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Search of human proteins with 169212850
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169212850 PREDICTED: hypothetical protein [Homo sapiens]
(124 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169213008 PREDICTED: hypothetical protein [Homo sapiens] 253 3e-68
gi|169213173 PREDICTED: hypothetical protein [Homo sapiens] 253 3e-68
gi|169212850 PREDICTED: hypothetical protein [Homo sapiens] 253 3e-68
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 40 6e-04
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 39 8e-04
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 39 0.001
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 39 0.001
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 38 0.002
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 37 0.004
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 37 0.004
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 37 0.004
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 35 0.011
gi|145309320 forkhead box Q1 [Homo sapiens] 35 0.015
gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens] 35 0.019
gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens] 35 0.019
gi|13994287 BTE-binding protein 4 [Homo sapiens] 35 0.019
gi|239755340 PREDICTED: similar to hCG2040250 [Homo sapiens] 35 0.019
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 35 0.019
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 35 0.019
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 34 0.025
gi|95147559 ankyrin repeat domain 43 [Homo sapiens] 34 0.025
gi|188536004 zinc finger protein 469 [Homo sapiens] 34 0.033
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 34 0.033
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 34 0.033
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 33 0.043
gi|21536402 bridging integrator 1 isoform 2 [Homo sapiens] 33 0.043
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 33 0.043
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 33 0.043
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 33 0.043
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 33 0.043
>gi|169213008 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 253 bits (646), Expect = 3e-68
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ 60
MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ
Sbjct: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ 60
Query: 61 ESSGLHRVRLPPAISVIKAGNPVEDAFPWNDPEWTTPELSLPILATSKAIIPLKTMASFG 120
ESSGLHRVRLPPAISVIKAGNPVEDAFPWNDPEWTTPELSLPILATSKAIIPLKTMASFG
Sbjct: 61 ESSGLHRVRLPPAISVIKAGNPVEDAFPWNDPEWTTPELSLPILATSKAIIPLKTMASFG 120
Query: 121 TKRK 124
TKRK
Sbjct: 121 TKRK 124
>gi|169213173 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 253 bits (646), Expect = 3e-68
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ 60
MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ
Sbjct: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ 60
Query: 61 ESSGLHRVRLPPAISVIKAGNPVEDAFPWNDPEWTTPELSLPILATSKAIIPLKTMASFG 120
ESSGLHRVRLPPAISVIKAGNPVEDAFPWNDPEWTTPELSLPILATSKAIIPLKTMASFG
Sbjct: 61 ESSGLHRVRLPPAISVIKAGNPVEDAFPWNDPEWTTPELSLPILATSKAIIPLKTMASFG 120
Query: 121 TKRK 124
TKRK
Sbjct: 121 TKRK 124
>gi|169212850 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 253 bits (646), Expect = 3e-68
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ 60
MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ
Sbjct: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ 60
Query: 61 ESSGLHRVRLPPAISVIKAGNPVEDAFPWNDPEWTTPELSLPILATSKAIIPLKTMASFG 120
ESSGLHRVRLPPAISVIKAGNPVEDAFPWNDPEWTTPELSLPILATSKAIIPLKTMASFG
Sbjct: 61 ESSGLHRVRLPPAISVIKAGNPVEDAFPWNDPEWTTPELSLPILATSKAIIPLKTMASFG 120
Query: 121 TKRK 124
TKRK
Sbjct: 121 TKRK 124
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 39.7 bits (91), Expect = 6e-04
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESSG 64
G G+PG+P AP PG + P G K + GS P + P P I E +G
Sbjct: 765 GLQGIPGIPGAPGPTGPPGLMGRTGHPGPTGAKGEKGSDGPPGKPGPPGPPGIPFNERNG 824
Query: 65 LHRV-RLPPAISVIKAGNPVEDAFPWNDP 92
