GP
Sbjct: 955 GP---VGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGP 995
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 52.8 bits (125), Expect = 4e-07
Identities = 56/202 (27%), Positives = 68/202 (33%), Gaps = 26/202 (12%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGR--AAGSPTRVQRRPRPLRPSRAAPRLR 129
G G GH G P +G GPP GR A G P + + RP P P
Sbjct: 1240 GPPGFKGKTGHPGLP-GPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGP 1298
Query: 130 GEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLV--------PLHHGPPGAS 181
+P + A G GDR A L P H GPPG
Sbjct: 1299 PGQPG---------------PAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEP 1343
Query: 182 GVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGE 241
G ++ + GPP P G +G + P G S S+G G
Sbjct: 1344 GTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPP 1403
Query: 242 RPARALRRPRAPGRAGGGGPPG 263
PA P APG +G G PG
Sbjct: 1404 GPAGERGHPGAPGPSGSPGLPG 1425
Score = 41.6 bits (96), Expect = 9e-04
Identities = 65/229 (28%), Positives = 81/229 (35%), Gaps = 41/229 (17%)
Query: 71 RGITGCVNALGHRGSP--EAVRGPGRGRGPPNKAGRAAGSPTRVQRR-------PRPLRP 121
RG TG G G P E + GP GP + G S + + P P P
Sbjct: 1107 RGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGP 1166
Query: 122 SRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGAS 181
++ P PQ + +R + +P G G P P GP G
Sbjct: 1167 PGFPGKVGSPGPP--GPQAEKGSEGIRGPSGLP--GSPG-------PPGPPGIQGPAGLD 1215
Query: 182 GVGSERDRKFQLHQTPA-RGPPF----PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLG 236
G+ +D K L P GPP PG G T P L G P P S G
Sbjct: 1216 GLDG-KDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPG-LPGPKGDCGKP---GPPGSTG 1270
Query: 237 EAGGERPARALR---RPRAPGRAGGGGPPGGGIPACSIGPGLARLAALG 282
G E A+ RP PG G GPPG PG A ++A+G
Sbjct: 1271 RPGAEGEPGAMGPQGRPGPPGHVGPPGPPG--------QPGPAGISAVG 1311
Score = 40.4 bits (93), Expect = 0.002
Identities = 72/235 (30%), Positives = 89/235 (37%), Gaps = 38/235 (16%)
Query: 67 LLASRGITGCVNA--LGHRGSPEAVRGPGRGRGPPNKAGRA--AGSPTRVQRRPRPLRPS 122
L++S G +G V + G G P PG +G G A AGSP P P+ P
Sbjct: 568 LVSSTGASGDVGSPGFGLPGLPGRAGVPGL-KGEKGNFGEAGPAGSPGP----PGPVGP- 621
Query: 123 RAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPA-AGKGGDRRAPVFPTLVPLHHGPPGAS 181
A + EP P LS R +P +G+ G+ P F G PG
Sbjct: 622 -AGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGF--------GLPGKQ 672
Query: 182 GVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAG-G 240
G ER K Q + A P PG G T P LSG P P+ GE G G
Sbjct: 673 GKAGERGLKGQ--KGDAGNPGDPGTPGTTGRPG-LSGE------PGVQGPAGPKGEKGDG 723
Query: 241 ERPARALR--------RPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSI 287
+L+ RP PG G GP G G P PGL + GL +
Sbjct: 724 CTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGV 778
Score = 37.0 bits (84), Expect = 0.022
Identities = 64/250 (25%), Positives = 81/250 (32%), Gaps = 43/250 (17%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSR-----AA 125
RG+ G G+ G P G P GR S + P + + A
Sbjct: 678 RGLKGQKGDAGNPGDP----------GTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTAC 727
Query: 126 PRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGS 185
P L+G + P+ + V GK G P P + GPPG GV
Sbjct: 728 PSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQ---PGLPGV----QGPPGLKGVQG 780
Query: 186 ERD---RKFQLHQTPARGPPFPGISGMT--RGPVVLSGVNRQHR-----------WPPGA 229
E R Q Q P PGI G+ RGP +G PPGA
Sbjct: 781 EPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGA 840
Query: 230 SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSI-GPGLARLAALGGLPSIL 288
S S G G + P G G G PG CS G + + G P +
Sbjct: 841 SVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPG----ECSCPSQGDLIFSGMPGAPGLW 896
Query: 289 ESSRLLPSPR 298
S P P+
Sbjct: 897 MGSSWQPGPQ 906
Score = 36.2 bits (82), Expect = 0.037
Identities = 35/110 (31%), Positives = 41/110 (37%), Gaps = 17/110 (15%)
Query: 165 PVFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPF-PGISGMTRGPVVLSGVNRQH 223
P+ P P G PG G+ ER GPP PG G T GP L G+ +
Sbjct: 1049 PIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGAT-GPPGLPGIKGER 1107
Query: 224 RWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
+ + S GE G P PG G GPPG P GP
Sbjct: 1108 GY------TGSAGEKG---------EPGPPGSEGLPGPPGPAGPRGERGP 1142
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 17/100 (17%)
Query: 176 GPPGASGVGSERDRKFQLHQTPARGPPF-PGISGMTRGPVVLSGVNRQHRWPPGASPSRS 234
GP G G E+ +K + +G P PG G G + + G Q P P
Sbjct: 387 GPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRP-GEICVIGPKGQKGDPGFVGPEGL 445
Query: 235 LGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 274
GE PG G GPPG G+P PG
Sbjct: 446 AGE---------------PGPPGLPGPPGIGLPGTPGDPG 470
Score = 29.3 bits (64), Expect = 4.5
Identities = 55/232 (23%), Positives = 75/232 (32%), Gaps = 64/232 (27%)
Query: 68 LASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPR 127
L G+ G G +G +G G +G P K GR RP P+
Sbjct: 386 LGPSGLPGSTGEKGQKGE----KGDGGIKGVPGKPGRDG----------RPGEICVIGPK 431
Query: 128 LRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSER 187
+ +P + P+ G G+ P P GPPG G+
Sbjct: 432 GQKGDPGFVGPE-----------------GLAGEPGPPGLP-------GPPGIGLPGTPG 467
Query: 188 DRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRS--LGEAGGE---- 241
D GPP P +G SG+ + PG P + GE G
Sbjct: 468 D---------PGGPPGP------KGDKGSSGIPGKEG--PGGKPGKPGVKGEKGDPCEVC 510
Query: 242 --RPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESS 291
P PG+ G G PG +PA PG+ + G P + SS
Sbjct: 511 PTLPEGFQNFVGLPGKPGPKGEPGDPVPARG-DPGIQGIKGEKGEPCLSCSS 561
Score = 28.9 bits (63), Expect = 5.9
Identities = 51/209 (24%), Positives = 75/209 (35%), Gaps = 23/209 (11%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGR-----GPPNKAGRAA--GSPTRVQRRPRPLRPSRA 124
G G G +G GPG+ GPP AG G+P P P
Sbjct: 1371 GAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSM 1430
Query: 125 APRLRGEE-PSLLRPQLSRR--PRALRRSTRVP-----AAGKGGDRRAPVFPTLVPLHHG 176
+ +E +R ++ + R ++R+ AA G R P P G
Sbjct: 1431 GDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPG--RPGPPGKDGAPGRPG 1488
Query: 177 PPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWP--PGASPSRS 234
PG+ G+ + R+ + RG PG G +G + + G+ ++ P PG
Sbjct: 1489 APGSPGLPGQIGREGRQGLPGVRG--LPGTKG-EKGDIGI-GIAGENGLPGPPGPQGPPG 1544
Query: 235 LGEAGGERPARALRRPRAPGRAGGGGPPG 263
G+ G P P PG G G PG
Sbjct: 1545 YGKMGATGPMGQQGIPGIPGPPGPMGQPG 1573
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 51.6 bits (122), Expect = 8e-07
Identities = 64/230 (27%), Positives = 79/230 (34%), Gaps = 31/230 (13%)
Query: 50 PSLIPRAAIRQSQAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSP 109
P L R Q P ++G G A G GSP PG P K P
Sbjct: 1274 PGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGP 1333
Query: 110 --TRVQRRPRPLRPSRAAPR--LRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAP 165
+R PR + AP + GE P L R+ P+ G P
Sbjct: 1334 RGDPGERGPRGPKGEPGAPGQVIGGEGPGL----------PGRKGDPGPSGPPG-----P 1378
Query: 166 VFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRW 225
P P GPPG G + D+ RGPP PG G+ G L G+
Sbjct: 1379 RGPLGDPGPRGPPGLPGTAMKGDK----GDRGERGPPGPGEGGIAPGEPGLPGL------ 1428
Query: 226 PPGASPSRSLGEAG--GERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
P P +G G GE+ P PG+ G G G P +IGP
Sbjct: 1429 PGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGP 1478
Score = 49.7 bits (117), Expect = 3e-06
Identities = 78/317 (24%), Positives = 103/317 (32%), Gaps = 56/317 (17%)
Query: 8 PAPGLGGSK-----KTGEKRPAQTLQRTPRKHAA------SRGQAQAAAAALTPSLIPRA 56
P PGL G + K + P + P+ RG+ P L
Sbjct: 2099 PGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGER 2158
Query: 57 AIRQSQAPDLLLASRGITGCVNALGHRGSPEAV--------RGPGRGRGPPNKAG---RA 105
+ + L RG G V G G P A +GP +G P + G R
Sbjct: 2159 GMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRG 2218
Query: 106 AGSPTRVQRRPRPLRPS-----RAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGG 160
PT P P PS + +P L G+ +P R A +GK G
Sbjct: 2219 LTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGA---------SGKDG 2269
Query: 161 DRRAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVN 220
DR +P G PG+ G+ K + T A G G+ G G+
Sbjct: 2270 DRGSP----------GVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLA 2319
Query: 221 RQHRWPPGASPSRSL----------GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACS 270
PGA R L G AG + APG G G PG G+P
Sbjct: 2320 GDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSP 2379
Query: 271 IGPGLARLAALGGLPSI 287
PG + GLP +
Sbjct: 2380 GPPGPPGVKGDLGLPGL 2396
Score = 45.1 bits (105), Expect = 8e-05
Identities = 68/233 (29%), Positives = 83/233 (35%), Gaps = 33/233 (14%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGS--PTRVQRRPRPLRPSRAAPRLR 129
G+ G G RG P RGP +G P G+ G P R+ P PR
Sbjct: 1323 GLKGSPGLPGPRGDP-GERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGP 1381
Query: 130 GEEPSLLRPQ-----LSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHH--------G 176
+P P + + R P G+GG AP P L L G
Sbjct: 1382 LGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGI--APGEPGLPGLPGSPGPQGPVG 1439
Query: 177 PPGASGV-GSERDRKFQLHQTPA-------RGPPFP----GISGMTRGPVVLSGVNRQHR 224
PPG G G D L P RGPP G G GP+ +G + R
Sbjct: 1440 PPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFP-GPLGEAG-EKGER 1497
Query: 225 WPPGASPSRSLGEAGGERPARALRRPRAP-GRAGGGGPPGGGIPACSIGPGLA 276
PPG + SR L G A+ P P GR G G PG +GP +A
Sbjct: 1498 GPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVA 1550
Score = 43.9 bits (102), Expect = 2e-04
Identities = 73/236 (30%), Positives = 91/236 (38%), Gaps = 38/236 (16%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRG-RGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLR 129
RG G + G G P V PG+G G P G + + L R LR
Sbjct: 1877 RGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERG---LR 1933
Query: 130 GEEPSLLRPQLSR-------RPRALRRSTRVPAAGKGGDRRAPVF---PTLVPLHHGPPG 179
GE S+ P + R + ALR G P P GPPG
Sbjct: 1934 GEPGSV--PNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPG 1991
Query: 180 ASG-VG--SERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWP--PGASPSRS 234
G +G ER K +GPP G++ RGP SG+ + P PG P R+
Sbjct: 1992 KEGPIGFPGERGLKGDRGDPGPQGPP--GLALGERGPPGPSGLAGEPGKPGIPGL-PGRA 2048
Query: 235 --LGEAG--GERPARALRRPRA-------PGRAGGGGPPGGGIPACSI---GPGLA 276
+GEAG GER R + R PG G GPPG P S+ GPGL+
Sbjct: 2049 GGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLS 2104
Score = 42.4 bits (98), Expect = 5e-04
Identities = 73/254 (28%), Positives = 93/254 (36%), Gaps = 54/254 (21%)
Query: 64 PDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPR------ 117
P L L RG G G G P PGR G +AGR R ++ R
Sbjct: 2017 PGLALGERGPPGPSGLAGEPGKPGIPGLPGRA-GGVGEAGRPGERGERGEKGERGEQGRD 2075
Query: 118 --------PLRPSRAAPRLRGEEPSLLRPQLS--RRPRALRRSTRVPAAGKGGDRRAPVF 167
P P P++ +EP P LS + P L+ + P G GD+
Sbjct: 2076 GPPGLPGTPGPPGPPGPKVSVDEPG---PGLSGEQGPPGLKGAKGEP--GSNGDQ----- 2125
Query: 168 PTLVPLHHGPPGASGV-GSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWP 226
GP G GV G + DR + P PG GM GP G+ + R P
Sbjct: 2126 --------GPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMA-GPEGKPGL-QGPRGP 2175
Query: 227 PGASPSRSLGEAGGERPARALRRPRAP-------GRAGGGGPPGGGI--PACSIG----P 273
PG P G+ G A L P P G G GPPG G+ P ++G P
Sbjct: 2176 PG--PVGGHGDP-GPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPP 2232
Query: 274 GLARLAALGGLPSI 287
G + L G P +
Sbjct: 2233 GPSGLVGPQGSPGL 2246
Score = 39.3 bits (90), Expect = 0.004
Identities = 63/210 (30%), Positives = 74/210 (35%), Gaps = 18/210 (8%)
Query: 70 SRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAA--GSPTRVQ-RRPRPLRPSRA-- 124
S G+ G LG +G P A PG G P K G G V PR L+ R
Sbjct: 2573 SAGLPGLRGLLGPQGQPGAAGIPG-DPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVK 2631
Query: 125 -APRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGV 183
A L GE+ RP + G G AP L+ GP G G
Sbjct: 2632 GACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLI----GPKGDRGF 2687
Query: 184 GSERDRKFQLHQTPARGPP----FPGISGM--TRGPVVLSGVNRQHRWPPGASPSRSLGE 237
+ K + RG P FPG SG + GP G + R P G +
Sbjct: 2688 DGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPG-SVGPRGPEGLQGQKGERG 2746
Query: 238 AGGERPARALRRPRAPGRAGGGGPPGGGIP 267
GER A P APG G G PG P
Sbjct: 2747 PPGERVVGAPGVPGAPGERGEQGRPGPAGP 2776
Score = 38.5 bits (88), Expect = 0.007
Identities = 63/227 (27%), Positives = 75/227 (33%), Gaps = 48/227 (21%)
Query: 72 GITGCVNALGHRGSPEAV-------RGPGRGRGPPNKAGRA-----AGSPTRVQRRPRPL 119
G G G RG P V +G RGP GRA +G P RP
Sbjct: 1563 GPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPG 1622
Query: 120 RPSRAAPRLR-------GEEPSLLRPQLSRRP--RALRRSTRVPA-AGKGGDRRAPVFPT 169
P PR R G+E P L + R LR + V G+ GD+ P
Sbjct: 1623 PPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDG 1682
Query: 170 LVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV---NRQHRWP 226
+G PG+SG +R GPP P + GP +R P
Sbjct: 1683 ----RNGSPGSSGPKGDRGEP---------GPPGPPGRLVDTGPGAREKGEPGDRGQEGP 1729
Query: 227 PGASPSRSLGEAGGERPARALRRPRAP----------GRAGGGGPPG 263
G L A GER R P P G G GPPG
Sbjct: 1730 RGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPG 1776
Score = 37.7 bits (86), Expect = 0.013
Identities = 75/250 (30%), Positives = 94/250 (37%), Gaps = 42/250 (16%)
Query: 70 SRGITGCVNALGHRGSP--EAVRGPGRGRGPPNKAGRAA-GSPTRVQRRPRPL-RPSRAA 125
S G+ G V G G+P + G RG P G P + P P P +A
Sbjct: 2243 SPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAV 2302
Query: 126 ---PRLRGEE--PSLLRPQLSRRPRALR-RSTRVPAAGKGGDRRAPVFPTLVPLHHGPPG 179
P +GE+ P L L P A R P KG RA P G G
Sbjct: 2303 VGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGD--PGEDGQKG 2360
Query: 180 ASGV-GSERDRKFQLHQTPARGPPFP-------GISGMTRGPVVLSGVNRQHRWPPGASP 231
A G G + D + +P GPP P G+ G+ P V+ +P P
Sbjct: 2361 APGPKGFKGDPGVGVPGSP--GPPGPPGVKGDLGLPGLPGAPGVVG-------FPGQTGP 2411
Query: 232 SRSLGEAG--GERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PGLARLAALGGLPSIL 288
+G+ G GER L P PGR G GP G P S+G PG + L G P +
Sbjct: 2412 RGEMGQPGPSGER---GLAGP--PGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGV- 2465
Query: 289 ESSRLLPSPR 298
LP PR
Sbjct: 2466 ----GLPGPR 2471
Score = 34.7 bits (78), Expect = 0.11
Identities = 34/100 (34%), Positives = 43/100 (43%), Gaps = 22/100 (22%)
Query: 177 PPGASGVGSERDRKFQLHQTPARGPPF-PGISGMTRGPVVLSGVNRQHRWPPGASPSRSL 235
P G G E + Q+ GPP PG+ G T P + PPG++ ++
Sbjct: 1252 PKGQKGEPGEMGLRGQV------GPPGDPGLPGRTGAP--------GPQGPPGSATAK-- 1295
Query: 236 GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGL 275
GE G A RP +PGRAG G PG P PGL
Sbjct: 1296 GERGFPG---ADGRPGSPGRAGNPGTPGA--PGLKGSPGL 1330
Score = 30.0 bits (66), Expect = 2.6
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 70 SRGITGCVNALGHRGSPEAVRGPGRGRGPPN-KAGRAAGSPTRVQRRPRPLRPSRAAPRL 128
S G G ++G RG PE ++G RGPP + A G P R RP A PR
Sbjct: 2720 SAGPPGPPGSVGPRG-PEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRPGPAGPRG 2778
Query: 129 RGEEPSL 135
E +L
Sbjct: 2779 EKGEAAL 2785
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 51.2 bits (121), Expect = 1e-06
Identities = 63/238 (26%), Positives = 81/238 (34%), Gaps = 40/238 (16%)
Query: 72 GITGCVNALGHRGSP-----EAVRGPGRGRGPPNKAGRA-----AGSPTRVQRR----PR 117
G G G +G+P V GP RGPP G+ AG P + R P+
Sbjct: 213 GPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 272
Query: 118 PLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAP--VFPTLVPLHH 175
R P L G + P L +G G+ +P + P +P
Sbjct: 273 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 332
Query: 176 GPPGASGVGSERDRKFQLHQT-------PARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 228
G G +G R Q PA GP FPG G +G
Sbjct: 333 GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPG-AKGE--------------- 376
Query: 229 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLP 285
A P+ + G G + P P +PG AG G PG GIP G +A G P
Sbjct: 377 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 434
Score = 48.9 bits (115), Expect = 5e-06
Identities = 64/224 (28%), Positives = 85/224 (37%), Gaps = 20/224 (8%)
Query: 70 SRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLR 129
+RG G V +G P RG RG P + G A +R P L + A
Sbjct: 493 ARGEPGGVGPIG----PPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDP 548
Query: 130 GE--EPSLLRPQ-LSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSE 186
G EP L + L+ RP +V +G G+ P P G PG G
Sbjct: 549 GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR-GQPGVMGFPGP 607
Query: 187 RDRKFQLHQTPARG-PPFPGISGMTR--GPVVLSGVNRQHRWPPG-ASPSRSLGEAGGER 242
+ + + +G P PG+ G+ G +G PPG A P+ GE G
Sbjct: 608 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG-------PPGPAGPAGERGEQGAPG 660
Query: 243 PARALRRPRAPGRAGGGGPPGG-GIPACSIGPGLARLAALGGLP 285
P+ P PG G GG PG G+P + PGL G P
Sbjct: 661 PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 704
Score = 45.1 bits (105), Expect = 8e-05
Identities = 66/216 (30%), Positives = 80/216 (37%), Gaps = 43/216 (19%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGRGPPNKAG--RAAGSPTRV-QRRPRPLRPSRAAPR 127
RG G G +G P PG G G P G AG+P V R R R +P
Sbjct: 653 RGEQGAPGPSGFQGLPGPPGPPGEG-GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPG 711
Query: 128 LRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSER 187
+G + PR L + G G + A P P GPPG G+ ER
Sbjct: 712 AQGLQG----------PRGLPGTP-----GTDGPKGASG-PAGPPGAQGPPGLQGMPGER 755
Query: 188 ----------DRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGE 237
DR + P P G G+T GP+ G P GA+ + GE
Sbjct: 756 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT-GPIGPPG-------PAGANGEK--GE 805
