Guide to the Human Genome
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Name: CACNA1A Sequence: fasta or formatted (2506aa) NCBI GI: 187828892
Description:

calcium channel, alpha 1A subunit isoform 4

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [2261aa] calcium channel, alpha 1A subunit isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6        190           3
 C cysteine            1.1         28           1
 D aspartate           4.7        119           3
 E glutamate           6.4        160           4
 F phenylalanine       5.0        125           3
 G glycine             7.7        193           4
 H histidine           2.7         68          10
 I isoleucine          4.5        114           3
 K lysine              4.4        110           2
 L leucine             8.3        208           3
 M methionine          3.4         85           2
 N asparagine          4.2        105           3
 P proline             6.9        172           4
 Q glutamine           4.3        108          13
 R arginine            8.0        201           4
 S serine              6.5        164           3
 T threonine           4.7        119           2
 V valine              5.1        129           3
 W tryptophan          1.3         32           1
 Y tyrosine            3.0         76           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.891   calcium channel, alpha 1A subunit isoform 3 
CACNA1B               0.537   calcium channel, voltage-dependent, N type, alpha 1B ...
CACNA1E               0.468   calcium channel, voltage-dependent, R type, alpha 1E...
CACNA1D               0.147   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.146   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.145   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.145   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.145   calcium channel, voltage-dependent, L type, alpha 1D ...
CACNA1C               0.145   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.145   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.144   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.144   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.144   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1F               0.144   calcium channel, voltage-dependent, L type, alpha 1F...
CACNA1C               0.143   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.143   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1S               0.138   calcium channel, voltage-dependent, L type, alpha 1...
SCN2A                 0.059   sodium channel, voltage-gated, type II, alpha isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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