+ + ++ ++V P P DP
Sbjct: 825 MSSLYKIKGGVNVPSYPGPPGPPGPKGDP 853
Score = 30.8 bits (68), Expect = 0.28
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESSG 64
GD G PG P P G + ++GR+ K+G +P P P I+ G
Sbjct: 379 GDTGPPGPPALPGSLGIQGPQGPPGKEGQRGRRGKTGPPGKPGPPGPPGPPGIQ-----G 433
Query: 65 LHR 67
+H+
Sbjct: 434 IHQ 436
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG 41
AG PG PG P PG L P G+K + G
Sbjct: 294 AGLPGAPGSPGQKGHKGEPGENGLHGAPGFPGQKGEQG 331
Score = 26.2 bits (56), Expect = 6.9
Identities = 28/99 (28%), Positives = 31/99 (31%), Gaps = 17/99 (17%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRK---------NKSGSAARPSEEEAP- 52
L GD G GLP P G EP +G K G P + P
Sbjct: 457 LKGDKGETGLPGFPGSVGPKGQKGEPGEPFTKGEKGDRGEPGVIGSQGVKGEPGDPGPPG 516
Query: 53 ---LPAPIRQQESSGLHRVRLPPAISVIKAGNPVEDAFP 88
P QQ S+G R PP G P E P
Sbjct: 517 LIGSPGLKGQQGSAGSMGPRGPPG----DVGLPGEHGIP 551
Score = 26.2 bits (56), Expect = 6.9
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 2 ALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQE 61
+L G+PGL G P AP G +G GS + +P Q
Sbjct: 585 SLPGEPGLDGNPGAPGPRGPKG---------ERGLPGVHGSPGDIGPQGIGIPGRTGAQG 635
Query: 62 SSGLHRVRLPPAISVIKA--GNPVEDAFPWNDPEWTTP-----ELSLPILATSKAII 111
+G ++ P + + G P D P D + P ++LP+L A++
Sbjct: 636 PAGEPGIQGPRGLPGLPGTPGTPGNDGVPGRDGKPGLPGPPGDPIALPLLGDIGALL 692
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 39.3 bits (90), Expect = 8e-04
Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 8 GLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESSGLHR 67
G PG P P RA AP P + EPR+ K + GS AR P P Q + G
Sbjct: 292 GAPGEPAEPGRARAPRSAPSSREPRQ--TKRRVGSRARAGAGAVTGPCPAAAQGARGSW- 348
Query: 68 VRLPPAISVIKAGNPVEDAFPWNDPEWTTPELSLPILA 105
P+ + + +A P + P P S P LA
Sbjct: 349 ----PSPRCLPSDGGAREAPPTSAPHPRRPAGSPPALA 382
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 38.5 bits (88), Expect = 0.001
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASE------PRRQGRKNKSGSAARPSEEEAPLPAPIR 58
G+PGLPGLP P PG + E P +G + ++G R E P P
Sbjct: 326 GEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRGERGEPGAPGPKG 385
Query: 59 QQESSG 64
+Q SG
Sbjct: 386 KQGESG 391
Score = 26.9 bits (58), Expect = 4.0
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG 41
G G PGLP A + PG EP QG K +G
Sbjct: 258 GQKGEPGLPGAVGQNGIPGP---KGEPGEQGEKGDAG 291
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 38.5 bits (88), Expect = 0.001
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASE------PRRQGRKNKSGSAARPSEEEAPLPAPIR 58
G+PGLPGLP P PG + E P +G + ++G R E P P
Sbjct: 326 GEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEAGPPGRGERGEPGAPGPKG 385
Query: 59 QQESSG 64
+Q SG
Sbjct: 386 KQGESG 391
Score = 26.9 bits (58), Expect = 4.0
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG 41
G G PGLP A + PG EP QG K +G
Sbjct: 258 GQKGEPGLPGAVGQNGIPGP---KGEPGEQGEKGDAG 291
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 38.1 bits (87), Expect = 0.002
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAAR---------PSEEEAPL 53
LAG+PG PG+P P RA G E +G K + G R P P
Sbjct: 2032 LAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPG 2091
Query: 54 PAPIRQQESSGLHRVRLPPAISVIKAGNP 82
P + GL + PP + K G P
Sbjct: 2092 PKVSVDEPGPGLSGEQGPPGLKGAK-GEP 2119
Score = 36.6 bits (83), Expect = 0.005
Identities = 20/50 (40%), Positives = 22/50 (44%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
GD GLPGLP AP PG E + G + G A P E P P
Sbjct: 2389 GDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGP 2438
Score = 35.0 bits (79), Expect = 0.015
Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASE---PRRQGRKNKSGSAARPSEEEAP 52
GDPGLPG AP PG E P GR G A P AP
Sbjct: 1272 GDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAP 1322
Score = 30.0 bits (66), Expect = 0.47
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
M L G G PG P P R APG +G + G+ RP
Sbjct: 1262 MGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRP 1307
Score = 29.6 bits (65), Expect = 0.62
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE 49
+G PGLPG P + G +P GRK + G + E