Query: 238 AGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
G PA + APG G GPPG PA GP
Sbjct: 806 VGPPGPAGSAGARGAPGERGETGPPG---PAGFAGP 838
Score = 43.5 bits (101), Expect = 2e-04
Identities = 59/213 (27%), Positives = 73/213 (34%), Gaps = 49/213 (23%)
Query: 62 QAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRP 121
Q P +G TG G RG+ +GP G P AGR P P P P
Sbjct: 866 QGPSGAPGPQGPTGVTGPKGARGA----QGPPGATGFPGAAGRVG--PPGSNGNPGPPGP 919
Query: 122 SRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGAS 181
P G++ P+ R + P + P P P G PG
Sbjct: 920 ----PGPSGKDG----------PKGARGDSGPPGRAGEPGLQGPAGP---PGEKGEPGDD 962
Query: 182 GVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG 240
G A GPP P G++G RG V L G + +P PS G+ G
Sbjct: 963 GPSG------------AEGPPGPQGLAGQ-RGIVGLPGQRGERGFPGLPGPSGEPGKQG- 1008
Query: 241 ERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
APG +G GPPG P GP
Sbjct: 1009 -----------APGASGDRGPPGPVGPPGLTGP 1030
Score = 41.6 bits (96), Expect = 9e-04
Identities = 58/206 (28%), Positives = 70/206 (33%), Gaps = 24/206 (11%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPL-RPSRAAPR-LR 129
G+TG G GSP A PGR K R P P P A P +
Sbjct: 1026 GLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQ 1085
Query: 130 GE--EPSLLRPQLSRRPRALR--RSTRVPAAGKG-----GDRRAPVFPTLVPLHHGPPGA 180
G+ E P P R + + P KG G+R L G PG
Sbjct: 1086 GDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGL-QGLPGP 1144
Query: 181 SGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG 240
G ++ + RGPP GPV SG + + P P G +G
Sbjct: 1145 PGPSGDQGASGPAGPSGPRGPP---------GPVGPSGKDGANGIPGPIGPPGPRGRSGE 1195
Query: 241 ERPARALRRPRAPGRAGGGGPPGGGI 266
PA P PG G GPPG GI
Sbjct: 1196 TGPAGP---PGNPGPPGPPGPPGPGI 1218
Score = 41.2 bits (95), Expect = 0.001
Identities = 66/229 (28%), Positives = 84/229 (36%), Gaps = 25/229 (10%)
Query: 62 QAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRP 121
Q P L + G G A G G P A +GP +G P + G A + + R +
Sbjct: 716 QGPRGLPGTPGTDGPKGASGPAGPPGA-QGPPGLQGMPGERGAAGIAGPKGDRGDVGEKG 774
Query: 122 SRAAPRLRGEE--PSLLRPQLSRRPRALRRSTRVPA-AGKGGDRRAP-----VFPTLVPL 173
AP G + P + P AG G R AP P
Sbjct: 775 PEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAG 834
Query: 174 HHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMT--RGPVVLSGVN--RQHRWPPG 228
GPPGA G + + + Q G P P G SG +GP ++G R + PPG
Sbjct: 835 FAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPG 894
Query: 229 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLAR 277
A+ G AG P PG G GPPG P+ GP AR
Sbjct: 895 ATGFP--GAAGRVGP---------PGSNGNPGPPGPPGPSGKDGPKGAR 932
Score = 39.7 bits (91), Expect = 0.003
Identities = 66/251 (26%), Positives = 77/251 (30%), Gaps = 51/251 (20%)
Query: 64 PDLLLASRGITGCVNALGHRGSP-----------EAVRGPGRGRGPPNKAGRA-----AG 107
P L RGI G G RG P + G RGPP G AG
Sbjct: 973 PQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG 1032
Query: 108 SPTRVQRRPRPLRPSR-AAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDR---- 162
P R P R A ++G+ P GK GDR
Sbjct: 1033 EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAG 1092
Query: 163 -RAPVFPTLVPLHHGPPGASGV-------------GSERDRKFQLHQ-----TPARGPPF 203
+ P+ P+ GP GA G+ G +R + H+ GPP
Sbjct: 1093 AQGPMGPS------GPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPG 1146
Query: 204 PGISGMTRGPVVLSGVNRQHRWPPG-ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPP 262
P GP SG R PPG PS G G P G G GPP
Sbjct: 1147 PSGDQGASGPAGPSGP----RGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPP 1202
Query: 263 GGGIPACSIGP 273
G P GP
Sbjct: 1203 GNPGPPGPPGP 1213
Score = 38.5 bits (88), Expect = 0.007
Identities = 66/224 (29%), Positives = 81/224 (36%), Gaps = 43/224 (19%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAA-PRLRG 130
G TG A G G P + PG GPP +G+ R P P RA P L+G
Sbjct: 894 GATGFPGAAGRVGPPGSNGNPGPP-GPPGPSGKDGPKGARGDSGP----PGRAGEPGLQG 948
Query: 131 E--------EPSLLRPQLSRRPRALR----RSTRVPAAGKGGDRRAPVFP--TLVPLHHG 176
EP P + P + + V G+ G+R P P + P G
Sbjct: 949 PAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG 1008
Query: 177 PPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHR--WPPGASPSR 233
PGASG RGPP P G G+T GP G PPG +
Sbjct: 1009 APGASG---------------DRGPPGPVGPPGLT-GPAGEPGREGSPGADGPPGRDGAA 1052
Query: 234 SL----GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
+ GE G A P +PG AG G G A + GP
Sbjct: 1053 GVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1096
Score = 34.7 bits (78), Expect = 0.11
Identities = 61/227 (26%), Positives = 78/227 (34%), Gaps = 55/227 (24%)
Query: 81 GHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEE-------- 132
G +G P ++ +GPP G A R R + + AP RG +
Sbjct: 104 GQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGD---KGEKGAPGPRGRDGEPGTPGN 160
Query: 133 PSLLRPQLSRRPRALRRSTRVPAAG-----KGGDRRAPVFPTLVPL-HHGPPGASGVGSE 186
P P P L + AG GG + + + P+ GPPG +G
Sbjct: 161 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP 220
Query: 187 RDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG--ASPSRSLGEAGGERPA 244
Q Q P PG+SG GP R PPG P GEAG
Sbjct: 221 -----QGFQGNPGEPGEPGVSG-PMGP----------RGPPGPPGKPGDD-GEAG----- 258
Query: 245 RALRRPRAPGRAGGGGPPG----GGIPACSIGPGLARLAALGGLPSI 287
PG+AG GPPG G P PGL + G P +
Sbjct: 259 -------KPGKAGERGPPGPQGARGFPGT---PGLPGVKGHRGYPGL 295
Score = 30.0 bits (66), Expect = 2.6
Identities = 29/99 (29%), Positives = 35/99 (35%), Gaps = 17/99 (17%)
Query: 165 PVFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHR 224
P+ PT + G PG G E + +GPP P +GP G
Sbjct: 87 PICPTDLATASGQPGPKGQKGEPGDIKDI--VGPKGPPGP------QGPAGEQG------ 132
Query: 225 WPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 263
P G + GE G P P PG G GPPG
Sbjct: 133 -PRGDRGDK--GEKGAPGPRGRDGEPGTPGNPGPPGPPG 168
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 51.2 bits (121), Expect = 1e-06
Identities = 63/238 (26%), Positives = 81/238 (34%), Gaps = 40/238 (16%)
Query: 72 GITGCVNALGHRGSP-----EAVRGPGRGRGPPNKAGRA-----AGSPTRVQRR----PR 117
G G G +G+P V GP RGPP G+ AG P + R P+
Sbjct: 144 GPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQ 203
Query: 118 PLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAP--VFPTLVPLHH 175
R P L G + P L +G G+ +P + P +P
Sbjct: 204 GARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGER 263
Query: 176 GPPGASGVGSERDRKFQLHQT-------PARGPPFPGISGMTRGPVVLSGVNRQHRWPPG 228
G G +G R Q PA GP FPG G +G
Sbjct: 264 GRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPG-AKGE--------------- 307
Query: 229 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLP 285
A P+ + G G + P P +PG AG G PG GIP G +A G P
Sbjct: 308 AGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 365
Score = 48.9 bits (115), Expect = 5e-06
Identities = 64/224 (28%), Positives = 85/224 (37%), Gaps = 20/224 (8%)
Query: 70 SRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLR 129
+RG G V +G P RG RG P + G A +R P L + A
Sbjct: 424 ARGEPGGVGPIG----PPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDP 479
Query: 130 GE--EPSLLRPQ-LSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSE 186
G EP L + L+ RP +V +G G+ P P G PG G
Sbjct: 480 GRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR-GQPGVMGFPGP 538
Query: 187 RDRKFQLHQTPARG-PPFPGISGMTR--GPVVLSGVNRQHRWPPG-ASPSRSLGEAGGER 242
+ + + +G P PG+ G+ G +G PPG A P+ GE G
Sbjct: 539 KGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG-------PPGPAGPAGERGEQGAPG 591
Query: 243 PARALRRPRAPGRAGGGGPPGG-GIPACSIGPGLARLAALGGLP 285
P+ P PG G GG PG G+P + PGL G P
Sbjct: 592 PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFP 635
Score = 45.1 bits (105), Expect = 8e-05
Identities = 66/216 (30%), Positives = 80/216 (37%), Gaps = 43/216 (19%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGRGPPNKAG--RAAGSPTRV-QRRPRPLRPSRAAPR 127
RG G G +G P PG G G P G AG+P V R R R +P
Sbjct: 584 RGEQGAPGPSGFQGLPGPPGPPGEG-GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPG 642
Query: 128 LRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSER 187
+G + PR L + G G + A P P GPPG G+ ER
Sbjct: 643 AQGLQG----------PRGLPGTP-----GTDGPKGASG-PAGPPGAQGPPGLQGMPGER 686
Query: 188 ----------DRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGE 237
DR + P P G G+T GP+ G P GA+ + GE
Sbjct: 687 GAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT-GPIGPPG-------PAGANGEK--GE 736
Query: 238 AGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
G PA + APG G GPPG PA GP
Sbjct: 737 VGPPGPAGSAGARGAPGERGETGPPG---PAGFAGP 769
Score = 43.5 bits (101), Expect = 2e-04
Identities = 59/213 (27%), Positives = 73/213 (34%), Gaps = 49/213 (23%)
Query: 62 QAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRP 121
Q P +G TG G RG+ +GP G P AGR P P P P
Sbjct: 797 QGPSGAPGPQGPTGVTGPKGARGA----QGPPGATGFPGAAGRVG--PPGSNGNPGPPGP 850
Query: 122 SRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGAS 181
P G++ P+ R + P + P P P G PG
Sbjct: 851 ----PGPSGKDG----------PKGARGDSGPPGRAGEPGLQGPAGP---PGEKGEPGDD 893
Query: 182 GVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG 240
G A GPP P G++G RG V L G + +P PS G+ G
Sbjct: 894 GPSG------------AEGPPGPQGLAGQ-RGIVGLPGQRGERGFPGLPGPSGEPGKQG- 939
Query: 241 ERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
APG +G GPPG P GP
Sbjct: 940 -----------APGASGDRGPPGPVGPPGLTGP 961
Score = 41.6 bits (96), Expect = 9e-04
Identities = 58/206 (28%), Positives = 70/206 (33%), Gaps = 24/206 (11%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPL-RPSRAAPR-LR 129
G+TG G GSP A PGR K R P P P A P +
Sbjct: 957 GLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQ 1016
Query: 130 GE--EPSLLRPQLSRRPRALR--RSTRVPAAGKG-----GDRRAPVFPTLVPLHHGPPGA 180
G+ E P P R + + P KG G+R L G PG
Sbjct: 1017 GDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGL-QGLPGP 1075
Query: 181 SGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG 240
G ++ + RGPP GPV SG + + P P G +G
Sbjct: 1076 PGPSGDQGASGPAGPSGPRGPP---------GPVGPSGKDGANGIPGPIGPPGPRGRSGE 1126
Query: 241 ERPARALRRPRAPGRAGGGGPPGGGI 266
PA P PG G GPPG GI
Sbjct: 1127 TGPAGP---PGNPGPPGPPGPPGPGI 1149
Score = 41.2 bits (95), Expect = 0.001
Identities = 66/229 (28%), Positives = 84/229 (36%), Gaps = 25/229 (10%)
Query: 62 QAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRP 121
Q P L + G G A G G P A +GP +G P + G A + + R +
Sbjct: 647 QGPRGLPGTPGTDGPKGASGPAGPPGA-QGPPGLQGMPGERGAAGIAGPKGDRGDVGEKG 705
Query: 122 SRAAPRLRGEE--PSLLRPQLSRRPRALRRSTRVPA-AGKGGDRRAP-----VFPTLVPL 173
AP G + P + P AG G R AP P
Sbjct: 706 PEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAG 765
Query: 174 HHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMT--RGPVVLSGVN--RQHRWPPG 228
GPPGA G + + + Q G P P G SG +GP ++G R + PPG
Sbjct: 766 FAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPG 825
Query: 229 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLAR 277
A+ G AG P PG G GPPG P+ GP AR
Sbjct: 826 ATGFP--GAAGRVGP---------PGSNGNPGPPGPPGPSGKDGPKGAR 863
Score = 39.7 bits (91), Expect = 0.003
Identities = 66/251 (26%), Positives = 77/251 (30%), Gaps = 51/251 (20%)
Query: 64 PDLLLASRGITGCVNALGHRGSP-----------EAVRGPGRGRGPPNKAGRA-----AG 107
P L RGI G G RG P + G RGPP G AG
Sbjct: 904 PQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG 963
Query: 108 SPTRVQRRPRPLRPSR-AAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDR---- 162
P R P R A ++G+ P GK GDR
Sbjct: 964 EPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAG 1023
Query: 163 -RAPVFPTLVPLHHGPPGASGV-------------GSERDRKFQLHQ-----TPARGPPF 203
+ P+ P+ GP GA G+ G +R + H+ GPP
Sbjct: 1024 AQGPMGPS------GPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPG 1077
Query: 204 PGISGMTRGPVVLSGVNRQHRWPPG-ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPP 262
P GP SG R PPG PS G G P G G GPP
Sbjct: 1078 PSGDQGASGPAGPSGP----RGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPP 1133
Query: 263 GGGIPACSIGP 273
G P GP
Sbjct: 1134 GNPGPPGPPGP 1144
Score = 38.5 bits (88), Expect = 0.007
Identities = 66/224 (29%), Positives = 81/224 (36%), Gaps = 43/224 (19%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAA-PRLRG 130
G TG A G G P + PG GPP +G+ R P P RA P L+G
Sbjct: 825 GATGFPGAAGRVGPPGSNGNPGPP-GPPGPSGKDGPKGARGDSGP----PGRAGEPGLQG 879
Query: 131 E--------EPSLLRPQLSRRPRALR----RSTRVPAAGKGGDRRAPVFP--TLVPLHHG 176
EP P + P + + V G+ G+R P P + P G
Sbjct: 880 PAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQG 939
Query: 177 PPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHR--WPPGASPSR 233
PGASG RGPP P G G+T GP G PPG +
Sbjct: 940 APGASG---------------DRGPPGPVGPPGLT-GPAGEPGREGSPGADGPPGRDGAA 983
Query: 234 SL----GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
+ GE G A P +PG AG G G A + GP
Sbjct: 984 GVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1027
Score = 34.7 bits (78), Expect = 0.11
Identities = 61/227 (26%), Positives = 78/227 (34%), Gaps = 55/227 (24%)
Query: 81 GHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEE-------- 132
G +G P ++ +GPP G A R R + + AP RG +
Sbjct: 35 GQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGD---KGEKGAPGPRGRDGEPGTPGN 91
Query: 133 PSLLRPQLSRRPRALRRSTRVPAAG-----KGGDRRAPVFPTLVPL-HHGPPGASGVGSE 186
P P P L + AG GG + + + P+ GPPG +G
Sbjct: 92 PGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP 151
Query: 187 RDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG--ASPSRSLGEAGGERPA 244
Q Q P PG+SG GP R PPG P GEAG
Sbjct: 152 -----QGFQGNPGEPGEPGVSG-PMGP----------RGPPGPPGKPGDD-GEAG----- 189
Query: 245 RALRRPRAPGRAGGGGPPG----GGIPACSIGPGLARLAALGGLPSI 287
PG+AG GPPG G P PGL + G P +
Sbjct: 190 -------KPGKAGERGPPGPQGARGFPGT---PGLPGVKGHRGYPGL 226
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 51.2 bits (121), Expect = 1e-06
Identities = 69/243 (28%), Positives = 87/243 (35%), Gaps = 36/243 (14%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRP-----SRAA 125
RG+ G V ALG +G+ PG P + A P + RP P P + A
Sbjct: 1062 RGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGA 1121
Query: 126 PRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDR-----------------RAPVFP 168
P +G + R L + V G+ GD+ + P P
Sbjct: 1122 PGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGP 1181
Query: 169 TLVPLHHGPPGASGVGSE---RDRKFQLHQTPARGP-PFPGISGMTRGPVVLSGVNRQHR 224
T G PG SG E R ++ Q GP FPG GPV L G+
Sbjct: 1182 TGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPG----PPGPVGLQGL----P 1233
Query: 225 WPPG-ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGG-GIPACSIGPGLARLAALG 282
PPG + +G+ G P APG G GPPGG G P G A
Sbjct: 1234 GPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEP 1293
Query: 283 GLP 285
GLP
Sbjct: 1294 GLP 1296
Score = 47.0 bits (110), Expect = 2e-05
Identities = 78/298 (26%), Positives = 104/298 (34%), Gaps = 44/298 (14%)
Query: 10 PGLGGSKKTGEKRPAQTLQRTPRKH-----AASRGQAQAAAAALTPSLIPRA--AIRQSQ 62
PGL G+ G P T+ P + A S+G +A + +++ +A A+R
Sbjct: 504 PGLPGAD--GLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLALRGPA 561
Query: 63 APDLLLASRGITGCVNALGHRGSP--------EAVRGPGRGRGPPNKAGRAAGSPTRV-- 112
P L G G + G +G P V+GP G P + GRA R
Sbjct: 562 GPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMP 621
Query: 113 -QRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAP------ 165
Q P+ R L GE+ P S P G+ G R P
Sbjct: 622 GQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPR 681
Query: 166 --VFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPF----PGISGMTRGPVVLSGV 219
+ P P GPPG +G+ + K + GPP PG G+ GP G
Sbjct: 682 GLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLP-GPQGAIG- 739
Query: 220 NRQHRWPPGASPSRSL----GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
PPG G G + P + PG GG GPPG P GP
Sbjct: 740 ------PPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGP 791
Score = 40.4 bits (93), Expect = 0.002
Identities = 58/210 (27%), Positives = 70/210 (33%), Gaps = 22/210 (10%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRG 130
+G+ G G RG P GP +G P G + Q P P PR
Sbjct: 1206 QGLFGQKGDEGPRGFP-GPPGPVGLQGLPGPPGEKGETGDVGQMGP----PGPPGPRGPS 1260
Query: 131 EEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRK 190
P PQ P + V G+ G+ P P GPPG G ER K
Sbjct: 1261 GAPGADGPQ--GPPGGIGNPGAVGEKGEPGEAGEPGLPG----EGGPPGPKG---ERGEK 1311
Query: 191 FQLHQTPARGPPFP-------GISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERP 243
+ + A GPP P G G + GPV G P A G+ G +
Sbjct: 1312 GESGPSGAAGPPGPKGPPGDDGPKG-SPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGE 1370
Query: 244 ARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
P G G GPPG P GP
Sbjct: 1371 PGQTGSPGPTGEPGPSGPPGKRGPPGPAGP 1400
Score = 38.9 bits (89), Expect = 0.006
Identities = 61/215 (28%), Positives = 76/215 (35%), Gaps = 21/215 (9%)
Query: 64 PDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSR 123
P ++ +G TG +G RG P PG +G P AG+ T+ P L
Sbjct: 995 PPGVVGPQGPTGETGPMGERGHPGPPGPPGE-QGLPGLAGKEG---TKGDPGPAGLPGKD 1050
Query: 124 AAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDR--RAPVFPTLVPLHHGPPGAS 181
P LRG P V A G G+ P P P GP GA+
Sbjct: 1051 GPPGLRG------------FPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAA 1098
Query: 182 G-VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG 240
G +G Q PA PG G +GP G+ P A P GE G
Sbjct: 1099 GPIGIPGRPGPQGPPGPAGEKGAPGEKG-PQGPAGRDGLQGPVGLPGPAGPVGPPGEDGD 1157
Query: 241 ERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PG 274
+ + + G G GPPG P IG PG
Sbjct: 1158 KGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPG 1192
Score = 35.4 bits (80), Expect = 0.063
Identities = 66/302 (21%), Positives = 92/302 (30%), Gaps = 49/302 (16%)
Query: 5 PRSPAPGLGGSKKTGEKR----------PAQTLQRTPRKHAASRGQAQAAAAALTPSLIP 54
P+ P G+G GEK P + P+ +G++ + AA P
Sbjct: 1268 PQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPG--- 1324
Query: 55 RAAIRQSQAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQR 114
+ P +G G V G G P GP GPP G G P +
Sbjct: 1325 ------PKGPPGDDGPKGSPGPVGFPGDPGPP-GEPGPAGQDGPPGDKGDD-GEPGQTGS 1376
Query: 115 RPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAA-GKGGDRRAPVFPTLVPL 173
P + P + P P+ + + + + GK G P+ P P
Sbjct: 1377 PGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTG----PIGPQGAPG 1432
Query: 174 HHGPPGASGVGSERDRKFQLHQTPARGPP----------------------FPGISGMTR 211
GP G G+ + GPP PG+ G+
Sbjct: 1433 KPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLI- 1491
Query: 212 GPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSI 271
GP G P S GE G P+ + P PG G GP G +
Sbjct: 1492 GPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPT 1551
Query: 272 GP 273
GP
Sbjct: 1552 GP 1553
Score = 35.4 bits (80), Expect = 0.063
Identities = 53/194 (27%), Positives = 66/194 (34%), Gaps = 16/194 (8%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRG 130
RG G G +G A +G GPP K G P +P P R P G
Sbjct: 1392 RGPPGPAGPEGRQGEKGA-KGEAGLEGPPGKTGPIG--PQGAPGKPGP-DGLRGIPGPVG 1447
Query: 131 EEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRK 190
E+ P P + G G + P L+ L GPPG G +R
Sbjct: 1448 EQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLI-GPPGEQGEKGDRGLP 1506
Query: 191 FQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA-SPSRSLGEAGGERPARALRR 249
+ +G GI+G + GP+ G PPG P G G P
Sbjct: 1507 GPQGSSGPKGEQ--GITGPS-GPIGPPG-------PPGLPGPPGPKGAKGSSGPTGPKGE 1556
Query: 250 PRAPGRAGGGGPPG 263
PG G GPPG
Sbjct: 1557 AGHPGPPGPPGPPG 1570
Score = 34.7 bits (78), Expect = 0.11
Identities = 71/252 (28%), Positives = 85/252 (33%), Gaps = 59/252 (23%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAG-RAAGSPT--RVQRRPRPLRPSRAAPRL 128
G G ++G G P A G GRG P K G R PT R +R PR + + P+
Sbjct: 877 GRQGPKGSIGFPGFPGA-NGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGIT-GKPGPKG 934
Query: 129 RGEEPSLLRPQLSRRPRALRRSTRVPAA-------GKGG--------------DRRAPVF 167
P R P + T P GK G + P
Sbjct: 935 NSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPG 994
Query: 168 PTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPP----FPGISGMTR-----GPVVLSG 218
P V GP G +G ER H P GPP PG++G GP L G
Sbjct: 995 PPGVVGPQGPTGETGPMGERG-----HPGPP-GPPGEQGLPGLAGKEGTKGDPGPAGLPG 1048
Query: 219 VNRQHRWPPGA----------SPSRSLGEAGGERPARALRRPRAPGR---AGGGGPPG-G 264
+ PPG P +LG G E P +PG AG GP G
Sbjct: 1049 KDG----PPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIP 1104
Query: 265 GIPACSIGPGLA 276
G P PG A
Sbjct: 1105 GRPGPQGPPGPA 1116
Score = 33.1 bits (74), Expect = 0.31
Identities = 42/131 (32%), Positives = 52/131 (39%), Gaps = 38/131 (29%)
Query: 182 GVGSERDRKFQLHQTPA--------RGPPFPGISGMTRGPVVLSGVNRQHRWPPGA-SPS 232
G+G R K Q + PA GPP P GP L G PPG P+
Sbjct: 444 GIGGPRGEKGQKGE-PAIIEPGMLIEGPPGP------EGPAGLPG-------PPGTMGPT 489
Query: 233 RSLGEAGGERPARALRRPRAPGRAGGGGPP----------GGGIPACSIGPGLARLAALG 282
+G+ G P RP PG G GPP GGG A S GP ++ A
Sbjct: 490 GQVGDPGERGPPG---RPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVS--AQES 544
Query: 283 GLPSILESSRL 293
+IL+ +RL
Sbjct: 545 QAQAILQQARL 555
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 51.2 bits (121), Expect = 1e-06
Identities = 51/176 (28%), Positives = 67/176 (38%), Gaps = 25/176 (14%)
Query: 92 PGRGRGPPN---------KAGRAAGSPTRVQRRPRPLRPSRA---APRLRG-EEPSLLRP 138
P RG+ P+ + GRAAG R +RR R R SR+ APR RG P P
Sbjct: 357 PARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPP 416
Query: 139 QLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQTPA 198
+ S R + RS+ +G+G P G G +R ++ PA
Sbjct: 417 RGSSRSLSRARSSSDSGSGRGAPGPGP--------EPGSERGHGGHGKRAKERPPRARPA 468
Query: 199 RGPPFPGISGMTRGPVVLSGVN----RQHRWPPGASPSRSLGEAGGERPARALRRP 250
P PG G GP S W SPS+S + +RP R P
Sbjct: 469 STSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPHSPSRSP 524
Score = 35.4 bits (80), Expect = 0.063
Identities = 55/234 (23%), Positives = 90/234 (38%), Gaps = 35/234 (14%)
Query: 11 GLGGSKKTGEKRP--AQTLQRTPRKHA-ASRGQAQAAAAALTPSLIPRAAIRQSQAPDLL 67
G GG K ++RP A+ +P A RG + +++ +P PR+ S++P
Sbjct: 450 GHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSW-SSSRSPS-- 506
Query: 68 LASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPR 127
SR + SP + R + +A + TR +RR R P R +
Sbjct: 507 -KSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPIR---K 562
Query: 128 LRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSER 187
R + PS + P+ R+ +A R+ P +P + P +S
Sbjct: 563 RRRDSPSFMEPR------------RITSA-----RKRP-----IPYYRPSPSSSSSCLSS 600
Query: 188 DRKFQLH-QTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG 240
D + H ++P+ G S + G S R P + SRS E+GG
Sbjct: 601 DYSTRSHSRSPSPGHSHGSYSSRSHG--TRSRTRSPSRTPSPSYHSRSSSESGG 652
Score = 30.0 bits (66), Expect = 2.6
Identities = 57/233 (24%), Positives = 77/233 (33%), Gaps = 53/233 (22%)
Query: 81 GHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPR-----------PLRPSRAAPRLR 129
GHRG PP K + G R +++ R PLR + + +
Sbjct: 150 GHRGYRTKHWSSSSASPPPKKKKKKKGGHRRSRKKRRLESECSCGSSSPLRKKKKSVKKH 209
Query: 130 GEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDR 189
+ S + RR R+ RS++ K +++ P H PG R
Sbjct: 210 RRDRSDSGSRRKRRHRS--RSSKCKRKEKNKEKKRP--------HTESPG---------R 250
Query: 190 KFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPS-RSLGEAGGERPARALR 248
+ H SG + P LS R P SP R G G + + R
Sbjct: 251 RSHRHS-----------SGSSHSPS-LSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSR 298
Query: 249 RPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILES---SRLLPSPR 298
P G +G G P G G G R A GG P S PSPR
Sbjct: 299 SPSPSGGSGWGSPQRNG------GSG-QRSGAHGGRPGSAHSPPDKPSSPSPR 344
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 50.8 bits (120), Expect = 1e-06
Identities = 83/294 (28%), Positives = 98/294 (33%), Gaps = 44/294 (14%)
Query: 5 PRSPAPGLGGSKKTGEK----RPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQ 60
P PA GG GE RP + P A +G A A P
Sbjct: 897 PPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPG--------- 947
Query: 61 SQAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLR 120
+ P + RG+ G G RG P + GP G P K G + S R P P+
Sbjct: 948 TPGPQGIAGQRGVVGLPGQRGERGFP-GLPGPS---GEPGKQGPSGASGERGP--PGPMG 1001
Query: 121 PSRAA--PRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDR--RAPVFPTLVPLHHG 176
P A P G E + P A R + G GDR P P P G
Sbjct: 1002 PPGLAGPPGESGREGA---------PGAEGSPGRDGSPGAKGDRGETGPAGPPGAP---G 1049
Query: 177 PPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLG 236
PGA G + +T GP P RGP G R + G R +
Sbjct: 1050 APGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP-RGDKGETGEQGDRGIK 1108
Query: 237 EAGGERPARALRRPRAP-GRAGGGGPPGGGIPACSIGP----GLARLAALGGLP 285
G R L+ P P G G GP G PA GP G L GLP
Sbjct: 1109 ---GHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLP 1159
Score = 49.7 bits (117), Expect = 3e-06
Identities = 74/240 (30%), Positives = 86/240 (35%), Gaps = 42/240 (17%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGR--AAGSPTRVQRR-----PRPLRPSR- 123
G TG A G RG P GP GPP G+ A G P + P P P+
Sbjct: 791 GPTGARGAPGDRGEP-GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGP 849
Query: 124 -------AAPRLRGEEPSLLRPQLSRRPRALRR-------------STRVPAAGKGGDR- 162
AP +G S P + P A R PA +GG
Sbjct: 850 PGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGP 909
Query: 163 RAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNR 221
R P P GPPG G E+ A G P P GI+G RG V L G
Sbjct: 910 RGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQ-RGVVGLPGQRG 968
Query: 222 QHRWPPGASPSRSLGEAGGERPARAL--RRPRAP-GRAGGGGPPG----GGIPACSIGPG 274
+ +P PS GE G + P+ A R P P G G GPPG G P PG
Sbjct: 969 ERGFPGLPGPS---GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPG 1025
Score = 47.8 bits (112), Expect = 1e-05
Identities = 76/253 (30%), Positives = 94/253 (37%), Gaps = 36/253 (14%)
Query: 35 AASRGQAQAAAAALTPSLIPRAAIRQSQAPDLLLASRGITGCVNALGHRGS--PEAVRGP 92
A +RG A AA P A P + G G G RGS P+ VRG
Sbjct: 319 AGARGNDGATGAAGPPGPTGPAG------PPGFPGAVGAKGEAGPQGPRGSEGPQGVRGE 372
Query: 93 GRGRGPPNKAGRA--AGSPTRVQRRPRPLRPSRAAPRLRGEE-------PSLLRPQLSRR 143
GPP AG A AG+P +P + + AP + G PS PQ
Sbjct: 373 P---GPPGPAGAAGPAGNPG-ADGQPGA-KGANGAPGIAGAPGFPGARGPS--GPQGPGG 425
Query: 144 PRALRRSTRVPAA-GKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPP 202
P + ++ P A G GD A P V + GPPG +G +R + + T GPP
Sbjct: 426 PPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQ-GPPGPAGEEGKRGARGEPGPTGLPGPP 484
Query: 203 FPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPP 262
+RG GV A P GE G PA P GR G G P
Sbjct: 485 GERGGPGSRGFPGADGV---------AGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLP 535
Query: 263 GG-GIPACSIGPG 274
G G+ PG
Sbjct: 536 GAKGLTGSPGSPG 548
Score = 45.1 bits (105), Expect = 8e-05
Identities = 67/225 (29%), Positives = 79/225 (35%), Gaps = 37/225 (16%)
Query: 81 GHRGSPEAVRGPGRGRGPPNKAGR-----AAGSPTRV-QRRPRPLRPSRAAPRLRGEEPS 134
G G P A GP RGPP G+ AG P R +R P + +R P G
Sbjct: 206 GEPGEPGA-SGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGM 264
Query: 135 LLRPQLSRRPRALRRSTRVPAAGKG-----GDRRAP--VFPTLVPLHHGPPGASGVGSER 187
S A + PA KG G+ AP + P +P G PGA G R
Sbjct: 265 KGHRGFSGLDGA--KGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 322
Query: 188 DRKFQLHQTPARGPP----------FPGISGMT--------RGPVVLSGVNRQHRWPPGA 229
T A GPP FPG G RG GV + P A
Sbjct: 323 GND---GATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPA 379
Query: 230 SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 274
+ G G + A APG AG G PG P+ GPG
Sbjct: 380 GAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPG 424
Score = 44.7 bits (104), Expect = 1e-04
Identities = 79/295 (26%), Positives = 97/295 (32%), Gaps = 44/295 (14%)
Query: 4 KPRSPAPGLGGSK-KTGEK-RPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQS 61
K S PG GSK TG K P + P A G+ A L R
Sbjct: 430 KGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGG 489
Query: 62 QAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRA--AGSPTRVQRRPRPL 119
+ G+ G G RGSP GP +G P +AGR AG P P
Sbjct: 490 PGSRGFPGADGVAGPKGPAGERGSP----GPAGPKGSPGEAGRPGEAGLPGAKGLTGSPG 545
Query: 120 RPS----RAAPRLRGEE--PSLLRPQLSRRPRALRRSTRVPAA----GKGGDRRAPVFPT 169
P P G++ P P +R + A GK G+R P
Sbjct: 546 SPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVP---- 601
Query: 170 LVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA 229
GPPGA G + + A+GPP P RG +G P A
Sbjct: 602 ------GPPGAVGPAGKDG------EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPA 649
Query: 230 SPSRSL---------GEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PG 274
P G+ G P+ A PG G GPPG P + G PG
Sbjct: 650 GPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPG 704
Score = 43.9 bits (102), Expect = 2e-04
Identities = 60/221 (27%), Positives = 71/221 (32%), Gaps = 56/221 (25%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGE 131
G+ G G G+P A PGR P K R P P AP G
Sbjct: 1004 GLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP-------GAPGAPGP 1056
Query: 132 EPSLLRPQLSRRPRALRRSTRVPAAGKGGDR--------RAPVFPTLVPLHHGPPGASG- 182
V AGK GDR PV P GP G G
Sbjct: 1057 ---------------------VGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGD 1095
Query: 183 ---VGSERDRKFQLHQ--TPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGAS------- 230
G + DR + H+ + +GPP P S +GP SG R PPG++
Sbjct: 1096 KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASG-PAGPRGPPGSAGAPGKDG 1154
Query: 231 ------PSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGG 265
P G G A + P PG G GPP G
Sbjct: 1155 LNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAG 1195
Score = 43.1 bits (100), Expect = 3e-04
Identities = 67/219 (30%), Positives = 75/219 (34%), Gaps = 36/219 (16%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPR---- 127
G TG A G G P G GPP AG+ G R + P RP P
Sbjct: 872 GATGFPGAAGRVGPP-GPSGNAGPPGPPGPAGKEGGKGPRGETGPAG-RPGEVGPPGPPG 929
Query: 128 LRGEE-----------PSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFP--TLVPLH 174
GE+ P PQ R + V G+ G+R P P + P
Sbjct: 930 PAGEKGSPGADGPAGAPGTPGPQGIAGQRGV-----VGLPGQRGERGFPGLPGPSGEPGK 984
Query: 175 HGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRS 234
GP GASG ER + GPP G SG P R PGA R
Sbjct: 985 QGPSGASG---ERGPPGPMGPPGLAGPP--GESGREGAPGAEGSPGRDGS--PGAKGDR- 1036
Query: 235 LGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP 273
GE G P A P APG G GP G GP
Sbjct: 1037 -GETGPAGPPGA---PGAPGAPGPVGPAGKSGDRGETGP 1071
Score = 41.6 bits (96), Expect = 9e-04
Identities = 63/226 (27%), Positives = 75/226 (33%), Gaps = 32/226 (14%)
Query: 72 GITGCVNALGHRGSP--EAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLR 129
G G A G RG P V+GP GP G + S+ AP L+
Sbjct: 668 GAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQ 727
Query: 130 GEE-----PSLLRPQLSRRPRALRRSTRVPAAGKGGDR--RAPVFPTLVPLHHGPPGASG 182
G L P+ R + + P GK G R P+ P GP GA G
Sbjct: 728 GMPGERGAAGLPGPKGDRGDAGPKGADGSP--GKDGVRGLTGPIGPP------GPAGAPG 779
Query: 183 VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWP-----PG-------AS 230
E T ARG P GP +G P PG A
Sbjct: 780 DKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAG 839
Query: 231 PSRSLGEAGGERPARALRRPRAPGRAGGGGPPGG-GIPACS--IGP 273
P G AG P + P A G G GPPG G P + +GP
Sbjct: 840 PPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGP 885
Score = 40.8 bits (94), Expect = 0.001
Identities = 66/254 (25%), Positives = 81/254 (31%), Gaps = 59/254 (23%)
Query: 73 ITGCVNALGHRG--SPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRP-------------- 116
+ G + G RG P GP +GPP + G S R P
Sbjct: 177 VPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAG 236
Query: 117 RPLRPSRAAPRLRGEEPSLLRPQLSRRPRAL----------RRSTRVPAAGKG-----GD 161
+P RP P G + + P + P + PA KG G+
Sbjct: 237 KPGRPGERGP--PGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGE 294
Query: 162 RRAP--VFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV 219
AP + P +P G PGA G R T A GPP P GP G
Sbjct: 295 NGAPGQMGPRGLPGERGRPGAPGPAGARGND---GATGAAGPPGP------TGPAGPPGF 345
Query: 220 NRQHRWPPGASPSRS----LGEAGGERPARALRRPRAPGRAGGGGPPGG----GIPACSI 271
PGA ++ G G E P P PG AG GP G G P
Sbjct: 346 -------PGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKG 398
Query: 272 GPGLARLAALGGLP 285
G +A G P
Sbjct: 399 ANGAPGIAGAPGFP 412
Score = 40.4 bits (93), Expect = 0.002
Identities = 77/259 (29%), Positives = 89/259 (34%), Gaps = 61/259 (23%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGR--AAGS-----------PTRVQRRPRP 118
GI G G RG P +GPG GP +G A GS P VQ P P
Sbjct: 404 GIAGAPGFPGARG-PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462
Query: 119 L-----RPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAA----GKGGDRRAPVFPT 169
R +R P G L P R R G G+R +P
Sbjct: 463 AGEEGKRGARGEPGPTG----LPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSP---- 514
Query: 170 LVPLHHGPPGASGVGSERDRKFQLHQTPARG----PPFPGISGMTRGPVVLSGVNRQHR- 224
GP G G E R + A+G P PG G T GP +G + +
Sbjct: 515 ------GPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKT-GPPGPAGQDGRPGP 567
Query: 225 -WPPGA----------SPSRSLGEAG--GER----PARALRRPRAPGRAGGGGPPGGGIP 267
PPGA P + GE G GER P A+ G AG GPPG P
Sbjct: 568 PGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP 627
Query: 268 ACSIG-PGLARLAALGGLP 285
A G G A GLP
Sbjct: 628 AGERGEQGPAGSPGFQGLP 646
Score = 40.0 bits (92), Expect = 0.003
Identities = 88/296 (29%), Positives = 104/296 (35%), Gaps = 58/296 (19%)
Query: 1 MTAKPRSPAPGLGGSKKTGEKRPA-QTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIR 59
+T P SP P KTG PA Q + P +RGQA P P+ A
Sbjct: 540 LTGSPGSPGP----DGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGF---PG--PKGAAG 590
Query: 60 QSQAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRA--------AGSPTR 111
+ RG+ G A+G G G +GPP AG A AGSP
Sbjct: 591 EPGKA----GERGVPGPPGAVGPAGKD----GEAGAQGPPGPAGPAGERGEQGPAGSPG- 641
Query: 112 VQRRPRPLRPSRAA--PRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDR--RAPVF 167
Q P P P A P +G L P P R P G+R + P
Sbjct: 642 FQGLPGPAGPPGEAGKPGEQGVPGDLGAPG----PSGARGERGFP-----GERGVQGPPG 692
Query: 168 PTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPP-FPGISGMT--RGPVVLSGV--NRQ 222
P GP GA+G K A G PG+ GM RG L G +R
Sbjct: 693 PA------GPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRG 746
Query: 223 HRWPPGASPSRSLGEAGGERPARALRRPRAP-GRAGGGGPPGGGIPACSIGPGLAR 277
P GA S G+ R L P P G AG G G P+ GP AR
Sbjct: 747 DAGPKGADGSP------GKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGAR 796
Score = 32.3 bits (72), Expect = 0.53
Identities = 39/119 (32%), Positives = 44/119 (36%), Gaps = 18/119 (15%)
Query: 149 RSTRVPAAGKGGDRRAPVFPTLV--PLHHGPPGASGVGSE--RDRKFQLHQTPARGPPFP 204
R R PA G D P P L P GPPG G+G + + G P
Sbjct: 120 RGPRGPAGPPGRDG-IPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVP 178
Query: 205 GISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 263
G G + GP L G PPGA G G + P P A G G GPPG
Sbjct: 179 GPMGPS-GPRGLPG-------PPGAP-----GPQGFQGPPGEPGEPGASGPMGPRGPPG 224
Score = 28.5 bits (62), Expect = 7.7
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 176 GPPGASGVGSERDRKFQLHQTPAR-GPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRS 234
GPPG G+ + L P GPP P G P + G + + G S
Sbjct: 127 GPPGRDGIPGQPG----LPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTG--GISVPGP 180
Query: 235 LGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGP 273
+G +G P P APG G GPPG G P S GP