Sbjct: 1823 SGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGRE 1868
Score = 29.6 bits (65), Expect = 0.62
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP-LPAPIRQQESS 63
G PGLPG + APG R G K G P +P LP P+ +
Sbjct: 2242 GSPGLPGQVGETGKPGAPG---------RDGASGKDGDRGSPGVPGSPGLPGPVGPKGEP 2292
Query: 64 G 64
G
Sbjct: 2293 G 2293
Score = 29.3 bits (64), Expect = 0.81
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKS--GSAARPSEEEAP 52
G+PGLPGLP +P G P ++G K S G+ P + +P
Sbjct: 1421 GEPGLPGLPGSPGPQGPVG------PPGKKGEKGDSEDGAPGLPGQPGSP 1464
Score = 29.3 bits (64), Expect = 0.81
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEP------RRQGRKNKSGSAARPSEE----EAP 52
L G G PGLP P PG EP R+G K SG++ R + E
Sbjct: 1819 LPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERG 1878
Query: 53 LPAPIRQQESSGLHRVRLPP 72
P + Q GL PP
Sbjct: 1879 APGILGPQGPPGLPGPVGPP 1898
Score = 28.1 bits (61), Expect = 1.8
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPA--------- 55
G PG G P A PG P GR+ + G RP + PA
Sbjct: 1498 GPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKG 1557
Query: 56 ---PIRQQESSGLHRVRLPPAISVIKAGNP 82
P + ++G+ R PP + + G+P
Sbjct: 1558 DVGPAGPRGATGVQGERGPPGL--VLPGDP 1585
Score = 27.7 bits (60), Expect = 2.4
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 5 GDPGLPG------LPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
GDPGLPG L AP G +P GR GS+ + P P
Sbjct: 1646 GDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGP 1701
Score = 27.7 bits (60), Expect = 2.4
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 4 AGDPGLPGLP------PAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE 49
AGDPG GLP P + PG E + G K+G P E+
Sbjct: 1802 AGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGED 1853
Score = 27.3 bits (59), Expect = 3.1
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSE 48
G G PG P AP +PG +P +G + G P +
Sbjct: 1311 GRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQ 1354
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/54 (31%), Positives = 19/54 (35%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIR 58
G PGLPG P +P G +G G A E P PA R
Sbjct: 1453 GAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSR 1506
Score = 26.6 bits (57), Expect = 5.2
Identities = 18/65 (27%), Positives = 22/65 (33%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ 60
M G G GL P R PG L P G SG + LP P ++
Sbjct: 2415 MGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGER 2474
Query: 61 ESSGL 65
G+
Sbjct: 2475 GEPGI 2479
Score = 25.8 bits (55), Expect = 8.9
Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP-LPAPIRQQE 61
L G GL G P A + G A +P R G G P P LP +
Sbjct: 1777 LDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDG 1836
Query: 62 SSGLHRVRLPPAISVIKAGNPVED 85
GL+ P G+P ED
Sbjct: 1837 KPGLNGKNGEP-------GDPGED 1853
Score = 25.8 bits (55), Expect = 8.9
Identities = 13/31 (41%), Positives = 13/31 (41%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQG 35
GDPG PG P A G L EP G
Sbjct: 2183 GDPGPPGAPGLAGPAGPQGPSGLKGEPGETG 2213
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 37.0 bits (84), Expect = 0.004
Identities = 20/50 (40%), Positives = 20/50 (40%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
GDPGLPGLP P PG P G K SG P P P
Sbjct: 1101 GDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGP 1150
Score = 33.5 bits (75), Expect = 0.043
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 5 GDPGLPGL-----PPAPSRASA-PGHLPLASEPRRQGRKNKSGSAARPSEEEAP----LP 54
G PGLPG PP P S PG+ L EP G G P E+ P +P
Sbjct: 1116 GQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1175
Query: 55 APIRQQESSG 64
P Q+ G
Sbjct: 1176 GPAGQKGEPG 1185
Score = 33.1 bits (74), Expect = 0.056
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PG+PGLP P PG EP R G K + G P +P P
Sbjct: 307 GQPGIPGLPGDPGY---PG------EPGRDGEKGQKGDTGPPGPPGLVIPRP 349
Score = 32.3 bits (72), Expect = 0.096
Identities = 19/55 (34%), Positives = 23/55 (41%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPI 57
L G PG PGLP P APG + +G + GS P + P P I
Sbjct: 97 LPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGI 151