Sbjct: 181 MGPSG---PRGLPGPPGAPGPQGFQGPPGEPGEPGAS-GP 216
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 50.1 bits (118), Expect = 2e-06
Identities = 97/343 (28%), Positives = 121/343 (35%), Gaps = 67/343 (19%)
Query: 5 PRSPAPGLGGSKKT--GEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQ 62
PR P P T K+P TL RT K S A+A T P A+ S
Sbjct: 433 PRPPPPSTRPLPPTTSSSKKPIPTLARTEAK-ITSHASKPASARTSTHKPPPFTALSSSP 491
Query: 63 APD--LLLASRGITGCVNALGHRGSPE---AVRGPGR---GRGPP--NKAGRAAGSPTRV 112
AP ++R V +P AV PG G P ++A + AG P
Sbjct: 492 APTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKAG-PKSS 550
Query: 113 QRRPRPLRPSRAA-----------PRLRGEEPS-LLRPQLSRRP-RALRRSTRVPAAGKG 159
R+P PLRP +AA P R +PS P L P + L S R ++G
Sbjct: 551 PRKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPAQFLSSSPRPTSSGYS 610
Query: 160 GDRRAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPP-FPGISGM--TRGPVVL 216
A P PL GPPG G GPP PG+ G+ RGP
Sbjct: 611 IFHLAGSTP--FPLLMGPPGPKG------------DCGLPGPPGLPGLPGIPGARGPRGP 656
Query: 217 SGV-----------NRQHRWPPGASPSRSLGEAGGERPARALR-RPRAPGRAGGGGPPG- 263
G + + PG SP ++ A G+ L P PGR G G PG
Sbjct: 657 PGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGP 716
Query: 264 ------GGIPACSIGPGLARLAALGGLPSILESSRLLPSPRSS 300
G P PG GLP + P P+ S
Sbjct: 717 AGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGD----PGPKGS 755
Score = 43.5 bits (101), Expect = 2e-04
Identities = 57/203 (28%), Positives = 74/203 (36%), Gaps = 53/203 (26%)
Query: 67 LLASRGITGCVNALGHRGSPEAVRGPGR--GRGPPNKAGRAAGSPTRVQRRPRPLRPSRA 124
++ G+ G ++GH G P + PG +GPP SR
Sbjct: 1016 MMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPG---------------------SRG 1054
Query: 125 APRLRGEEPSLLRPQLSRRPRALRRSTRVP--AAGKGGDR--RAPVFPTLVPLHHGPPGA 180
P +RG + RR R P AG+ G R + P P P G PG
Sbjct: 1055 PPGMRGAKG--------------RRGPRGPDGPAGEQGSRGLKGPPGPQGRP---GRPGQ 1097
Query: 181 SGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG 240
GV ER +RG FPGI G + GP G+ + P GE G
Sbjct: 1098 QGVAGERG------HLGSRG--FPGIPGPS-GPPGTKGLPGEPGPQGPQGPIGPPGEMGP 1148
Query: 241 ERPARALRRPRAPGRAGGGGPPG 263
+ P A+ P PG AG G G
Sbjct: 1149 KGPPGAVGEPGLPGEAGMKGDLG 1171
Score = 40.8 bits (94), Expect = 0.001
Identities = 65/222 (29%), Positives = 78/222 (35%), Gaps = 37/222 (16%)
Query: 52 LIPRAAIRQSQAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTR 111
++ R + PD L G G G G P + GP RG P AG
Sbjct: 1431 VVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPM-GPAGKRGNPGVAGLPGAQGPP 1489
Query: 112 VQRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLV 171
+ L P RG E P P + G+ GD FP +
Sbjct: 1490 GFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGS---------KGQPGDSGEMGFPGMA 1540
Query: 172 PLHHGPPGASGVGSERDRKFQLHQTPARGPP-FPGISGMTRGPVVLSGVNRQHRWPPGAS 230
L GP G G D F+ Q P RGPP G G+ GP+ + G
Sbjct: 1541 GLF-GPKGPPG-----DIGFKGIQGP-RGPPGLMGKEGIV-GPLGILG------------ 1580
Query: 231 PSRSLGEAG--GERPARALRRPRAP----GRAGGGGPPGGGI 266
PS G G G R L+ PR P GR G GPPGG I
Sbjct: 1581 PSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPI 1622
Score = 35.8 bits (81), Expect = 0.048
Identities = 71/283 (25%), Positives = 107/283 (37%), Gaps = 57/283 (20%)
Query: 22 RPAQTLQRTPRKHAASRGQAQ--------AAAAALTPSLIPRAAIRQSQAPDLLLA--SR 71
+P +T P +H A G AQ +A+ AL P ++P + ++ P A S+
Sbjct: 299 KPQRTSPTNPHQHMAVGGPAQTPLLPAKLSASNALDP-MLPASVGGSTRTPRPAAAQPSQ 357
Query: 72 GITGCVNALGHRGSPEA-------VRGPGRGRGPPNKAGRAAGSPTRVQ----RRPRPLR 120
IT P A ++ P + + + PT+ Q RP P R
Sbjct: 358 KITATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPAR 417
Query: 121 PSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTL------VPLH 174
SR A E+P P + R P STR P + P+ PTL + H
Sbjct: 418 VSRPA-----EKPIQRNPGMPRPPPP---STR-PLPPTTSSSKKPI-PTLARTEAKITSH 467
Query: 175 HGPPGASGVGSERDRKF-QLHQTPARGPPFPGISGMTRGPVVL----SGVNRQHRWP--- 226
P ++ + + F L +PA P PG + TR P + SG + P
Sbjct: 468 ASKPASARTSTHKPPPFTALSSSPA---PTPGSTRSTRPPATMVPPTSGTSTPRTAPAVP 524
Query: 227 -PGASPSRSLGEAGGERPARALRR-------PRAPGRAGGGGP 261
PG++P+ S G E +A + P PG+A P
Sbjct: 525 TPGSAPTGSKKPIGSEASKKAGPKSSPRKPVPLRPGKAARDVP 567
Score = 35.4 bits (80), Expect = 0.063
Identities = 61/216 (28%), Positives = 84/216 (38%), Gaps = 30/216 (13%)
Query: 71 RGITGCVNALGHRGSP--EAVRGPGRGRGPPNKAG-RAAGSPTRVQRRPRPLRPSRAA-- 125
+G+ G LG RG P GP +G P + G + P P P A
Sbjct: 1098 QGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGE 1157
Query: 126 PRLRGEEPSL--LRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGV 183
P L GE L P + + L P G GD P+ P + G PG G
Sbjct: 1158 PGLPGEAGMKGDLGPLGTPGEQGLIGQRGEP--GLEGDS-GPMGPDGLKGDRGDPGPDGE 1214
Query: 184 GSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRS----LGEAG 239
E+ ++ + + GPP G++G+ RGP SG + + GA ++ LGE G
Sbjct: 1215 HGEKGQEGLMGEDGPPGPP--GVTGV-RGPEGKSG-KQGEKGRTGAKGAKGYQGQLGEMG 1270
Query: 240 -----------GERPARALRRPR-APGRAGGGGPPG 263
G + +R P APGR G G PG
Sbjct: 1271 VPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPG 1306
Score = 34.3 bits (77), Expect = 0.14
Identities = 59/216 (27%), Positives = 72/216 (33%), Gaps = 35/216 (16%)
Query: 70 SRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAA--GSPTRVQRRPRPLRPSRAAPR 127
+RG+ G LG G E GP G + GR G P + P P R P
Sbjct: 932 ARGLPGPRGQLGPEGD-EGPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPGDPGRPGPV 990
Query: 128 LRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSER 187
GE+ + L P + G+ GDR GPPG G
Sbjct: 991 --GEQGFMGFIGLVGEPGIV---------GEKGDRGMM----------GPPGVPGPKGSM 1029
Query: 188 DRKFQLHQTPARGPPFPGISGMTRGPVVLSGVN--RQHRWPPGASPSRSLGEAGGERPAR 245
G P P +RGP + G R R P G P+ G G + P
Sbjct: 1030 GHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDG--PAGEQGSRGLKGPPG 1087
Query: 246 ALRRPRAPGRAGGGGPPG-------GGIPACSIGPG 274
RP PG+ G G G GIP S PG
Sbjct: 1088 PQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPG 1123
Score = 33.5 bits (75), Expect = 0.24
Identities = 62/225 (27%), Positives = 81/225 (36%), Gaps = 38/225 (16%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGRGPPN----KAGRAAGSPTRVQRRPRPLRPSRAAP 126
+G TG A G++G + PG GPP K R + PT R ++ P
Sbjct: 1251 KGRTGAKGAKGYQGQLGEMGVPG-DPGPPGTPGPKGSRGSLGPTGAPGR----MGAQGEP 1305
Query: 127 RLRGEE--PSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASG-V 183
L G + ++ P P+ + G+ G P GPPG G V
Sbjct: 1306 GLAGYDGHKGIVGPLGPPGPKGEKGEQ-----GEDGKAEGPP---------GPPGDRGPV 1351
Query: 184 GSERDRKFQLHQTPARGPPFPGISGMT--RGPVVLSGVNRQHRWPPGASPSRSLGEAGGE 241
G DR P +PG G+ RG G H P G + G G E
Sbjct: 1352 GDRGDRG------EPGDPGYPGQEGVQGLRGKPGQQG-QPGHPGPRGWPGPK--GSKGAE 1402
Query: 242 RPARALRRPRAPGRAGGGGPPGGGIPACSIG-PGLARLAALGGLP 285
P + APGR G G G P +G GL +A GLP
Sbjct: 1403 GPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLP 1447
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 49.7 bits (117), Expect = 3e-06
Identities = 63/222 (28%), Positives = 77/222 (34%), Gaps = 19/222 (8%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAA--GSPTRVQRRPRPLRPSR----AA 125
G G A G RG+P RGP G P + G A G+P R P R
Sbjct: 474 GANGLPGAAGERGAP-GFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGG 532
Query: 126 PRLRGEEPSLLRPQLSRRPR---ALRRSTRVPAAGKGGDRRAPV---FPTL-----VPLH 174
P +RG S P +P + S R G G R P FP P
Sbjct: 533 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK 592
Query: 175 HGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRS 234
+G G G + + +T +GPP P G +G G P P
Sbjct: 593 NGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGE 652
Query: 235 LGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGL 275
G+ G P P APG G G PG G P + PGL
Sbjct: 653 NGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGL 694
Score = 49.7 bits (117), Expect = 3e-06
Identities = 76/266 (28%), Positives = 93/266 (34%), Gaps = 56/266 (21%)
Query: 67 LLASRGITGCVNALGHRGSP--EAVRG----PGRG-----RGPPNKAGR-----AAGSPT 110
+ +RG+ G G RGSP + V+G PG RGPP G AG P
Sbjct: 952 ITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPG 1011
Query: 111 RVQRRPRPLRPSR-AAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDR--RAPVF 167
R P R +P +G+ P P V AGK GDR P
Sbjct: 1012 RDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAG 1071
Query: 168 PTLVPLHHGPPGASGVGSERDRKFQLHQTPARG-------------PPFPGISGMT---- 210
P P G GA G R K + + A G P PG +G
Sbjct: 1072 PAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIG 1131
Query: 211 -------RGPVVLSGVNRQ-----HRWPPGA-SPSRSLGEAGGERPARALRRPRAPGRAG 257
RGPV SG + H P G P + GE G E +P PG G
Sbjct: 1132 SPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPG 1191
Query: 258 GGGPPGGGIPACSIGPGLARLAALGG 283
GP GG+ G A +A +GG
Sbjct: 1192 APGPCCGGV-------GAAAIAGIGG 1210
Score = 46.2 bits (108), Expect = 4e-05
Identities = 65/219 (29%), Positives = 79/219 (36%), Gaps = 16/219 (7%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAA--GSP-TRVQRRPRPLRPSRAAPR 127
RG G A G RG+ + RG GPP G A GSP + + P S AP
Sbjct: 308 RGRPGLPGAAGARGN-DGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPG 366
Query: 128 LRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHH--GPPGASGVGS 185
RGE P + G+ G P P L+ GP GA+G
Sbjct: 367 QRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPG 426
Query: 186 ERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHR-WPPGASPSRSLGEAGGERP 243
R + + A+G P P G G P V + PG + L A GER
Sbjct: 427 LRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERG 486
Query: 244 ARALRRPRAP-------GRAGGGGPPGGGIPACSIG-PG 274
A R P P G AG G PG P + G PG
Sbjct: 487 APGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPG 525
Score = 42.0 bits (97), Expect = 7e-04
Identities = 68/222 (30%), Positives = 76/222 (34%), Gaps = 33/222 (14%)
Query: 55 RAAIRQSQAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQR 114
R R P + GI G GHRG + G G P G G P
Sbjct: 238 RPGERGLPGPPGIKGPAGIPGFPGMKGHRGF-DGRNGEKGETGAPGLKGEN-GLPGE-NG 294
Query: 115 RPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLH 174
P P+ P R AP RG RP L P A A G G P
Sbjct: 295 APGPMGP-RGAPGERG------RPGL---PGAAGARGNDGARGSDGQPGPP--------- 335
Query: 175 HGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRS 234
GPPG +G K ++ PA P G G P Q PPG P
Sbjct: 336 -GPPGTAGFPGSPGAKGEVG--PAGSPGSNGAPGQRGEPGPQGHAGAQG--PPG--PPGI 388
Query: 235 LGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PGL 275
G GG+ P APG G GPPG PA + G PGL
Sbjct: 389 NGSPGGKGEMGPAGIPGAPGLMGARGPPG---PAGANGAPGL 427
Score = 40.8 bits (94), Expect = 0.001
Identities = 88/320 (27%), Positives = 103/320 (32%), Gaps = 44/320 (13%)
Query: 9 APGLGGSK----KTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQAP 64
APG G K GE+ P + A + A P P AA P
Sbjct: 667 APGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAA----GTP 722
Query: 65 DL--LLASRGITGCVNALGHRGSP-----EAVRGPGRGRGPPNKAGRA--AGSPTRVQRR 115
L + RG G G +G P + V G RGP G AG P
Sbjct: 723 GLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEG 782
Query: 116 PRPLRPSRAAPR-LRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAP--------- 165
P P A PR GE P + P A ++ G G+R AP
Sbjct: 783 GAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGE---PGGKGERGAPGEKGEGGPP 839
Query: 166 --VFPTLVPLHHGPPGASGVGSERDRKFQLHQTP---ARGPPFPGISGMTRGPVVLSGVN 220
P GPPG GV ER ARG P P S GP SG
Sbjct: 840 GVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSP 899
Query: 221 RQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAA 280
+ P A + + G G P +P G G GPPG P G AR
Sbjct: 900 GKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGAR--G 957
Query: 281 LGGLPSILESSRLLPSPRSS 300
L G P +P PR S
Sbjct: 958 LAGPPG-------MPGPRGS 970
Score = 32.7 bits (73), Expect = 0.41
Identities = 36/102 (35%), Positives = 41/102 (40%), Gaps = 37/102 (36%)
Query: 176 GPPGASG-VGSERDRKFQLHQTPARGPPF-PGISGMTRGPVVLSGVNRQHRWPPGA---- 229
GPPG SG GS +Q GPP PG +G + P PPGA
Sbjct: 183 GPPGTSGHPGSPGSPGYQ-------GPPGEPGQAGPSGPP-----------GPPGAIGPS 224
Query: 230 SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG----GGIP 267
P+ GE+G RP PG G GPPG GIP
Sbjct: 225 GPAGKDGESG---------RPGRPGERGLPGPPGIKGPAGIP 257
Score = 32.0 bits (71), Expect = 0.69
Identities = 46/154 (29%), Positives = 52/154 (33%), Gaps = 18/154 (11%)
Query: 31 PRKHAASRGQAQAAAAALTPSLIPRAAIRQSQAPDLLLASRGITGCVNALGHRGSPEAVR 90
P + RG++ A A P Q P G G GHRG P
Sbjct: 1057 PAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPG 1116
Query: 91 GPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGE--EPSLLRPQLSRRPRALR 148
PG GP + G A GSP R P+ PS P G P + P R R R
Sbjct: 1117 APG-SPGPAGQQG-AIGSPGPAGPR-GPVGPS-GPPGKDGTSGHPGPIGPPGPRGNRGER 1172
Query: 149 RSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASG 182
S P G G P GPPGA G
Sbjct: 1173 GSEGSP--GHPGQPGPP----------GPPGAPG 1194
Score = 30.0 bits (66), Expect = 2.6
Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 226 PPGASPSR-SLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGP-GLARLAALGG 283
PPG S S G G + P P PG+AG GPPG P +IGP G A G
Sbjct: 184 PPGTSGHPGSPGSPGYQGP------PGEPGQAGPSGPPG---PPGAIGPSGPAGKDGESG 234
Query: 284 LPSILESSRLLPSP 297
P R LP P
Sbjct: 235 RPG-RPGERGLPGP 247
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 48.5 bits (114), Expect = 7e-06
Identities = 70/227 (30%), Positives = 82/227 (36%), Gaps = 28/227 (12%)
Query: 71 RGITGCVNALGHRGSP-----EAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAA 125
RG G LG RG P +GP GPP G +AG P R R P A
Sbjct: 327 RGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPG-SAGLPGR---RGPPGPKGEAG 382
Query: 126 PRLRGEEPSLLRPQLSRRPRALRRSTRVPAA----GKGGDRRAPVFPTLVPLHHGPPGAS 181
P G P + + + P L VP G G P P P G PG
Sbjct: 383 P---GGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPP-GPTGPKGEPGFTGRPGGP 438
Query: 182 GVGSERDRKFQLH---QTPARGPP-FPGISGMTR--GPVVLSGVNRQHRWPPGASPSRSL 235
GV +K L Q RGP PG+ G GP L G+ + P R+
Sbjct: 439 GVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRA- 497
Query: 236 GEAGGERPARALRRPRAPGRAGGGGPPG----GGIPACSIGPGLARL 278
GE G P P +PG G GPPG G P G+A L
Sbjct: 498 GEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGL 544
Score = 43.9 bits (102), Expect = 2e-04
Identities = 58/210 (27%), Positives = 74/210 (35%), Gaps = 36/210 (17%)
Query: 97 GPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGE-----------EPSLLRPQLSRRPR 145
GPP + G+ + P L+ P G +P + +P L +P
Sbjct: 53 GPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPG 112
Query: 146 ALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPP-FP 204
PA G R P +P GPPG G+ E + GPP P
Sbjct: 113 --------PAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLP 164
Query: 205 GISGMT----------RGPVVLSGVNRQHRWPPGASPSRSL-GEAGGERPARALRRPRAP 253
G SG+T GP G + PG R L G+ G +P P AP
Sbjct: 165 GPSGITIPGKPGAQGVPGPPGFQG-EPGPQGEPGPPGDRGLKGDNGVGQPGL----PGAP 219
Query: 254 GRAGGGGPPGGGIPACSIGPGLARLAALGG 283
G+ G GPPG PA PGL L G
Sbjct: 220 GQGGAPGPPGLPGPAGLGKPGLDGLPGAPG 249
Score = 40.0 bits (92), Expect = 0.003
Identities = 61/212 (28%), Positives = 76/212 (35%), Gaps = 34/212 (16%)
Query: 64 PDLLLASRGITGCVNALGHRGSPEAVRGPGR-GRGPPNKAGRA--AGSP--TRVQRRPRP 118
P L + +G G G RG P PG+ G G P G+ AG P +R+ + P
Sbjct: 69 PLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPP 128
Query: 119 LRPSRAAPR----LRGEEPSLLRPQLSRRPRA---LRRSTRVPAAGKGGDRRAPVFPTLV 171
P + P LRGE P + Q R P L + + GK G + P P
Sbjct: 129 GLPGKVGPPGQPGLRGE-PGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQ 187
Query: 172 PLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASP 231
GP G G +R K P PG G P PPG
Sbjct: 188 G-EPGPQGEPGPPGDRGLK---GDNGVGQPGLPGAPGQGGAP-----------GPPGLPG 232
Query: 232 SRSLGEAGGERPARALRRPRAPGRAGGGGPPG 263
LG+ G + P APG G GPPG
Sbjct: 233 PAGLGKPGLDG------LPGAPGDKGESGPPG 258
Score = 39.3 bits (90), Expect = 0.004
Identities = 59/214 (27%), Positives = 79/214 (36%), Gaps = 24/214 (11%)
Query: 81 GHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGE-----EPSL 135
G RG P +RG RGPP G S + +P + P +GE EP
Sbjct: 141 GLRGEP-GIRGDQGLRGPPGPPGLPGPSGITIPGKPGA-QGVPGPPGFQGEPGPQGEPGP 198
Query: 136 LRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQ 195
+ + + + A G+GG P P P G PG G+ K +
Sbjct: 199 PGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPG--PAGLGKPGLDGLPGAPGDKGESGP 256
Query: 196 TPARGPPF-PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPG 254
GP PG G +GP + GV PGA+ G G + P+ A P G
Sbjct: 257 PGVPGPRGEPGAVG-PKGPPGVDGVG-----VPGAA-----GLPGPQGPSGAKGEPGTRG 305
Query: 255 RAGGGGPPGGGIPACSIGPGLARLAALGGLPSIL 288
G GP G G+P PG G+P +L
Sbjct: 306 PPGLIGPTGYGMPGL---PGPKGDRGPAGVPGLL 336
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 47.4 bits (111), Expect = 2e-05
Identities = 64/220 (29%), Positives = 78/220 (35%), Gaps = 42/220 (19%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGE 131
G G G G+P V GP +G P R P Q P P PS +L
Sbjct: 829 GKPGDTGPQGFPGTPGDV-GPKGDKGDPGVGERGPPGP---QGPPGPPGPSFRHDKLTFI 884
Query: 132 EPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKF 191
+ + +G GGD A P P GPPG G+ E R F
Sbjct: 885 D--------------------MEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGR-F 923
Query: 192 QLHQTPARGPP-FPGISGMTRGPVVLSGVNRQ-----HRWPPGASPSR-SLGEAGGER-- 242
++ + GP PG+ G GP G+ PPG + + SLGEAG
Sbjct: 924 GVNSSDVPGPAGLPGVPGR-EGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHK 982
Query: 243 -------PARALRRPRAPGRAGGGGPPGGGIPACSIGPGL 275
PA A G G GPPG P GPGL
Sbjct: 983 GSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGL 1022
Score = 35.0 bits (79), Expect = 0.082
Identities = 65/250 (26%), Positives = 81/250 (32%), Gaps = 50/250 (20%)
Query: 68 LASRGITGCVNALGHRGSPEAVRGPGRG---------------RGPPNKAGRAAGSPTRV 112
L S+G G G +G P ++ P G RGPP GR G +