Score = 31.2 bits (69), Expect = 0.21
Identities = 19/61 (31%), Positives = 23/61 (37%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQES 62
L+G PGLPG P PG L P +G G E P P+ + Q
Sbjct: 995 LSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPG 1054
Query: 63 S 63
S
Sbjct: 1055 S 1055
Score = 30.8 bits (68), Expect = 0.28
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPI 57
G+PGLPG P P + G L P G K + G P P P I
Sbjct: 1083 GEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGI 1135
Score = 30.8 bits (68), Expect = 0.28
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
++G PG PGLP P GH +P G K K G P
Sbjct: 1135 ISGPPGNPGLPGEPGPVGGGGH---PGQPGPPGEKGKPGQDGIP 1175
Score = 29.6 bits (65), Expect = 0.62
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 3 LAGDPGLPGLPPAPSRASAPGH 24
+ G PGLPG P P PGH
Sbjct: 91 IRGPPGLPGFPGTPGLPGMPGH 112
Score = 29.6 bits (65), Expect = 0.62
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 5 GDPGLPGL------PPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP----LP 54
G PG PGL P P PG + ++S P G K G P + P +P
Sbjct: 135 GSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLP---GPKGNPGYPGPPGIQGLPGPTGIP 191
Query: 55 APIRQQESSGLHRVRLPPAI 74
PI GL PP +
Sbjct: 192 GPIGPPGPPGLMGPPGPPGL 211
Score = 29.6 bits (65), Expect = 0.62
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
++G PG PGLP P PG L + +G+ +G P AP
Sbjct: 489 ISGPPGQPGLPGLP---GPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAP 535
Score = 29.6 bits (65), Expect = 0.62
Identities = 16/48 (33%), Positives = 17/48 (35%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G PGLPGLP P PG + G K G P P
Sbjct: 494 GQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFP 541
Score = 29.6 bits (65), Expect = 0.62
Identities = 28/98 (28%), Positives = 33/98 (33%), Gaps = 19/98 (19%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP---------- 52
L G PG PG P P PG + + P +G K + GS P P
Sbjct: 528 LPGIPGAPGAPGFPGSKGEPG--DILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPG 585
Query: 53 LPAPIRQQESSGLHRVRLPPAISVIKAGNPVEDAFPWN 90
LP P + R PP GNP P N
Sbjct: 586 LPGPKGEPGGITFKGERGPP-------GNPGLPGLPGN 616
Score = 29.3 bits (64), Expect = 0.81
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 5 GDPGLPGL--PPAPSRASAP-GHLPL-----ASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PG PGL PP P P G++ L E QG + G + SE++ P+
Sbjct: 195 GPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVE 254
Query: 57 IRQQESSGLHRVRLPP 72
Q+ GL R PP
Sbjct: 255 F-QKGDQGLPGDRGPP 269
Score = 29.3 bits (64), Expect = 0.81
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 1 MALAGDPGL---PGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
+ L GDPGL PGLP P PG +P P G K G P P
Sbjct: 677 VGLPGDPGLPGQPGLPGIPGSKGEPG-IPGIGLPGPPGPKGFPGIPGPPGAPGTP 730
Score = 29.3 bits (64), Expect = 0.81
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
G+PG PGLP P G L P R G G P
Sbjct: 1291 GNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLP 1332
Score = 29.3 bits (64), Expect = 0.81
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
+ G PGL GLP PG +P R G G+ R + P
Sbjct: 1386 IPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLP 1435
Score = 28.9 bits (63), Expect = 1.1
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP-LPAPIRQQESS 63
G+PGLPG P G + P QG + G + P + +P LP +
Sbjct: 1009 GNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDP 1068
Query: 64 GLHRVRLP 71
G+ + LP
Sbjct: 1069 GISSIGLP 1076
Score = 28.5 bits (62), Expect = 1.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 1 MALAGDPGLPGLPPAPSRASAPG----HLPLASEPRRQGRKNKSGS 42
+++ G PGL G P AP PG H+P + E G GS
Sbjct: 416 ISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGS 461
Score = 28.5 bits (62), Expect = 1.4
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG-SAARPSEEEAPLPAP 56
M + G PG PG P R+ PG L + QG+ G + + S+ E LP P
Sbjct: 898 MGMMGPPGPPGPLGIPGRSGVPG---LKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP 951
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PGLPG P PG L +P G GS P LP P