Sbjct: 1162 LGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGR-PGYKGEI 1220
Query: 113 QRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVP 172
RP RP L+GE+ L R + P G G PV+ + V
Sbjct: 1221 GFPGRPGRPGMNG--LKGEKGEPGDASLGFGMRGMPGPPGPP--GPPGPPGTPVYDSNVF 1276
Query: 173 LHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASP 231
PG G+ +GPP P G G P PPG P
Sbjct: 1277 AESSRPGPPGLPGN------------QGPPGPKGAKGEVGPP-----------GPPGQFP 1313
Query: 232 SRSL---GEAGGERPARALRRPRAP-GRAGGGGPPGGGIPACSIGPGLARLAALGGLPSI 287
L E GE+ R + G GGGG G +P PG + G
Sbjct: 1314 FDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKG- 1372
Query: 288 LESSRLLPSP 297
ES R P P
Sbjct: 1373 -ESIRGQPGP 1381
Score = 33.1 bits (74), Expect = 0.31
Identities = 42/140 (30%), Positives = 55/140 (39%), Gaps = 18/140 (12%)
Query: 156 AGKGGDRRAP----VFPTLVPLHHGPPGASGV-GSERDRKFQLHQTPARGPPFPGISGMT 210
AG+ G+R P F + +P GPPG G G + + P GPP P
Sbjct: 1333 AGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQP--GPPGP------ 1384
Query: 211 RGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPAR-ALRRPRAPGRAGGGGPPGGGIPAC 269
+GP + RQ PPG P G P R + P PG G GPPG +
Sbjct: 1385 QGPPGIGYEGRQG--PPG--PPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGASS 1440
Query: 270 SIGPGLARLAALGGLPSILE 289
+ R A LG + + E
Sbjct: 1441 GVRLWATRQAMLGQVHEVPE 1460
Score = 28.5 bits (62), Expect = 7.7
Identities = 42/142 (29%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 126 PRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGS 185
P L G E + PQ + R R P G P P GPPG S
Sbjct: 1080 PGLPGRE-GIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPP-------GPPGPVVYVS 1131
Query: 186 ERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG----E 241
E+D P P F G G GP G ++ R PG P GE G +
Sbjct: 1132 EQDGSVLSVPGPEGRPGFAGFPG-PAGPKGNLG-SKGERGSPG--PKGEKGEPGSIFSPD 1187
Query: 242 RPARALRRPRAPGRAGGGGPPG 263
A + A G G GPPG
Sbjct: 1188 GGALGPAQKGAKGEPGFRGPPG 1209
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 47.4 bits (111), Expect = 2e-05
Identities = 64/220 (29%), Positives = 78/220 (35%), Gaps = 42/220 (19%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGE 131
G G G G+P V GP +G P R P Q P P PS +L
Sbjct: 414 GKPGDTGPQGFPGTPGDV-GPKGDKGDPGVGERGPPGP---QGPPGPPGPSFRHDKLTFI 469
Query: 132 EPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKF 191
+ + +G GGD A P P GPPG G+ E R F
Sbjct: 470 D--------------------MEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGR-F 508
Query: 192 QLHQTPARGPP-FPGISGMTRGPVVLSGVNRQ-----HRWPPGASPSR-SLGEAGGER-- 242
++ + GP PG+ G GP G+ PPG + + SLGEAG
Sbjct: 509 GVNSSDVPGPAGLPGVPGR-EGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHK 567
Query: 243 -------PARALRRPRAPGRAGGGGPPGGGIPACSIGPGL 275
PA A G G GPPG P GPGL
Sbjct: 568 GSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGL 607
Score = 35.0 bits (79), Expect = 0.082
Identities = 65/250 (26%), Positives = 81/250 (32%), Gaps = 50/250 (20%)
Query: 68 LASRGITGCVNALGHRGSPEAVRGPGRG---------------RGPPNKAGRAAGSPTRV 112
L S+G G G +G P ++ P G RGPP GR G +
Sbjct: 747 LGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGR-PGYKGEI 805
Query: 113 QRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVP 172
RP RP L+GE+ L R + P G G PV+ + V
Sbjct: 806 GFPGRPGRPGMNG--LKGEKGEPGDASLGFGMRGMPGPPGPP--GPPGPPGTPVYDSNVF 861
Query: 173 LHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASP 231
PG G+ +GPP P G G P PPG P
Sbjct: 862 AESSRPGPPGLPGN------------QGPPGPKGAKGEVGPP-----------GPPGQFP 898
Query: 232 SRSL---GEAGGERPARALRRPRAP-GRAGGGGPPGGGIPACSIGPGLARLAALGGLPSI 287
L E GE+ R + G GGGG G +P PG + G
Sbjct: 899 FDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKG- 957
Query: 288 LESSRLLPSP 297
ES R P P
Sbjct: 958 -ESIRGQPGP 966
Score = 33.1 bits (74), Expect = 0.31
Identities = 42/140 (30%), Positives = 55/140 (39%), Gaps = 18/140 (12%)
Query: 156 AGKGGDRRAP----VFPTLVPLHHGPPGASGV-GSERDRKFQLHQTPARGPPFPGISGMT 210
AG+ G+R P F + +P GPPG G G + + P GPP P
Sbjct: 918 AGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQP--GPPGP------ 969
Query: 211 RGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPAR-ALRRPRAPGRAGGGGPPGGGIPAC 269
+GP + RQ PPG P G P R + P PG G GPPG +
Sbjct: 970 QGPPGIGYEGRQG--PPG--PPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGASS 1025
Query: 270 SIGPGLARLAALGGLPSILE 289
+ R A LG + + E
Sbjct: 1026 GVRLWATRQAMLGQVHEVPE 1045
Score = 28.5 bits (62), Expect = 7.7
Identities = 42/142 (29%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 126 PRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGS 185
P L G E + PQ + R R P G P P GPPG S
Sbjct: 665 PGLPGRE-GIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPP-------GPPGPVVYVS 716
Query: 186 ERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG----E 241
E+D P P F G G GP G ++ R PG P GE G +
Sbjct: 717 EQDGSVLSVPGPEGRPGFAGFPG-PAGPKGNLG-SKGERGSPG--PKGEKGEPGSIFSPD 772
Query: 242 RPARALRRPRAPGRAGGGGPPG 263
A + A G G GPPG
Sbjct: 773 GGALGPAQKGAKGEPGFRGPPG 794
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 47.4 bits (111), Expect = 2e-05
Identities = 64/220 (29%), Positives = 78/220 (35%), Gaps = 42/220 (19%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGE 131
G G G G+P V GP +G P R P Q P P PS +L
Sbjct: 594 GKPGDTGPQGFPGTPGDV-GPKGDKGDPGVGERGPPGP---QGPPGPPGPSFRHDKLTFI 649
Query: 132 EPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKF 191
+ + +G GGD A P P GPPG G+ E R F
Sbjct: 650 D--------------------MEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGR-F 688
Query: 192 QLHQTPARGPP-FPGISGMTRGPVVLSGVNRQ-----HRWPPGASPSR-SLGEAGGER-- 242
++ + GP PG+ G GP G+ PPG + + SLGEAG
Sbjct: 689 GVNSSDVPGPAGLPGVPGR-EGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHK 747
Query: 243 -------PARALRRPRAPGRAGGGGPPGGGIPACSIGPGL 275
PA A G G GPPG P GPGL
Sbjct: 748 GSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGL 787
Score = 35.0 bits (79), Expect = 0.082
Identities = 65/250 (26%), Positives = 81/250 (32%), Gaps = 50/250 (20%)
Query: 68 LASRGITGCVNALGHRGSPEAVRGPGRG---------------RGPPNKAGRAAGSPTRV 112
L S+G G G +G P ++ P G RGPP GR G +
Sbjct: 927 LGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGR-PGYKGEI 985
Query: 113 QRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVP 172
RP RP L+GE+ L R + P G G PV+ + V
Sbjct: 986 GFPGRPGRPGMNG--LKGEKGEPGDASLGFGMRGMPGPPGPP--GPPGPPGTPVYDSNVF 1041
Query: 173 LHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASP 231
PG G+ +GPP P G G P PPG P
Sbjct: 1042 AESSRPGPPGLPGN------------QGPPGPKGAKGEVGPP-----------GPPGQFP 1078
Query: 232 SRSL---GEAGGERPARALRRPRAP-GRAGGGGPPGGGIPACSIGPGLARLAALGGLPSI 287
L E GE+ R + G GGGG G +P PG + G
Sbjct: 1079 FDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKG- 1137
Query: 288 LESSRLLPSP 297
ES R P P
Sbjct: 1138 -ESIRGQPGP 1146
Score = 33.1 bits (74), Expect = 0.31
Identities = 42/140 (30%), Positives = 55/140 (39%), Gaps = 18/140 (12%)
Query: 156 AGKGGDRRAP----VFPTLVPLHHGPPGASGV-GSERDRKFQLHQTPARGPPFPGISGMT 210
AG+ G+R P F + +P GPPG G G + + P GPP P
Sbjct: 1098 AGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQP--GPPGP------ 1149
Query: 211 RGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPAR-ALRRPRAPGRAGGGGPPGGGIPAC 269
+GP + RQ PPG P G P R + P PG G GPPG +
Sbjct: 1150 QGPPGIGYEGRQG--PPG--PPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMGASS 1205
Query: 270 SIGPGLARLAALGGLPSILE 289
+ R A LG + + E
Sbjct: 1206 GVRLWATRQAMLGQVHEVPE 1225
Score = 28.5 bits (62), Expect = 7.7
Identities = 42/142 (29%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 126 PRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGS 185
P L G E + PQ + R R P G P P GPPG S
Sbjct: 845 PGLPGRE-GIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPP-------GPPGPVVYVS 896
Query: 186 ERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGG----E 241
E+D P P F G G GP G ++ R PG P GE G +
Sbjct: 897 EQDGSVLSVPGPEGRPGFAGFPG-PAGPKGNLG-SKGERGSPG--PKGEKGEPGSIFSPD 952
Query: 242 RPARALRRPRAPGRAGGGGPPG 263
A + A G G GPPG
Sbjct: 953 GGALGPAQKGAKGEPGFRGPPG 974
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 47.4 bits (111), Expect = 2e-05
Identities = 53/193 (27%), Positives = 69/193 (35%), Gaps = 36/193 (18%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGE 131
G TG G RG P +RGP +GPP GRA T +R P P P
Sbjct: 205 GPTGPKGDAGSRG-PMGMRGPPGPQGPPGSPGRAGAVGTPGERGP----PGPPGPPGPPG 259
Query: 132 EPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKF 191
P+ + P +R + HG P S +E + +
Sbjct: 260 PPAPVGPPHARISQ-----------------------------HGDPLLSNTFTETNNHW 290
Query: 192 QLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALR-RP 250
T GPP P GP + G + H PPG + + + GE+ R LR P
Sbjct: 291 PQGPTGPPGPPGPMGPPGPPGPTGVPG-SPGHIGPPGPTGPKGISGHPGEKGERGLRGEP 349
Query: 251 RAPGRAGGGGPPG 263
G AG G PG
Sbjct: 350 GPQGSAGQRGEPG 362
Score = 41.6 bits (96), Expect = 9e-04
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 176 GPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPG-ASPSRS 234
GPP A G + + Q+ GP P +RGP+ + G PPG P S
Sbjct: 181 GPPPAQGSPGDGGLQDQVGAWGLPGPTGPKGDAGSRGPMGMRG-------PPGPQGPPGS 233
Query: 235 LGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALG 282
G AG A+ P G G GPPG P +GP AR++ G
Sbjct: 234 PGRAG------AVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHG 275
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 47.0 bits (110), Expect = 2e-05
Identities = 64/229 (27%), Positives = 77/229 (33%), Gaps = 46/229 (20%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGR-----AAGSPTRVQRRPRPLRPSRAAP 126
G+ G G RG PE +G GPP G A G+ + P + P
Sbjct: 384 GMKGEAGPTGARG-PEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGP 442
Query: 127 RLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVF-----PTLVPLHHGPPGAS 181
P PQ S P+ +R G+ GD P F P P HG G
Sbjct: 443 PGSAGPPGSPGPQGSTGPQGIR--------GQPGDPGVPGFKGEAGPKGEPGPHGIQGPI 494
Query: 182 GVGSERDRKFQLHQTPARGPP-------------FPGISGMT--------RGPVVLSGVN 220
G E ++ GPP FPG G+ RGPV SG
Sbjct: 495 GPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPK 554
Query: 221 RQHRWP-----PGASPSRSL-GEAGGERPARALRRPRAPGRAGGGGPPG 263
P PG +R L G G + P L APG G GPPG
Sbjct: 555 GSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPG 603
Score = 46.6 bits (109), Expect = 3e-05
Identities = 67/206 (32%), Positives = 77/206 (37%), Gaps = 40/206 (19%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGE 131
G G GHRG + + GP G P G A PT PL P R P RG
Sbjct: 291 GAPGLPGLKGHRGH-KGLEGPKGEVGAPGSKGEAG--PTGPMGAMGPLGP-RGMPGERGR 346
Query: 132 EPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFP-TLVPLHHGPPGASGVGSERDRK 190
L PQ A G+ G P P + PL G PG+SG K
Sbjct: 347 ----LGPQ--------------GAPGQRGAHGMPGKPGPMGPL--GIPGSSGFPGNPGMK 386
Query: 191 FQLHQTPARGPPFP-GISGMTR--GPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARAL 247
+ T ARGP P G G T GPV G+ PGA + G G + P +
Sbjct: 387 GEAGPTGARGPEGPQGQRGETGPPGPVGSPGL-------PGAIGTD--GTPGAKGPTGS- 436
Query: 248 RRPRAPGRAGGGGPPGGGIPACSIGP 273
P G G GPPG P S GP
Sbjct: 437 --PGTSGPPGSAGPPGSPGPQGSTGP 460
Score = 45.1 bits (105), Expect = 8e-05
Identities = 65/216 (30%), Positives = 75/216 (34%), Gaps = 40/216 (18%)
Query: 71 RGITGCVNALGHRGS-----PEAVRGPGRGRGPPNKAGRAA-GSPTRVQRRPRP---LRP 121
RGI G G RG E G RG P G PT + P P + P
Sbjct: 767 RGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGP 826
Query: 122 --SRAAPRLRGEEP-----SLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLV--P 172
SR P RGE PQ ++ P G+ GD +P L P
Sbjct: 827 PGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEP--GQKGDAGSPGPQGLAGSP 884
Query: 173 LHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA-SP 231
HGP G G+ R Q P FPG +G P P GA P
Sbjct: 885 GPHGPNGVPGLKGGRGT-----QGPPGATGFPGSAGRVGPP-----------GPAGAPGP 928
Query: 232 SRSLGEAGGERPARALRRPRAPGRAGG---GGPPGG 264
+ LGE G E P P + GR G GPPGG
Sbjct: 929 AGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGG 964
Score = 40.8 bits (94), Expect = 0.001
Identities = 59/204 (28%), Positives = 69/204 (33%), Gaps = 48/204 (23%)
Query: 72 GITGCVNALGHRGSPEAVRGPGR-GR-GPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLR 129
G+ G G +G P A PG GR GPP AG A P P P P LR
Sbjct: 891 GVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAG--APGPAGPLGEPGKEGP----PGLR 944
Query: 130 GEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDR 189
G+ S G+ GDR P P P G PG G
Sbjct: 945 GDPGS---------------------HGRVGDR-GPAGPPGGPGDKGDPGEDG------- 975
Query: 190 KFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRR 249
Q GPP P + RG V + G + P P+ + G+ G P A
Sbjct: 976 -----QPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVG---PTGATGD 1027
Query: 250 PRAPGRAGGGGPPGGGIPACSIGP 273
PG GPPG P GP
Sbjct: 1028 KGPPGPV---GPPGSNGPVGEPGP 1048
Score = 40.4 bits (93), Expect = 0.002
Identities = 61/227 (26%), Positives = 78/227 (34%), Gaps = 28/227 (12%)
Query: 72 GITGCVNALGHRGSPEAVR--GPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLR 129
G G ++G RG P ++ GP G P K G A + QR P + P
Sbjct: 597 GRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGA-PGKDGEVGPSGP 655
Query: 130 GEEPSLLRPQLSRRPRALRRSTRVPA-------AGKGGDRRAPVFPTLV----------- 171
P L + + P +P GK GD+ P P V
Sbjct: 656 VGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGN 715
Query: 172 PLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--NRQHRWPPGA 229
P G PG +G+ E+ +G P P + GP L G+ R PG
Sbjct: 716 PGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGP 775
Query: 230 SPSRS-LGEAGGERPARALRRPRAPGRAGGGGPPGGGIPACSIG-PG 274
R +GE G E A A G G GPPG P G PG
Sbjct: 776 KGDRGGIGEKGAEGTAG---NDGARGLPGPLGPPGPAGPTGEKGEPG 819
Score = 39.3 bits (90), Expect = 0.004
Identities = 65/227 (28%), Positives = 75/227 (33%), Gaps = 37/227 (16%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGE 131
G G V G RG P PG +G P G G+P +R P P R
Sbjct: 1059 GRDGAVGERGDRGDPGPAGLPG-SQGAPGTPG-PVGAPGDAGQRGDPGSRGPIGPPGRAG 1116
Query: 132 EPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKF 191
+ L PQ R + G GDR L G PG G E+
Sbjct: 1117 KRGLPGPQGPRGDKGDH--------GDRGDRGQKGHRGFTGLQ-GLPGPPGPNGEQGSAG 1167
Query: 192 QLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRP 250
RGPP P G SG P L + PPG S +GEAG E
Sbjct: 1168 IPGPFGPRGPPGPVGPSGKEGNPGPLGPIG-----PPGVRGS--VGEAGPE--------- 1211
Query: 251 RAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLPSP 297
GPPG P GP AALG + + S P P
Sbjct: 1212 ---------GPPGEPGPPGPPGPPGHLTAALGDIMGHYDESMPDPLP 1249
Score = 37.7 bits (86), Expect = 0.013
Identities = 63/234 (26%), Positives = 77/234 (32%), Gaps = 27/234 (11%)
Query: 62 QAPDLLLASRGITGCVNALGHRGSPEAV-----RGPGRGRGPPNKAGRAA-----GSPTR 111
+ P L +G G G G P + RGP GPP K G G+P
Sbjct: 221 RGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGP---EGPPGKPGEDGEPGRNGNPGE 277
Query: 112 VQRRPRP-LRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRA--PVFP 168
V P R AP L G + L + AG G A P+ P
Sbjct: 278 VGFAGSPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP 337
Query: 169 TLVPLHHGPPGASGVGSERDRKFQLHQTPARGP-PFPGISGMTRGPVVLSGVNRQHRWPP 227
+P G G G +R + GP PG SG P + + P
Sbjct: 338 RGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGM-----KGEAGPT 392
Query: 228 GA-SPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGG----GIPACSIGPGLA 276
GA P G+ G P + P PG G G PG G P S PG A
Sbjct: 393 GARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSA 446
Score = 37.7 bits (86), Expect = 0.013
Identities = 61/212 (28%), Positives = 74/212 (34%), Gaps = 26/212 (12%)
Query: 64 PDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSR 123
P L RG G G +G P PG G G P G G P V P R R
Sbjct: 658 PPGLAGERGEQGPPGPTGFQGLPGPPGPPGEG-GKPGDQG-VPGDPGAV--GPLGPRGER 713
Query: 124 AAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGD-RRAPVFPTLVPLHHGPPGASG 182
P RGE P ++ P + A G G D + P+ P GPPG G
Sbjct: 714 GNPGERGE------PGITGLP-----GEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQG 762
Query: 183 VGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAG--G 240
+ ER + TP GI +G +G + P P G G G
Sbjct: 763 MPGERG----IAGTPGPKGDRGGIG--EKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKG 816
Query: 241 ERPARALRRPRAPGRAGGGGPPGGGIPACSIG 272
E R L P PG G G G P ++G
Sbjct: 817 EPGPRGLVGP--PGSRGNPGSRGENGPTGAVG 846
Score = 35.0 bits (79), Expect = 0.082
Identities = 61/218 (27%), Positives = 71/218 (32%), Gaps = 43/218 (19%)
Query: 81 GHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQL 140
G +G P V RG P AG R +R P+ RP P+ EP
Sbjct: 113 GQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGERGPKG-RPGPRGPQGIDGEP------- 164
Query: 141 SRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSER----DRKFQLHQT 196
G G AP P P H GP G S S + D K L
Sbjct: 165 ----------------GVPGQPGAP-GPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQ 207
Query: 197 PARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARAL--RRPRA-P 253
P G G RGP L G GA P+ GE G P + R P P
Sbjct: 208 VGLMPGSVGPVG-PRGPQGLQGQQ------GGAGPTGPPGEPGDPGPMGPIGSRGPEGPP 260
Query: 254 GRAGGGGPPGGGIPACSIG----PGLARLAALGGLPSI 287
G+ G G PG +G PG GLP +
Sbjct: 261 GKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGL 298
Score = 34.7 bits (78), Expect = 0.11
Identities = 63/220 (28%), Positives = 78/220 (35%), Gaps = 37/220 (16%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRP-SRAAPRLRG 130
G+ G G G+P +G G G G A R P PL P A P
Sbjct: 759 GLQGMPGERGIAGTP-GPKGDRGGIGEKGAEGTAGNDGAR--GLPGPLGPPGPAGPTGEK 815
Query: 131 EEPS---LLRPQLSR-RPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSE 186
EP L+ P SR P + + A G G + GP G GV E
Sbjct: 816 GEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQ-------------GPDGQPGVKGE 862
Query: 187 RDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA 246
Q + GP G++G + GP +GV PG R G + P A
Sbjct: 863 PGEPGQKGDAGSPGPQ--GLAG-SPGPHGPNGV-------PGLKGGR-----GTQGPPGA 907
Query: 247 LRRPRAPGRAGGGGPPGGGIPACSIG-PGLARLAALGGLP 285
P + GR G GP G PA +G PG L G P
Sbjct: 908 TGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDP 947
Score = 30.0 bits (66), Expect = 2.6
Identities = 29/96 (30%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 172 PLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASP 231
P+ PG R RK Q + P P GI G GP PPG+
Sbjct: 94 PVCSQTPGGGNTNFGRGRKGQKGE-PGLVPVVTGIRGRP-GPA----------GPPGSQG 141
Query: 232 SRS----LGEAGGERPARALRRPRAPGRAGGGGPPG 263
R G G P P PG+ G GPPG
Sbjct: 142 PRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPG 177
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 46.2 bits (108), Expect = 4e-05
Identities = 79/277 (28%), Positives = 98/277 (35%), Gaps = 42/277 (15%)
Query: 4 KPRSPA--PGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQS 61
+PR A PG + PA RT + + GQAQA +P A RQ+
Sbjct: 19 QPRQVASSPGHPSQPPLEDNTPAT---RTTKGAREAGGQAQAME-------LPEAQPRQA 68
Query: 62 QAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRP 121
+ +L S + G RGSP+ G + P AGRA GSP QR +
Sbjct: 69 RDGELKPPSLRGQAPSSTPGKRGSPQTPPGRSPLQAPSRLAGRAEGSPP--QRYILGIAS 126
Query: 122 SRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGAS 181
SR P L E P PQL + + P G AP+ P L P P A
Sbjct: 127 SRTKPTL-DETPE--NPQLEAAQLPEVDTPQGPGTG------APLRPGL-PRTEAQPAAE 176
Query: 182 GVGSER--------------DRKFQLHQTPARGPP-FPGISGMTRGPVVLSGVNRQHRWP 226
+G R + PA GPP G S + G + WP
Sbjct: 177 ELGFHRCFQEPPSSFTSTNYTSPSATPRPPAPGPPQSRGTSPLQPGSYPEYQASGADSWP 236
Query: 227 PGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG 263
P A S G G PA P G GG P G
Sbjct: 237 PAAENSFP-GANFGVPPAEP--EPIPKGSRPGGSPRG 270
Score = 43.9 bits (102), Expect = 2e-04
Identities = 62/251 (24%), Positives = 85/251 (33%), Gaps = 44/251 (17%)
Query: 4 KPRSPAPGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQA 63
+P PG G + GEKR L + PR+ + PR A RQ
Sbjct: 1075 QPPPRGPGFRGRRGRGEKRKEVELTQGPREDEPQK---------------PRKAARQEAG 1119
Query: 64 PDLLLASRGITGCVNALGHRGSPEAVRGPGRG--------RGPPNKAGRAAGSPTRVQRR 115
D A+ G + G SP+A RGP R G P A R + +P
Sbjct: 1120 GDGAPANPEEPG-GSRPGPGRSPQA-RGPSRSLETGAAAREGGPKCADRPSVAP------ 1171
Query: 116 PRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRST----------RVPAAGKGGDRRAP 165
PL+ PSL PQ ++ P S R P A G+ A
Sbjct: 1172 KDPLQVPTNTETSEETRPSLDFPQEAKEPETAEESAPDSTEFTEALRSPPAACAGEMGAS 1231
Query: 166 VFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGP-VVLSGVNRQHR 224
P L+ PP G+ + + P P PG+ + GP + V+ +
Sbjct: 1232 --PGLLIPEQPPPSRHDTGTPKPSGSLANTAPHGSSPTPGVGSLLGGPGGTQAPVSHNSK 1289
Query: 225 WPPGASPSRSL 235
PP P L
Sbjct: 1290 DPPARQPGEFL 1300
Score = 29.6 bits (65), Expect = 3.4
Identities = 50/219 (22%), Positives = 76/219 (34%), Gaps = 33/219 (15%)
Query: 7 SPAPGLGG--SKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQAP 64
SP PG+G G + P + P A G+ A A + + P+ ++ S+
Sbjct: 1265 SPTPGVGSLLGGPGGTQAPVSHNSKDPP--ARQPGEFLAPVANPSSTACPKPSVLSSKIS 1322
Query: 65 DLLLASRGITGCVNALGHR---GSPEAVRGPGRGRGPPNK---AGRAAGSPTRVQRRPRP 118
GC A +R G P A +GP P ++ + + P+P
Sbjct: 1323 SF--------GCDPAGFNRDPLGVPVAKKGPQPYSSPHSELFLGPKDLAGCFLEELHPKP 1374
Query: 119 LRPSRAAPRLR-------GEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLV 171
+R AP GE+ L PQL R P + AA + +FP L
Sbjct: 1375 --SARDAPPASSSCLCQDGEDAGSLEPQLPRSPPGTAETEPGRAASPPTLESSSLFPDLP 1432
Query: 172 PLHHGPPGASGVGSERDRKFQL------HQTPARGPPFP 204
PP + + RD +T PP+P
Sbjct: 1433 VDRFDPPLYGSLSANRDSGLPFACADPPQKTVPSDPPYP 1471
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 46.2 bits (108), Expect = 4e-05
Identities = 68/237 (28%), Positives = 89/237 (37%), Gaps = 38/237 (16%)
Query: 67 LLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAP 126
L+ G+ G + +G G P+ V GP G P + G + G P + + P S P
Sbjct: 1019 LIGPPGLKGTIGDMGFPG-PQGVEGPPGPSGVPGQPG-SPGLPGQKGDKGDPGISSIGLP 1076
Query: 127 RLRGEEPSLLRPQLSRRPRALRRSTRVPAA----GKGGDRRAPVFPTLVPLHHGPPGASG 182
L G + P P ++ S P G G + P P P GPPG G
Sbjct: 1077 GLPGPKGEPGLPGYPGNP-GIKGSVGDPGLPGLPGTPGAKGQPGLPGF-PGTPGPPGPKG 1134
Query: 183 VGSERDRKFQLHQTPARGPPF-PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGE 241
+ GPP PG+ G GPV G H PG P G+ G +
Sbjct: 1135 IS---------------GPPGNPGLPGEP-GPVGGGG----HPGQPG--PPGEKGKPGQD 1172
Query: 242 RPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLPSPR 298
P G+ G G PG G P PGL+ GGLP I + LP P+
Sbjct: 1173 GI------PGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGI-PGNPGLPGPK 1222
Score = 37.0 bits (84), Expect = 0.022
Identities = 64/210 (30%), Positives = 71/210 (33%), Gaps = 35/210 (16%)
Query: 81 GHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQL 140
G RG P GP RGPP G G Q P R P GE P L
Sbjct: 264 GDRGPP----GPPGIRGPPGPPGGEKGEKGE-QGEPG----KRGKPGKDGENGQPGIPGL 314
Query: 141 SRRPRALRRSTRVPAAGKGGDRRAPVFPTLV------PLHHGPPGASGV----GSERDRK 190
P R G+ GD P P LV + G G G+ G + +R
Sbjct: 315 PGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERG 374
Query: 191 FQLHQTPARGPPFPGISGM-TRGPVVLSGVNRQH--RWPPGASPSRSLGEAGGERPARAL 247
F Q P P PG + M GP G Q PPG S G G
Sbjct: 375 FPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDG-------- 426
Query: 248 RRPRAPGRAGGGGPPGGGIP----ACSIGP 273
+P APG G GP G IP C GP
Sbjct: 427 -QPGAPGLPGPPGPAGPHIPPSDEICEPGP 455
Score = 36.2 bits (82), Expect = 0.037
Identities = 72/264 (27%), Positives = 85/264 (32%), Gaps = 68/264 (25%)
Query: 72 GITGCVNALGHRGSPE-AVRGPGRGRGPPNKAGR--AAGSPTRVQRRPRPLRPSRAAPRL 128
G+ G + G G P + GP +G P G A G+P R+ P P P+
Sbjct: 690 GLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK- 748
Query: 129 RGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAP--------------------VFP 168
EP P P A G GDR P V P
Sbjct: 749 --GEPGFALPGPPGPPGLPGFKG---ALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGP 803
Query: 169 TLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWP- 226
P GPPG G+G +GPP P GI G P L G+ + P
Sbjct: 804 NGQPGPMGPPGLPGIG-------------VQGPPGPPGIPGPIGQPG-LHGIPGEKGDPG 849
Query: 227 ------PGASPSR-SLGEAGGERPARALRRPRAPGRAGGGGPPGG--------------- 264
PG R S G G P P PG+AG G PG
Sbjct: 850 PPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGP 909
Query: 265 -GIPACSIGPGLARLAALGGLPSI 287
GIP S PGL L G P +
Sbjct: 910 LGIPGRSGVPGLKGDDGLQGQPGL 933
Score = 35.8 bits (81), Expect = 0.048
Identities = 42/149 (28%), Positives = 54/149 (36%), Gaps = 34/149 (22%)
Query: 157 GKGGDRRAPVFPTL--VPLHHGPPGASGV-GSERDRKFQLHQTPARGPPFPGISGMTRGP 213
G+ G AP P L P G PG G G F+ + P P PG+ G GP
Sbjct: 561 GELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNI-GP 619
Query: 214 VVLSGVNRQHRWPPGASPSRSLGEAGGE----------------RPARALRRPRAPGRAG 257
+ PPG P +GE G + P + + +P PG G
Sbjct: 620 M----------GPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPG 669
Query: 258 GGGPPGG-GIPACSIGPGLARLAALGGLP 285
G G G+P PGL L G+P
Sbjct: 670 NPGRDGDVGLPG---DPGLPGQPGLPGIP 695
Score = 35.8 bits (81), Expect = 0.048
Identities = 56/206 (27%), Positives = 73/206 (35%), Gaps = 23/206 (11%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGR----GPPNKAGRAA--GSPTRVQRRPRPLRPSRAA 125
GI G + G G P PG GPP + G G+P + P P +A
Sbjct: 828 GIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAG 887
Query: 126 ----PRLRGEEPSLLRPQLSRRPRALRRSTRVPAA-GKGGDRRAPVFP--TLVPLHHGPP 178
P +GE ++ P P + + VP G G + P P T G P
Sbjct: 888 ASGFPGTKGEM-GMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEP 946
Query: 179 GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL-GE 237
G G D + P PGI G++ GP G+ PG L G+
Sbjct: 947 GLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVS-GPKGYQGL-------PGDPGQPGLSGQ 998
Query: 238 AGGERPARALRRPRAPGRAGGGGPPG 263
G P P PG+ G GPPG
Sbjct: 999 PGLPGPPGPKGNPGLPGQPGLIGPPG 1024
Score = 35.8 bits (81), Expect = 0.048
Identities = 67/246 (27%), Positives = 88/246 (35%), Gaps = 47/246 (19%)
Query: 72 GITGCVNALGHRGSP-EAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPR--L 128
G G G GSP A+ GP GP GR PT Q P P P +
Sbjct: 1229 GFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPG--PTGFQGLPGPEGPPGLPGNGGI 1286
Query: 129 RGEEPSLLRPQL--------SRRPRALRRSTRVPAA----GKGGDRRAPVFPTLV----- 171
+GE+ + +P L + P L+ + P G G P FP +
Sbjct: 1287 KGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGV 1346
Query: 172 ---------PLHHGPPGASGVGSERDRKFQLHQT--PARGPPFPGISGMT--RGPVVLSG 218
P GPPG G+ + + P P PG+ G+ +GP L G
Sbjct: 1347 PGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPG 1406
Query: 219 VNRQHRWPPGASPSRS----LGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGP 273
PPG P R+ AGG + L P PG G GPPG G+ P
Sbjct: 1407 PTG----PPG-DPGRNGLPGFDGAGGRKGDPGL--PGQPGTRGLDGPPGPDGLQGPPGPP 1459
Query: 274 GLARLA 279
G + +A
Sbjct: 1460 GTSSVA 1465
Score = 35.4 bits (80), Expect = 0.063
Identities = 60/230 (26%), Positives = 79/230 (34%), Gaps = 41/230 (17%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGR--GPPNKAGRAA--GSPTRVQRRPRPLRPS---- 122
+GI+G G G P V G G GPP + G+ G P ++ P +P
Sbjct: 1133 KGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNP 1192
Query: 123 --RAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHH--GPP 178
P L G++ P + P G G + P F + GPP
Sbjct: 1193 GPPGLPGLSGQKGDGGLPGIPGNP------------GLPGPKGEPGFHGFPGVQGPPGPP 1240
Query: 179 GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA 238
G+ G E + Q P P G G+ GP PPG + +
Sbjct: 1241 GSPGPALEGPKGNPGPQGPPGRPGPTGFQGLP-GP----------EGPPGLPGNGGIKGE 1289
Query: 239 GGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGLPSI 287
G L P PG G GPPG G P PGL + GLP +
Sbjct: 1290 KGNPGQPGL--PGLPGLKGDQGPPGLQGNPG---RPGLNGMKGDPGLPGV 1334
Score = 34.3 bits (77), Expect = 0.14
Identities = 64/237 (27%), Positives = 79/237 (33%), Gaps = 69/237 (29%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRG 130
+GI GC G RG P + PG +GPP G P ++G
Sbjct: 119 QGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPG---------------------IPGMKG 156
Query: 131 EEPSLLRPQLSRRPRALRRSTRVPA-AGKGGDR--RAPVFPTLVPLHHGPPGASGVGSER 187
E S++ L P+ P G G P+ P P GPPG G+ +
Sbjct: 157 EPGSIIMSSLP-GPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPK 215
Query: 188 DRKFQLHQTP--------ARGPPFP--------------------GISGMTRGPVVLSGV 219
Q P +GPP P G+ G RGP G+
Sbjct: 216 GNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPG-DRGPPGPPGI 274
Query: 220 NRQHRWPPGASPSRSLGEAG--GERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 274
R PPG P GE G GE R PG+ G G P GIP PG
Sbjct: 275 ----RGPPG-PPGGEKGEKGEQGEPGKRG-----KPGKDGENGQP--GIPGLPGDPG 319
Score = 33.9 bits (76), Expect = 0.18
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 34/146 (23%)
Query: 176 GPPGASGVGSERDRKFQLHQTPARG----------PPFPGISGMTRGPVVLSGV--NRQH 223
GPPG+ G ++ K Q T +G P FPG G + G+ ++
Sbjct: 503 GPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGE 562
Query: 224 RWPPGASPSRSL----------------GEAGG-----ER-PARALRRPRAPGRAGGGGP 261
PGA L GE GG ER P P PG G GP
Sbjct: 563 LGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGP 622
Query: 262 PGGGIPACSIGPGLARLAALGGLPSI 287
PG G P G+ +A G P I
Sbjct: 623 PGFGPPGPVGEKGIQGVAGNPGQPGI 648
Score = 32.3 bits (72), Expect = 0.53
Identities = 86/306 (28%), Positives = 99/306 (32%), Gaps = 97/306 (31%)
Query: 5 PRSP-APGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQA 63
P +P APG GSK GE P L K +G+ + A P L Q
Sbjct: 532 PGAPGAPGFPGSK--GE--PGDILTFPGMK--GDKGELGSPGAPGLPGLPGTPG--QDGL 583
Query: 64 PDLLLASRGITGCVNALGHRGSPEAVRGPGR----------GRGPPNKAGR-----AAGS 108
P L +G G + G RG P PG G GPP G AG+
Sbjct: 584 PGLP-GPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGN 642
Query: 109 PTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFP 168
P + P P + P +P +P L P R G GD P P
Sbjct: 643 PGQ-PGIPGP----KGDPGQTITQPG--KPGLPGNPG------RDGDVGLPGDPGLPGQP 689
Query: 169 TL--VPLHHGPPGASGVGSERDRKFQLHQTPARGPP----FPGISGMTRGPVVLSGVNRQ 222
L +P G PG G+G GPP FPGI G
Sbjct: 690 GLPGIPGSKGEPGIPGIGLP-------------GPPGPKGFPGIPG-------------- 722
Query: 223 HRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAAL 281
PPGA P PGR G GPPG G P PG A
Sbjct: 723 ---PPGA--------------------PGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPP 759
Query: 282 G--GLP 285
G GLP
Sbjct: 760 GPPGLP 765
Score = 32.0 bits (71), Expect = 0.69
Identities = 63/225 (28%), Positives = 72/225 (32%), Gaps = 58/225 (25%)
Query: 67 LLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAP 126
L RG G G G P +G +G P K G+ P
Sbjct: 262 LPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGK---------------------P 300
Query: 127 RLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSE 186
GE P L P R G+ GD P P LV P +G+
Sbjct: 301 GKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVI----PRPGTGITIG 356
Query: 187 RDRKFQLHQTPA----RGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAG--G 240
L P RG FPGI +GP L G PPGA+ G G G
Sbjct: 357 EKGNIGLPGLPGEKGERG--FPGI----QGPPGLPG-------PPGAAVMGPPGPPGFPG 403
Query: 241 ERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 285
ER G+ G GPPG IP PGL GLP
Sbjct: 404 ER-----------GQKGDEGPPGISIPG---PPGLDGQPGAPGLP 434
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 46.2 bits (108), Expect = 4e-05
Identities = 68/237 (28%), Positives = 89/237 (37%), Gaps = 38/237 (16%)
Query: 67 LLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAP 126
L+ G+ G + +G G P+ V GP G P + G + G P + + P S P
Sbjct: 1019 LIGPPGLKGTIGDMGFPG-PQGVEGPPGPSGVPGQPG-SPGLPGQKGDKGDPGISSIGLP 1076
Query: 127 RLRGEEPSLLRPQLSRRPRALRRSTRVPAA----GKGGDRRAPVFPTLVPLHHGPPGASG 182
L G + P P ++ S P G G + P P P GPPG G
Sbjct: 1077 GLPGPKGEPGLPGYPGNP-GIKGSVGDPGLPGLPGTPGAKGQPGLPGF-PGTPGPPGPKG 1134
Query: 183 VGSERDRKFQLHQTPARGPPF-PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGE 241
+ GPP PG+ G GPV G H PG P G+ G +
Sbjct: 1135 IS---------------GPPGNPGLPGEP-GPVGGGG----HPGQPG--PPGEKGKPGQD 1172
Query: 242 RPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLPSPR 298
P G+ G G PG G P PGL+ GGLP I + LP P+
Sbjct: 1173 GI------PGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGI-PGNPGLPGPK 1222
Score = 38.5 bits (88), Expect = 0.007
Identities = 60/219 (27%), Positives = 70/219 (31%), Gaps = 58/219 (26%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGR--GPPNKAGRAA--GSPTRVQRRPRPLRPSRAAP 126
+GI+G G G P V G G GPP + G+ G P ++ P +P P
Sbjct: 1133 KGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNP 1192
Query: 127 RLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSE 186
G P LS G+ GD P P G PG G
Sbjct: 1193 GPPG------LPGLS---------------GQKGDGGLPGIP-------GNPGLPG---- 1220
Query: 187 RDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA 246
P P F G G+ P PPG+ G G P
Sbjct: 1221 ----------PKGEPGFHGFPGVQGPP-----------GPPGSPGPALEGPKGNPGPQGP 1259
Query: 247 LRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAALGGL 284
RP PG G G PG GGI PG L L GL
Sbjct: 1260 PGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGL 1298
Score = 37.0 bits (84), Expect = 0.022
Identities = 64/210 (30%), Positives = 71/210 (33%), Gaps = 35/210 (16%)
Query: 81 GHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQL 140
G RG P GP RGPP G G Q P R P GE P L
Sbjct: 264 GDRGPP----GPPGIRGPPGPPGGEKGEKGE-QGEPG----KRGKPGKDGENGQPGIPGL 314
Query: 141 SRRPRALRRSTRVPAAGKGGDRRAPVFPTLV------PLHHGPPGASGV----GSERDRK 190
P R G+ GD P P LV + G G G+ G + +R
Sbjct: 315 PGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERG 374
Query: 191 FQLHQTPARGPPFPGISGM-TRGPVVLSGVNRQH--RWPPGASPSRSLGEAGGERPARAL 247
F Q P P PG + M GP G Q PPG S G G
Sbjct: 375 FPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDG-------- 426
Query: 248 RRPRAPGRAGGGGPPGGGIP----ACSIGP 273
+P APG G GP G IP C GP
Sbjct: 427 -QPGAPGLPGPPGPAGPHIPPSDEICEPGP 455
Score = 36.2 bits (82), Expect = 0.037
Identities = 72/264 (27%), Positives = 85/264 (32%), Gaps = 68/264 (25%)
Query: 72 GITGCVNALGHRGSPE-AVRGPGRGRGPPNKAGR--AAGSPTRVQRRPRPLRPSRAAPRL 128
G+ G + G G P + GP +G P G A G+P R+ P P P+
Sbjct: 690 GLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK- 748
Query: 129 RGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAP--------------------VFP 168
EP P P A G GDR P V P
Sbjct: 749 --GEPGFALPGPPGPPGLPGFKG---ALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGP 803
Query: 169 TLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWP- 226
P GPPG G+G +GPP P GI G P L G+ + P
Sbjct: 804 NGQPGPMGPPGLPGIG-------------VQGPPGPPGIPGPIGQPG-LHGIPGEKGDPG 849
Query: 227 ------PGASPSR-SLGEAGGERPARALRRPRAPGRAGGGGPPGG--------------- 264
PG R S G G P P PG+AG G PG
Sbjct: 850 PPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGP 909
Query: 265 -GIPACSIGPGLARLAALGGLPSI 287
GIP S PGL L G P +
Sbjct: 910 LGIPGRSGVPGLKGDDGLQGQPGL 933
Score = 35.8 bits (81), Expect = 0.048
Identities = 42/149 (28%), Positives = 54/149 (36%), Gaps = 34/149 (22%)
Query: 157 GKGGDRRAPVFPTL--VPLHHGPPGASGV-GSERDRKFQLHQTPARGPPFPGISGMTRGP 213
G+ G AP P L P G PG G G F+ + P P PG+ G GP
Sbjct: 561 GELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNI-GP 619
Query: 214 VVLSGVNRQHRWPPGASPSRSLGEAGGE----------------RPARALRRPRAPGRAG 257
+ PPG P +GE G + P + + +P PG G
Sbjct: 620 M----------GPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPG 669
Query: 258 GGGPPGG-GIPACSIGPGLARLAALGGLP 285
G G G+P PGL L G+P
Sbjct: 670 NPGRDGDVGLPG---DPGLPGQPGLPGIP 695
Score = 35.8 bits (81), Expect = 0.048
Identities = 56/206 (27%), Positives = 73/206 (35%), Gaps = 23/206 (11%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGR----GPPNKAGRAA--GSPTRVQRRPRPLRPSRAA 125
GI G + G G P PG GPP + G G+P + P P +A
Sbjct: 828 GIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAG 887
Query: 126 ----PRLRGEEPSLLRPQLSRRPRALRRSTRVPAA-GKGGDRRAPVFP--TLVPLHHGPP 178
P +GE ++ P P + + VP G G + P P T G P
Sbjct: 888 ASGFPGTKGEM-GMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEP 946
Query: 179 GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL-GE 237
G G D + P PGI G++ GP G+ PG L G+
Sbjct: 947 GLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVS-GPKGYQGL-------PGDPGQPGLSGQ 998
Query: 238 AGGERPARALRRPRAPGRAGGGGPPG 263
G P P PG+ G GPPG
Sbjct: 999 PGLPGPPGPKGNPGLPGQPGLIGPPG 1024
Score = 34.3 bits (77), Expect = 0.14
Identities = 64/237 (27%), Positives = 79/237 (33%), Gaps = 69/237 (29%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRG 130
+GI GC G RG P + PG +GPP G P ++G
Sbjct: 119 QGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPG---------------------IPGMKG 156
Query: 131 EEPSLLRPQLSRRPRALRRSTRVPA-AGKGGDR--RAPVFPTLVPLHHGPPGASGVGSER 187
E S++ L P+ P G G P+ P P GPPG G+ +
Sbjct: 157 EPGSIIMSSLP-GPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPK 215
Query: 188 DRKFQLHQTP--------ARGPPFP--------------------GISGMTRGPVVLSGV 219
Q P +GPP P G+ G RGP G+
Sbjct: 216 GNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPG-DRGPPGPPGI 274
Query: 220 NRQHRWPPGASPSRSLGEAG--GERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 274
R PPG P GE G GE R PG+ G G P GIP PG
Sbjct: 275 ----RGPPG-PPGGEKGEKGEQGEPGKRG-----KPGKDGENGQP--GIPGLPGDPG 319
Score = 33.9 bits (76), Expect = 0.18
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 34/146 (23%)
Query: 176 GPPGASGVGSERDRKFQLHQTPARG----------PPFPGISGMTRGPVVLSGV--NRQH 223
GPPG+ G ++ K Q T +G P FPG G + G+ ++
Sbjct: 503 GPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGE 562
Query: 224 RWPPGASPSRSL----------------GEAGG-----ER-PARALRRPRAPGRAGGGGP 261
PGA L GE GG ER P P PG G GP
Sbjct: 563 LGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGP 622
Query: 262 PGGGIPACSIGPGLARLAALGGLPSI 287
PG G P G+ +A G P I
Sbjct: 623 PGFGPPGPVGEKGIQGVAGNPGQPGI 648
Score = 33.9 bits (76), Expect = 0.18
Identities = 58/210 (27%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 86 PEAVRG-PGRG-----RGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQ 139
PE G PG G +G P + G + + P L+ + P L G + P
Sbjct: 1268 PEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPG 1327
Query: 140 LSRRPRALRRSTRVP-AAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQT-- 196
+ P ++ + VP +AG G+ P L+ GPPG G+ + +
Sbjct: 1328 VPGFP-GMKGPSGVPGSAGPEGE------PGLI----GPPGPPGLPGPSGQSIIIKGDAG 1376
Query: 197 PARGPPFPGISGMT--RGPVVLSGVNRQHRWPPGASPSRS----LGEAGGERPARALRRP 250
P P PG+ G+ +GP L G PPG P R+ AGG + L P
Sbjct: 1377 PPGIPGQPGLKGLPGPQGPQGLPGPTG----PPG-DPGRNGLPGFDGAGGRKGDPGL--P 1429
Query: 251 RAPGRAGGGGPPG-GGIPACSIGPGLARLA 279
PG G GPPG G+ PG + +A
Sbjct: 1430 GQPGTRGLDGPPGPDGLQGPPGPPGTSSVA 1459
Score = 32.3 bits (72), Expect = 0.53
Identities = 86/306 (28%), Positives = 99/306 (32%), Gaps = 97/306 (31%)
Query: 5 PRSP-APGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQA 63
P +P APG GSK GE P L K +G+ + A P L Q
Sbjct: 532 PGAPGAPGFPGSK--GE--PGDILTFPGMK--GDKGELGSPGAPGLPGLPGTPG--QDGL 583
Query: 64 PDLLLASRGITGCVNALGHRGSPEAVRGPGR----------GRGPPNKAGR-----AAGS 108
P L +G G + G RG P PG G GPP G AG+
Sbjct: 584 PGLP-GPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGN 642
Query: 109 PTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFP 168
P + P P + P +P +P L P R G GD P P
Sbjct: 643 PGQ-PGIPGP----KGDPGQTITQPG--KPGLPGNPG------RDGDVGLPGDPGLPGQP 689
Query: 169 TL--VPLHHGPPGASGVGSERDRKFQLHQTPARGPP----FPGISGMTRGPVVLSGVNRQ 222
L +P G PG G+G GPP FPGI G
Sbjct: 690 GLPGIPGSKGEPGIPGIGLP-------------GPPGPKGFPGIPG-------------- 722
Query: 223 HRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAAL 281
PPGA P PGR G GPPG G P PG A
Sbjct: 723 ---PPGA--------------------PGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPP 759
Query: 282 G--GLP 285
G GLP
Sbjct: 760 GPPGLP 765
Score = 32.0 bits (71), Expect = 0.69
Identities = 63/225 (28%), Positives = 72/225 (32%), Gaps = 58/225 (25%)
Query: 67 LLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAP 126
L RG G G G P +G +G P K G+ P
Sbjct: 262 LPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGK---------------------P 300
Query: 127 RLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSE 186
GE P L P R G+ GD P P LV P +G+
Sbjct: 301 GKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVI----PRPGTGITIG 356
Query: 187 RDRKFQLHQTPA----RGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAG--G 240
L P RG FPGI +GP L G PPGA+ G G G
Sbjct: 357 EKGNIGLPGLPGEKGERG--FPGI----QGPPGLPG-------PPGAAVMGPPGPPGFPG 403
Query: 241 ERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 285
ER G+ G GPPG IP PGL GLP
Sbjct: 404 ER-----------GQKGDEGPPGISIPG---PPGLDGQPGAPGLP 434
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 46.2 bits (108), Expect = 4e-05
Identities = 68/237 (28%), Positives = 89/237 (37%), Gaps = 38/237 (16%)
Query: 67 LLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAP 126
L+ G+ G + +G G P+ V GP G P + G + G P + + P S P
Sbjct: 1019 LIGPPGLKGTIGDMGFPG-PQGVEGPPGPSGVPGQPG-SPGLPGQKGDKGDPGISSIGLP 1076
Query: 127 RLRGEEPSLLRPQLSRRPRALRRSTRVPAA----GKGGDRRAPVFPTLVPLHHGPPGASG 182
L G + P P ++ S P G G + P P P GPPG G
Sbjct: 1077 GLPGPKGEPGLPGYPGNP-GIKGSVGDPGLPGLPGTPGAKGQPGLPGF-PGTPGPPGPKG 1134
Query: 183 VGSERDRKFQLHQTPARGPPF-PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGE 241
+ GPP PG+ G GPV G H PG P G+ G +
Sbjct: 1135 IS---------------GPPGNPGLPGEP-GPVGGGG----HPGQPG--PPGEKGKPGQD 1172
Query: 242 RPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLPSPR 298
P G+ G G PG G P PGL+ GGLP I + LP P+
Sbjct: 1173 GI------PGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGI-PGNPGLPGPK 1222
Score = 37.7 bits (86), Expect = 0.013
Identities = 60/222 (27%), Positives = 70/222 (31%), Gaps = 61/222 (27%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGR--GPPNKAGRAA--GSPTRVQRRPRPLRPSRAAP 126
+GI+G G G P V G G GPP + G+ G P ++ P +P P
Sbjct: 1133 KGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNP 1192
Query: 127 RLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSE 186
G P LS G+ GD P P G PG G
Sbjct: 1193 GPPG------LPGLS---------------GQKGDGGLPGIP-------GNPGLPG---- 1220
Query: 187 RDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA 246
P P F G G+ P PPG+ G G P
Sbjct: 1221 ----------PKGEPGFHGFPGVQGPP-----------GPPGSPGPALEGPKGNPGPQGP 1259
Query: 247 LRRPRAPGRAGGGGPPG----GGIPACSIGPGLARLAALGGL 284
RP G G GPPG GGI PG L L GL
Sbjct: 1260 PGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGL 1301
Score = 37.0 bits (84), Expect = 0.022
Identities = 64/210 (30%), Positives = 71/210 (33%), Gaps = 35/210 (16%)
Query: 81 GHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQL 140
G RG P GP RGPP G G Q P R P GE P L
Sbjct: 264 GDRGPP----GPPGIRGPPGPPGGEKGEKGE-QGEPG----KRGKPGKDGENGQPGIPGL 314
Query: 141 SRRPRALRRSTRVPAAGKGGDRRAPVFPTLV------PLHHGPPGASGV----GSERDRK 190
P R G+ GD P P LV + G G G+ G + +R
Sbjct: 315 PGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERG 374
Query: 191 FQLHQTPARGPPFPGISGM-TRGPVVLSGVNRQH--RWPPGASPSRSLGEAGGERPARAL 247
F Q P P PG + M GP G Q PPG S G G
Sbjct: 375 FPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDG-------- 426
Query: 248 RRPRAPGRAGGGGPPGGGIP----ACSIGP 273
+P APG G GP G IP C GP
Sbjct: 427 -QPGAPGLPGPPGPAGPHIPPSDEICEPGP 455
Score = 36.2 bits (82), Expect = 0.037
Identities = 72/264 (27%), Positives = 85/264 (32%), Gaps = 68/264 (25%)
Query: 72 GITGCVNALGHRGSPE-AVRGPGRGRGPPNKAGR--AAGSPTRVQRRPRPLRPSRAAPRL 128
G+ G + G G P + GP +G P G A G+P R+ P P P+
Sbjct: 690 GLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPK- 748
Query: 129 RGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAP--------------------VFP 168
EP P P A G GDR P V P
Sbjct: 749 --GEPGFALPGPPGPPGLPGFKG---ALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGP 803
Query: 169 TLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWP- 226
P GPPG G+G +GPP P GI G P L G+ + P
Sbjct: 804 NGQPGPMGPPGLPGIG-------------VQGPPGPPGIPGPIGQPG-LHGIPGEKGDPG 849
Query: 227 ------PGASPSR-SLGEAGGERPARALRRPRAPGRAGGGGPPGG--------------- 264
PG R S G G P P PG+AG G PG
Sbjct: 850 PPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGP 909
Query: 265 -GIPACSIGPGLARLAALGGLPSI 287
GIP S PGL L G P +
Sbjct: 910 LGIPGRSGVPGLKGDDGLQGQPGL 933
Score = 35.8 bits (81), Expect = 0.048
Identities = 42/149 (28%), Positives = 54/149 (36%), Gaps = 34/149 (22%)
Query: 157 GKGGDRRAPVFPTL--VPLHHGPPGASGV-GSERDRKFQLHQTPARGPPFPGISGMTRGP 213
G+ G AP P L P G PG G G F+ + P P PG+ G GP
Sbjct: 561 GELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNI-GP 619
Query: 214 VVLSGVNRQHRWPPGASPSRSLGEAGGE----------------RPARALRRPRAPGRAG 257
+ PPG P +GE G + P + + +P PG G
Sbjct: 620 M----------GPPGFGPPGPVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPG 669
Query: 258 GGGPPGG-GIPACSIGPGLARLAALGGLP 285
G G G+P PGL L G+P
Sbjct: 670 NPGRDGDVGLPG---DPGLPGQPGLPGIP 695
Score = 35.8 bits (81), Expect = 0.048
Identities = 56/206 (27%), Positives = 73/206 (35%), Gaps = 23/206 (11%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGR----GPPNKAGRAA--GSPTRVQRRPRPLRPSRAA 125
GI G + G G P PG GPP + G G+P + P P +A
Sbjct: 828 GIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAG 887
Query: 126 ----PRLRGEEPSLLRPQLSRRPRALRRSTRVPAA-GKGGDRRAPVFP--TLVPLHHGPP 178
P +GE ++ P P + + VP G G + P P T G P
Sbjct: 888 ASGFPGTKGEM-GMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEP 946
Query: 179 GASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSL-GE 237
G G D + P PGI G++ GP G+ PG L G+
Sbjct: 947 GLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVS-GPKGYQGL-------PGDPGQPGLSGQ 998
Query: 238 AGGERPARALRRPRAPGRAGGGGPPG 263
G P P PG+ G GPPG
Sbjct: 999 PGLPGPPGPKGNPGLPGQPGLIGPPG 1024
Score = 34.3 bits (77), Expect = 0.14
Identities = 64/237 (27%), Positives = 79/237 (33%), Gaps = 69/237 (29%)
Query: 71 RGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRG 130
+GI GC G RG P + PG +GPP G P ++G
Sbjct: 119 QGIPGCNGTKGERGFPGSPGFPGL-QGPPGPPG---------------------IPGMKG 156
Query: 131 EEPSLLRPQLSRRPRALRRSTRVPA-AGKGGDR--RAPVFPTLVPLHHGPPGASGVGSER 187
E S++ L P+ P G G P+ P P GPPG G+ +
Sbjct: 157 EPGSIIMSSLP-GPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPK 215
Query: 188 DRKFQLHQTP--------ARGPPFP--------------------GISGMTRGPVVLSGV 219
Q P +GPP P G+ G RGP G+
Sbjct: 216 GNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPG-DRGPPGPPGI 274
Query: 220 NRQHRWPPGASPSRSLGEAG--GERPARALRRPRAPGRAGGGGPPGGGIPACSIGPG 274
R PPG P GE G GE R PG+ G G P GIP PG
Sbjct: 275 ----RGPPG-PPGGEKGEKGEQGEPGKRG-----KPGKDGENGQP--GIPGLPGDPG 319
Score = 33.9 bits (76), Expect = 0.18
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 34/146 (23%)
Query: 176 GPPGASGVGSERDRKFQLHQTPARG----------PPFPGISGMTRGPVVLSGV--NRQH 223
GPPG+ G ++ K Q T +G P FPG G + G+ ++
Sbjct: 503 GPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGE 562
Query: 224 RWPPGASPSRSL----------------GEAGG-----ER-PARALRRPRAPGRAGGGGP 261
PGA L GE GG ER P P PG G GP
Sbjct: 563 LGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGP 622
Query: 262 PGGGIPACSIGPGLARLAALGGLPSI 287
PG G P G+ +A G P I
Sbjct: 623 PGFGPPGPVGEKGIQGVAGNPGQPGI 648
Score = 33.9 bits (76), Expect = 0.18
Identities = 58/210 (27%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 86 PEAVRG-PGRG-----RGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQ 139
PE G PG G +G P + G + + P L+ + P L G + P
Sbjct: 1271 PEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPG 1330
Query: 140 LSRRPRALRRSTRVP-AAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQT-- 196
+ P ++ + VP +AG G+ P L+ GPPG G+ + +
Sbjct: 1331 VPGFP-GMKGPSGVPGSAGPEGE------PGLI----GPPGPPGLPGPSGQSIIIKGDAG 1379
Query: 197 PARGPPFPGISGMT--RGPVVLSGVNRQHRWPPGASPSRS----LGEAGGERPARALRRP 250
P P PG+ G+ +GP L G PPG P R+ AGG + L P
Sbjct: 1380 PPGIPGQPGLKGLPGPQGPQGLPGPTG----PPG-DPGRNGLPGFDGAGGRKGDPGL--P 1432
Query: 251 RAPGRAGGGGPPG-GGIPACSIGPGLARLA 279
PG G GPPG G+ PG + +A
Sbjct: 1433 GQPGTRGLDGPPGPDGLQGPPGPPGTSSVA 1462
Score = 32.3 bits (72), Expect = 0.53
Identities = 86/306 (28%), Positives = 99/306 (32%), Gaps = 97/306 (31%)
Query: 5 PRSP-APGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQA 63
P +P APG GSK GE P L K +G+ + A P L Q
Sbjct: 532 PGAPGAPGFPGSK--GE--PGDILTFPGMK--GDKGELGSPGAPGLPGLPGTPG--QDGL 583
Query: 64 PDLLLASRGITGCVNALGHRGSPEAVRGPGR----------GRGPPNKAGR-----AAGS 108
P L +G G + G RG P PG G GPP G AG+
Sbjct: 584 PGLP-GPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGN 642
Query: 109 PTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFP 168
P + P P + P +P +P L P R G GD P P
Sbjct: 643 PGQ-PGIPGP----KGDPGQTITQPG--KPGLPGNPG------RDGDVGLPGDPGLPGQP 689
Query: 169 TL--VPLHHGPPGASGVGSERDRKFQLHQTPARGPP----FPGISGMTRGPVVLSGVNRQ 222
L +P G PG G+G GPP FPGI G
Sbjct: 690 GLPGIPGSKGEPGIPGIGLP-------------GPPGPKGFPGIPG-------------- 722
Query: 223 HRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPG-GGIPACSIGPGLARLAAL 281
PPGA P PGR G GPPG G P PG A
Sbjct: 723 ---PPGA--------------------PGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPP 759
Query: 282 G--GLP 285
G GLP
Sbjct: 760 GPPGLP 765
Score = 32.0 bits (71), Expect = 0.69
Identities = 63/225 (28%), Positives = 72/225 (32%), Gaps = 58/225 (25%)
Query: 67 LLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAP 126
L RG G G G P +G +G P K G+ P
Sbjct: 262 LPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGK---------------------P 300
Query: 127 RLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSE 186
GE P L P R G+ GD P P LV P +G+
Sbjct: 301 GKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVI----PRPGTGITIG 356
Query: 187 RDRKFQLHQTPA----RGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAG--G 240
L P RG FPGI +GP L G PPGA+ G G G
Sbjct: 357 EKGNIGLPGLPGEKGERG--FPGI----QGPPGLPG-------PPGAAVMGPPGPPGFPG 403
Query: 241 ERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLP 285
ER G+ G GPPG IP PGL GLP
Sbjct: 404 ER-----------GQKGDEGPPGISIPG---PPGLDGQPGAPGLP 434
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 45.8 bits (107), Expect = 5e-05
Identities = 71/267 (26%), Positives = 91/267 (34%), Gaps = 56/267 (20%)
Query: 7 SPAPGLGGSK--KTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQAP 64
SPAP G+ + G ++ QT TPR H + + A + P + +Q Q
Sbjct: 2268 SPAPSTSGTSTPRRGRRQLPQT-PSTPRPHVSYSPVIRKAGGSGPPQQQQQQQ-QQQQQQ 2325
Query: 65 DLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRR-PRPLRP-S 122
+ R T G R P P G PP G ++G R++RR P P R S
Sbjct: 2326 AVARPGRAATS-----GPRRYPGPTAEPLAGDRPPT-GGHSSGRSPRMERRVPGPARSES 2379
Query: 123 RAAPRLRGEEPSLLRPQLSRRPRALRR----------STRVPAAGKGGDRRAPVFPTLVP 172
A R G P +S P R P +G G + A + P
Sbjct: 2380 PRACRHGGARWPASGPHVSEGPPGPRHHGYYRGSDYDEADGPGSGGGEEAMAGAYDAPPP 2439
Query: 173 LHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPS 232
+ H GA+G R P P SG P ASPS
Sbjct: 2440 VRHASSGATG----------------RSPRTPRASG-----------------PACASPS 2466
Query: 233 RSLGEA-GGERPARALRRPRAPGRAGG 258
R G PA L RPR PG G
Sbjct: 2467 RHGRRLPNGYYPAHGLARPRGPGSRKG 2493
Score = 31.2 bits (69), Expect = 1.2
Identities = 68/316 (21%), Positives = 105/316 (33%), Gaps = 68/316 (21%)
Query: 2 TAKPRSPAPGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQS 61
T K R+ P + ++ G++R L++ R H +R + +A + P A +++
Sbjct: 835 TNKSRAAEPTV--DQRLGQQRAEDFLRKQARYHDRARDPSGSAGL---DARRPWAGSQEA 889
Query: 62 QAPDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRP 121
+ L+ G G H ++ PG G + G+A R R R
Sbjct: 890 E-----LSREGPYG--RESDHHAREGSLEQPGFWEGEAER-GKAGDPHRRHVHRQGGSRE 941
Query: 122 SRAAPRLRGEEPSLLRPQLSRRP-----------RALRRSTRVPAAGKGGDRRAPVFPTL 170
SR+ G + R + RRP RA R PA G G+ P
Sbjct: 942 SRSGSPRTGADGEHRRHRAHRRPGEEGPEDKAERRARHREGSRPARGGEGEGEGPDGGER 1001
Query: 171 VPLH-HGPPGASGVGSERDRKFQLH----QTPARGPPFPGISGMTRGPV----------- 214
H HG P + R+ K + H + G P G + T P+
Sbjct: 1002 RRRHRHGAPATYEGDARREDKERRHRRRKENQGSGVPVSGPNLSTTRPIQQDLGRQDPPL 1061
Query: 215 ---VLSGVNRQHRWPPGASPSRSLGEAG-------------------------GERPARA 246
+ + N + A+P SLG AG + A +
Sbjct: 1062 AEDIDNMKNNKLATAESAAPHGSLGHAGLPQSPAKMGNSTDPGPMLAIPAMATNPQNAAS 1121
Query: 247 LRRPRAPGRAGGGGPP 262
R P PG GPP
Sbjct: 1122 RRTPNNPGNPSNPGPP 1137
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 45.8 bits (107), Expect = 5e-05
Identities = 68/249 (27%), Positives = 90/249 (36%), Gaps = 53/249 (21%)
Query: 29 RTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQAPDLLLASRGITGCVNALGHRGSPEA 88
RT A RG A L+ ++P+ I+++Q P A G R S
Sbjct: 2 RTETNLAGDRGAEPGVANQLSHRILPQDGIKRAQPPP----------HTPATGTRSSYRL 51
Query: 89 VRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRP--QLSRRPRA 146
+ P +GRG A A S +R++R P + S + PR L P L RRPR
Sbjct: 52 L--PQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLASPAGDLPRRPR- 108
Query: 147 LRRSTRVPAAGKGGDRRAPVFPTLV------PLHHGPPGASGVGSERDRKFQLHQTPARG 200
P AG G P T+ L G G G R + + +R
Sbjct: 109 -------PRAGGGRHSPRPAVGTIFRGGRKGRLREGRGAVRGSGKRRGWGLRPQRVRSR- 160
Query: 201 PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPG----RA 256
G+ G RG GA+ R G G ER + +P P R
Sbjct: 161 --LAGL-GAPRG---------------GAAAPRGWGGQGAER--LGVHQPGLPTHAALRG 200
Query: 257 GGGGPPGGG 265
GGGG GGG
Sbjct: 201 GGGGSEGGG 209
Score = 35.4 bits (80), Expect = 0.063
Identities = 72/233 (30%), Positives = 88/233 (37%), Gaps = 37/233 (15%)
Query: 5 PRSPAPGLGGSKKTGEKRPAQ-TLQRTPRK------HAASRGQAQAAAAALTPSLIPRAA 57
PR P P GG + + RPA T+ R RK A RG + L P + R+
Sbjct: 104 PRRPRPRAGGGRHS--PRPAVGTIFRGGRKGRLREGRGAVRGSGKRRGWGLRPQRV-RSR 160
Query: 58 IRQSQAP-DLLLASRGITGC-VNALG--HRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQ 113
+ AP A RG G LG G P G G G G A SP R +
Sbjct: 161 LAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGARPSPPRAR 220
Query: 114 R------RPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTR-------VPAA---- 156
+ RPR R +A R G QLSR A+R S+R V AA
Sbjct: 221 QPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPT 280
Query: 157 --GKGGDRRAP--VFPTLVPLHHGPPGA-SGVGSERDRKFQLHQTPAR-GPPF 203
G G RRA L G P A G+ R R+ + + P R G PF
Sbjct: 281 RGGARGHRRADGRARGGCAQLRAGTPSAPGGLQDCRGRQGEENAHPFRSGAPF 333
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 45.8 bits (107), Expect = 5e-05
Identities = 65/237 (27%), Positives = 85/237 (35%), Gaps = 30/237 (12%)
Query: 71 RGITGCVNALGHRGSP--EAVRGPGRGRGPPNKAGRAAGSPTRVQRRPR------PLRPS 122
+G G V ++G G+P +GP G P G G P V + P P
Sbjct: 1159 KGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPG-GVGQPGAVGEKGERGDAGDPGPPG 1217
Query: 123 RAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASG 182
AP + G + + S A + G+ G + V PT +P GPPG G
Sbjct: 1218 --APGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDG-AKGSVGPTGLPGDLGPPGDPG 1274
Query: 183 V-GSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA-SPSRSLGEAGG 240
V G + + GP PG SG P PPG PS +G G
Sbjct: 1275 VSGIDGSPGEKGDPGDVGGPGPPGASGEPGAP-----------GPPGKRGPSGHMGREGR 1323
Query: 241 ERPARALRRPRAPGRAGGGGPPGGGIPACSIGPGLARLAALGGLPSILESSRLLPSP 297
E A P G G GP G P +GP L G+P + LL +P
Sbjct: 1324 EGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGP-----EGLRGIPGPVGEPGLLGAP 1375
Score = 44.7 bits (104), Expect = 1e-04
Identities = 84/295 (28%), Positives = 102/295 (34%), Gaps = 63/295 (21%)
Query: 5 PRSPAPGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQAP 64
P P G S KTG+ P +R P RGQ A T P+ + Q AP
Sbjct: 810 PLGPIGEKGKSGKTGQ--PGLEGERGPPGSRGERGQPGA-----TGQPGPKGDVGQDGAP 862
Query: 65 DL--------LLASRGITGCVNALGHRGSPEAVRGPG-RGR-------GPPNKAG----- 103
+ L G G GH+G PG RG GPP AG
Sbjct: 863 GIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQ 922
Query: 104 --RAAGSPTRVQRRPRPLRP--SRAAPRLRGEEPSL--LRPQ--LSRRPRALRRSTRVPA 155
P + P P P + P L G E + L P L + A R P
Sbjct: 923 GKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPK 982
Query: 156 AGKGGDRRAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVV 215
G G PT + GPPG G + L PA G PG SG + GPV
Sbjct: 983 GGPGDPG-----PTGLKGDKGPPGPVGANGSPGERGPLG--PAGGIGLPGQSG-SEGPVG 1034
Query: 216 LSGV--NRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGGGIPA 268
+G +R R PPG + G+ G PG G GPPG P+
Sbjct: 1035 PAGKKGSRGERGPPGPT-----GKDG------------IPGPLGPLGPPGAAGPS 1072
Score = 42.0 bits (97), Expect = 7e-04
Identities = 63/240 (26%), Positives = 80/240 (33%), Gaps = 44/240 (18%)
Query: 70 SRGITGCVNALGHRGSPEAVRGPGRG--RGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPR 127
S G G + +G +G PG RGPP G Q P+ AP
Sbjct: 804 SIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERGQPGATGQPGPKGDVGQDGAPG 863
Query: 128 LRGEE--PSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTL-----VPLHHGPPGA 180
+ GE+ P L P P+ P +G D R P P GPPG
Sbjct: 864 IPGEKGLPGLQGPPGFPGPKG-------PPGHQGKDGR-PGHPGQRGELGFQGQTGPPGP 915
Query: 181 SGVGSERDRKFQLHQTPARGPP----------FPGISGM--------------TRGPVVL 216
+GV + + ++ RGPP PG+ G GP L
Sbjct: 916 AGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGL 975
Query: 217 SGVNRQHRWPPGASPSRSLGEAGGERPARALRRP--RAP-GRAGGGGPPGGGIPACSIGP 273
G P P+ G+ G P A P R P G AGG G PG +GP
Sbjct: 976 RGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGP 1035
Score = 41.2 bits (95), Expect = 0.001
Identities = 63/206 (30%), Positives = 76/206 (36%), Gaps = 47/206 (22%)
Query: 64 PDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSR 123
P +L +G TG V LG RG P GP GPP + G
Sbjct: 915 PAGVLGPQGKTGEVGPLGERGPP----GP---PGPPGEQG-------------------- 947
Query: 124 AAPRLRGEEPSL--LRP--QLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPG 179
P L G E + L P L + A R P G G PT + GPPG
Sbjct: 948 -LPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPG-----PTGLKGDKGPPG 1001
Query: 180 ASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGV--NRQHRWPPGASPSRSLGE 237
G + L PA G PG SG + GPV +G +R R PPG + G+
Sbjct: 1002 PVGANGSPGERGPL--GPAGGIGLPGQSG-SEGPVGPAGKKGSRGERGPPGPT-----GK 1053
Query: 238 AGGERPARALRRPRAPGRAGGGGPPG 263
G P L P A G +G G G
Sbjct: 1054 DGIPGPLGPLGPPGAAGPSGEEGDKG 1079
Score = 40.8 bits (94), Expect = 0.001
Identities = 66/232 (28%), Positives = 77/232 (33%), Gaps = 55/232 (23%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGS----------PTRVQRRPRPLRP 121
G G GH G P A GR RGPP G+ P +Q P P
Sbjct: 1100 GQPGIRGPAGHPGPPGADGAQGR-RGPPGLFGQKGDDGVRGFVGVIGPPGLQGLPGPPGE 1158
Query: 122 S-----------RAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTL 170
AP RG + P + + V G+ GD P
Sbjct: 1159 KGEVGDVGSMGPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDP----- 1213
Query: 171 VPLHHGPPGASGV-GSERD--RKFQLHQTPARGPPF----PGISGM--TRGPVVLSGVNR 221
GPPGA G+ G + D K + A GPP PG G + GP L G
Sbjct: 1214 -----GPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPG--- 1265
Query: 222 QHRWPPG--------ASPSRS--LGEAGGERPARALRRPRAPGRAGGGGPPG 263
PPG SP G+ GG P A P APG G GP G
Sbjct: 1266 -DLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSG 1316
Score = 39.3 bits (90), Expect = 0.004
Identities = 57/207 (27%), Positives = 72/207 (34%), Gaps = 12/207 (5%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGR--AAGSPTRVQRRPRPLRPSRAAPRLR 129
G++G + G +G P V GPG PP +G A G P + R R +
Sbjct: 1274 GVSGIDGSPGEKGDPGDVGGPG----PPGASGEPGAPGPPGKRGPSGHMGREGREGEKGA 1329
Query: 130 GEEPSLLRPQLSRRPRALRRST-RVPAAGKGGDRRAPVFPTLV--PLHHGPPGASGVGSE 186
EP P P R RV G G P L+ P GPPG G
Sbjct: 1330 KGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMGPPGPLGPSGL 1389
Query: 187 RDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARA 246
K +G G+ G+ GP +G P P G+ G P +
Sbjct: 1390 PGLKGDTGPKGEKG--HIGLIGLI-GPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGS 1446
Query: 247 LRRPRAPGRAGGGGPPGGGIPACSIGP 273
L P PG AG G G S+GP
Sbjct: 1447 LGHPGPPGVAGPLGQKGSKGSPGSMGP 1473
Score = 33.5 bits (75), Expect = 0.24
Identities = 51/180 (28%), Positives = 67/180 (37%), Gaps = 33/180 (18%)
Query: 68 LASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPR 127
+ +RG G V G RG P V PG G P + G P PL PS P
Sbjct: 1345 MGARGPPGRVGPEGLRGIPGPVGEPGL-LGAPGQMG-----------PPGPLGPS-GLPG 1391
Query: 128 LRGEEPSLLRPQLSRRPRALRRSTRVPA-AGKGGDR-----RAPVFPTLVP--------- 172
L+G+ P+ + L P AG+ GD+ + P P P
Sbjct: 1392 LKGD----TGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPGPPGPIGSL 1447
Query: 173 LHHGPPGASGVGSERDRKFQLHQTPARGPPFP-GISGMTRGPVVLSGVNRQHRWPPGASP 231
H GPPG +G ++ K RG P G G P L G+ R+ R+ P P
Sbjct: 1448 GHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGAPAELHGLRRRRRFVPVPLP 1507
Score = 31.2 bits (69), Expect = 1.2
Identities = 59/225 (26%), Positives = 76/225 (33%), Gaps = 51/225 (22%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGS----PTRVQRRPRPLRP--SRAA 125
G+TG A G +G+ GP GPP + G P + P P +
Sbjct: 617 GVTGIDGAPGAKGNV----GPPGEPGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGI 672
Query: 126 PRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGS 185
P L G + L P P KG + P P + GP G G
Sbjct: 673 PGLPGSDGPLGHP-----------GHEGPTGEKGA--QGPPGSAGPPGYPGPRGVKGTSG 719
Query: 186 ERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGA----------SPSRSL 235
R + + + G FPG +G V L G + PGA P
Sbjct: 720 NRGLQGEKGEKGEDG--FPGF----KGDVGLKG----DQGKPGAPGPRGEDGPEGPKGQA 769
Query: 236 GEAGGERPARA------LRRPRAPGRAGGGGPPGG-GIPACSIGP 273
G+AG E P + L P PG G GP G G P +GP
Sbjct: 770 GQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPG-PLGP 813
Score = 29.3 bits (64), Expect = 4.5
Identities = 64/212 (30%), Positives = 75/212 (35%), Gaps = 50/212 (23%)
Query: 72 GITGCVNALGHRGSPEAVRGPGRGRGPPNKAGR--AAGSPTRVQRRPRPLRPSRAAPRLR 129
G+ G G RG V PG PP + G A G P + P PR
Sbjct: 554 GLPGLPGEKGQRGDFGHVGQPG----PPGEDGERGAEGPPGPTGQAGEP------GPR-- 601
Query: 130 GEEPSLLRPQLSRRPRALRRSTRVPAA-GKGGDRRAPVFPTLVPLHHGPPGASGV-GSER 187
LL P+ S P T + A G G+ P P GPPG G GS+
Sbjct: 602 ----GLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEP-------GPPGQQGNHGSQG 650
Query: 188 DRKFQ-LHQTPA-RGPPF-PGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPA 244
Q L TP +GPP PGI G+ PG+ LG G E P
Sbjct: 651 LPGPQGLIGTPGEKGPPGNPGIPGL-----------------PGSDGP--LGHPGHEGPT 691
Query: 245 RALRRPRAPGRAGGGGPPG-GGIPACSIGPGL 275
PG AG G PG G+ S GL
Sbjct: 692 GEKGAQGPPGSAGPPGYPGPRGVKGTSGNRGL 723
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 45.4 bits (106), Expect = 6e-05
Identities = 68/249 (27%), Positives = 90/249 (36%), Gaps = 53/249 (21%)
Query: 29 RTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQAPDLLLASRGITGCVNALGHRGSPEA 88
RT A RG A L+ ++P+ I+++Q P A G R S
Sbjct: 2 RTETNLAGDRGAEPGVANQLSHRILPQDGIKRAQPPP----------HTPATGTRSSYRL 51
Query: 89 VRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRP--QLSRRPRA 146
+ P +GRG A A S +R++R P + S + PR L P L RRPR
Sbjct: 52 L--PQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLASPAGDLPRRPR- 108
Query: 147 LRRSTRVPAAGKGGDRRAPVFPTLV------PLHHGPPGASGVGSERDRKFQLHQTPARG 200
P AG G P T+ L G G G R + + +R
Sbjct: 109 -------PRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQRVRSR- 160
Query: 201 PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPG----RA 256
G+ G RG GA+ R G G ER + +P P R
Sbjct: 161 --LAGL-GAPRG---------------GAAAPRGWGGQGAER--LGVHQPGLPTHAALRG 200
Query: 257 GGGGPPGGG 265
GGGG GGG
Sbjct: 201 GGGGSEGGG 209
Score = 35.4 bits (80), Expect = 0.063
Identities = 72/233 (30%), Positives = 88/233 (37%), Gaps = 37/233 (15%)
Query: 5 PRSPAPGLGGSKKTGEKRPAQ-TLQRTPRK------HAASRGQAQAAAAALTPSLIPRAA 57
PR P P GG + + RPA T+ R RK A RG + L P + R+
Sbjct: 104 PRRPRPRAGGGRHS--PRPAVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQRV-RSR 160
Query: 58 IRQSQAP-DLLLASRGITGC-VNALG--HRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQ 113
+ AP A RG G LG G P G G G G A SP R +
Sbjct: 161 LAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGARPSPPRAR 220
Query: 114 R------RPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTR-------VPAA---- 156
+ RPR R +A R G QLSR A+R S+R V AA
Sbjct: 221 QPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPT 280
Query: 157 --GKGGDRRAP--VFPTLVPLHHGPPGA-SGVGSERDRKFQLHQTPAR-GPPF 203
G G RRA L G P A G+ R R+ + + P R G PF
Sbjct: 281 RGGARGHRRADGRARGGCAQLRAGTPSAPGGLQDCRGRQGEENAHPFRSGAPF 333
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 45.4 bits (106), Expect = 6e-05
Identities = 68/249 (27%), Positives = 90/249 (36%), Gaps = 53/249 (21%)
Query: 29 RTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQAPDLLLASRGITGCVNALGHRGSPEA 88
RT A RG A L+ ++P+ I+++Q P A G R S
Sbjct: 2 RTETNLAGDRGAEPGVANQLSHRILPQDGIKRAQPPP----------HTPATGTRSSYRL 51
Query: 89 VRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRP--QLSRRPRA 146
+ P +GRG A A S +R++R P + S + PR L P L RRPR
Sbjct: 52 L--PQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLASPAGDLPRRPR- 108
Query: 147 LRRSTRVPAAGKGGDRRAPVFPTLV------PLHHGPPGASGVGSERDRKFQLHQTPARG 200
P AG G P T+ L G G G R + + +R
Sbjct: 109 -------PRAGGGRHSPRPAVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQRVRSR- 160
Query: 201 PPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPG----RA 256
G+ G RG GA+ R G G ER + +P P R
Sbjct: 161 --LAGL-GAPRG---------------GAAAPRGWGGQGAER--LGVHQPGLPTHAALRG 200
Query: 257 GGGGPPGGG 265
GGGG GGG
Sbjct: 201 GGGGSEGGG 209
Score = 35.4 bits (80), Expect = 0.063
Identities = 72/233 (30%), Positives = 88/233 (37%), Gaps = 37/233 (15%)
Query: 5 PRSPAPGLGGSKKTGEKRPAQ-TLQRTPRK------HAASRGQAQAAAAALTPSLIPRAA 57
PR P P GG + + RPA T+ R RK A RG + L P + R+
Sbjct: 104 PRRPRPRAGGGRHS--PRPAVGTIFRGGRKGRLREGRGALRGSGKRRGWGLRPQRV-RSR 160
Query: 58 IRQSQAP-DLLLASRGITGC-VNALG--HRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQ 113
+ AP A RG G LG G P G G G G A SP R +
Sbjct: 161 LAGLGAPRGGAAAPRGWGGQGAERLGVHQPGLPTHAALRGGGGGSEGGGGGARPSPPRAR 220
Query: 114 R------RPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTR-------VPAA---- 156
+ RPR R +A R G QLSR A+R S+R V AA
Sbjct: 221 QPPSGRPRPRRTRLLGSAERHTGRAALARHGQLSRPHAAVRNSSRGRGAATSVSAAARPT 280
Query: 157 --GKGGDRRAP--VFPTLVPLHHGPPGA-SGVGSERDRKFQLHQTPAR-GPPF 203
G G RRA L G P A G+ R R+ + + P R G PF
Sbjct: 281 RGGARGHRRADGRARGGCAQLRAGTPSAPGGLQDCRGRQGEENAHPFRSGAPF 333
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 45.4 bits (106), Expect = 6e-05
Identities = 77/276 (27%), Positives = 100/276 (36%), Gaps = 30/276 (10%)
Query: 3 AKPRSPAPGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQ 62
A P +P+P S G AQ + P AA+RG AA P L ++ QS
Sbjct: 338 APPAAPSPP--DSPAEGRLVKAQYI---PGAQAATRGLPGRAARRKPPPLTRGRSVEQSP 392
Query: 63 APDLLLASRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAG-------SPTRVQRR 115
+ A+ A G RGSP A R R + + GRA+ PT +
Sbjct: 393 PRERPRAAGRRGRMAEASGRRGSPRA-RKASRSQSETSLLGRASAVPSGPPKYPTAEREE 451
Query: 116 PRPLRPSRA-APRLRGEEPSLLRPQLSR----RPRALRRSTRVPAAGKGGDRRAPVFPTL 170
PRP RP R AP L + R S R R PAA G +P P
Sbjct: 452 PRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRAPAARVPGPGPSPSAPQR 511
Query: 171 VPLHHGPPGASGVGSERDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPP--G 228
L+ G +G SE +L RGP +G G S + P
Sbjct: 512 RLLY----GCAGSDSECSAG-RLGPLGRRGP-----AGGVGGGYGESESSASEGESPAFS 561
Query: 229 ASPSRSLGEAGGERPARALRRPRAPGRAGGGGPPGG 264
++ S S G G P + + A G G G P G
Sbjct: 562 SASSDSDGSGGLVWPQQLVAATAASGGGAGAGAPAG 597
Score = 42.7 bits (99), Expect = 4e-04
Identities = 68/255 (26%), Positives = 91/255 (35%), Gaps = 43/255 (16%)
Query: 23 PAQTLQRTPRKHAASRGQAQAAAAA-LTPSLIPRAAIRQ--------SQAPDLLLASRGI 73
P T + A S + +A A LTPS + A+R + +PD A R +
Sbjct: 190 PYPTAGGSAGPEACSSAERRARAGPFLTPSPLHAVAMRSPRPCGRPPTDSPDAGGAGRPL 249
Query: 74 TGCVNAL----GHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLR 129
G ++AL RG+ + PG G P + P P RP+R
Sbjct: 250 DGYISALLRRRRRRGAGQPRTSPGGADGGPRRQNSVRQRPPDASPSPGSARPAR------ 303
Query: 130 GEEPSLLR-PQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSERD 188
EPSL R P AL R A + A P P PP + G
Sbjct: 304 --EPSLERVGGHPTSPAALSR-----AWASSWESEAAPEPAAPPAAPSPPDSPAEGRLVK 356
Query: 189 RKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPSRSLGEA-GGERPARAL 247
++ PG TRG L G R PP + RS+ ++ ERP A
Sbjct: 357 AQY-----------IPGAQAATRG---LPG-RAARRKPPPLTRGRSVEQSPPRERPRAAG 401
Query: 248 RRPRAPGRAGGGGPP 262
RR R +G G P
Sbjct: 402 RRGRMAEASGRRGSP 416
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 45.1 bits (105), Expect = 8e-05
Identities = 67/272 (24%), Positives = 93/272 (34%), Gaps = 32/272 (11%)
Query: 10 PGLGGSKKTGEKRPAQTLQRTPRKHAASRGQAQAAAAALTPSLIPRAAIRQSQAPDLLLA 69
PG GG ++ G P + L A++ + +A + + +P AA + P+ A
Sbjct: 97 PGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAA-VAAGPEPAPA 155
Query: 70 SRGITGCVNALGHRGSPEAVRGPGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAP--- 126
AL R P GPG G GP G+ + L AA
Sbjct: 156 GPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAV 215
Query: 127 RLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKGGDRRAPVFPTLVPLHHGPPGASGVGSE 186
L P+ L P +P A + P AP P+ PP A +
Sbjct: 216 SLVNNGPAALLPL--PKPAAPGTVIQTPPFVGAAAPPAPAAPS-------PPAAPAPAA- 265
Query: 187 RDRKFQLHQTPARGPPFPGISGMTRGPVVLSGVNRQHRWPPGASPS---RSLGEAGGERP 243
PA PP P P L+ PP A+P+ + + GG
Sbjct: 266 ----------PAAAPPPP-----PPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAG 310
Query: 244 ARALRRPRAPGRAGGGGPPGGGIPACSIGPGL 275
A P A G AG G PG G A + PG+
Sbjct: 311 AAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGV 342
Score = 38.9 bits (89), Expect = 0.006
Identities = 73/262 (27%), Positives = 89/262 (33%), Gaps = 51/262 (19%)
Query: 43 AAAAALTPSLIPRAAIRQSQAPDLLLASRGITGCVNALGHR---GSPEAVRGPGRGRGPP 99
AA+AA L PR P++ A+ G ALG+ GSP G G
Sbjct: 34 AASAAHHHHLAPRT-------PEVRAAAAG------ALGNHVVSGSPAGAAGAGPAAPAE 80
Query: 100 NKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRSTRVPAAGKG 159
G A P + RP P R P PS RP + P R P G
Sbjct: 81 GAPGAAPEPPPAGRARPGGGGPQRPGP------PSPRRPLVPAGPAPPAAKLRPPPEGSA 134
Query: 160 GDRRAPVFPTLVPLHHGPPGASGVGSERDRKFQLHQTPARGP-------PFPGISGMTRG 212
G APV P + GP A ++ L GP P PG G G
Sbjct: 135 GS-CAPV-PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPG-PGKPAG 191
Query: 213 P---VVLSG----VNRQHRWPPGASPSRSLGEAGGERPARALRRPRAPGR-------AGG 258
P L+G +N H A+P+ SL G L +P APG G
Sbjct: 192 PGAAQTLNGSAALLNSHH----AAAPAVSLVN-NGPAALLPLPKPAAPGTVIQTPPFVGA 246
Query: 259 GGPPGGGIPACSIGPGLARLAA 280
PP P+ P A AA
Sbjct: 247 AAPPAPAAPSPPAAPAPAAPAA 268
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,977,576
Number of Sequences: 37866
Number of extensions: 1192231
Number of successful extensions: 11774
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 1002
Number of HSP's that attempted gapping in prelim test: 8035
Number of HSP's gapped (non-prelim): 3354
length of query: 303
length of database: 18,247,518
effective HSP length: 102
effective length of query: 201
effective length of database: 14,385,186
effective search space: 2891422386
effective search space used: 2891422386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.