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQP---GLPGIPGSKGEPGIPGIGLPGP 711
Score = 28.1 bits (61), Expect = 1.8
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP---------LPA 55
G+PGLPG P PG E + G+ G A + E P LP
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 56 PIRQQESSGLHRVRLPPAISVIKAGNPVEDAFP 88
Q+ GL + P + K G P FP
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPK-GEPGFHGFP 1231
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G+PGLPG+P + G+ L +P + G + G P + P
Sbjct: 967 GEPGLPGIPGV---SGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNP 1011
Score = 27.3 bits (59), Expect = 3.1
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPA 55
+ GDPGLPG+P P G P G + + G P P P+
Sbjct: 1325 MKGDPGLPGVPGFPGMKGPSG------VPGSAGPEGEPGLIGPPGPPGLPGPS 1371
Score = 26.9 bits (58), Expect = 4.0
Identities = 26/105 (24%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASE---PRRQGRKNKSGSAARPSEEEAPLPAPIRQ 59
L G PG GLP P PG + E P G G+ P P+ +
Sbjct: 574 LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGE 633
Query: 60 QESSGLHRVRLPPAISVIKAGNPVEDAFPW--NDPEWTTPELSLP 102
+ G+ AGNP + P DP T + P
Sbjct: 634 KGIQGV-------------AGNPGQPGIPGPKGDPGQTITQPGKP 665
Score = 26.9 bits (58), Expect = 4.0
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG 41
G G PG+P P PG + L P G G
Sbjct: 713 GPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKG 749
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/52 (32%), Positives = 18/52 (34%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
GD GLPG+P P G P QG GS E P P
Sbjct: 1205 GDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGP 1256
Score = 26.2 bits (56), Expect = 6.9
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPI 57
GD G+PG PP P P LP G G P + AP P I
Sbjct: 78 GDDGIPG-PPGPKGIRGPPGLP--------GFPGTPGLPGMPGHDGAPGPQGI 121
Score = 26.2 bits (56), Expect = 6.9
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
G+PG PGLP + G + P G K + G P + P P
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGP 1239
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 37.0 bits (84), Expect = 0.004
Identities = 20/50 (40%), Positives = 20/50 (40%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
GDPGLPGLP P PG P G K SG P P P
Sbjct: 1101 GDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGP 1150
Score = 33.5 bits (75), Expect = 0.043
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 5 GDPGLPGL-----PPAPSRASA-PGHLPLASEPRRQGRKNKSGSAARPSEEEAP----LP 54
G PGLPG PP P S PG+ L EP G G P E+ P +P
Sbjct: 1116 GQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1175
Query: 55 APIRQQESSG 64
P Q+ G
Sbjct: 1176 GPAGQKGEPG 1185
Score = 33.1 bits (74), Expect = 0.056
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PG+PGLP P PG EP R G K + G P +P P
Sbjct: 307 GQPGIPGLPGDPGY---PG------EPGRDGEKGQKGDTGPPGPPGLVIPRP 349
Score = 32.3 bits (72), Expect = 0.096
Identities = 19/55 (34%), Positives = 23/55 (41%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPI 57
L G PG PGLP P APG + +G + GS P + P P I
Sbjct: 97 LPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGI 151
Score = 31.2 bits (69), Expect = 0.21
Identities = 19/61 (31%), Positives = 23/61 (37%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQES 62
L+G PGLPG P PG L P +G G E P P+ + Q
Sbjct: 995 LSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPG 1054
Query: 63 S 63
S
Sbjct: 1055 S 1055
Score = 30.8 bits (68), Expect = 0.28
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPI 57
G+PGLPG P P + G L P G K + G P P P I
Sbjct: 1083 GEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGI 1135
Score = 30.8 bits (68), Expect = 0.28
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
++G PG PGLP P GH +P G K K G P
Sbjct: 1135 ISGPPGNPGLPGEPGPVGGGGH---PGQPGPPGEKGKPGQDGIP 1175
Score = 30.0 bits (66), Expect = 0.47
Identities = 27/89 (30%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESSG 64
GD GLPG+P P G P QG GS E P P G
Sbjct: 1205 GDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPG 1264
Query: 65 LHRVRLPPAI---SVIKA--GNPVEDAFP 88
L PP + IK GNP + P
Sbjct: 1265 LPGPEGPPGLPGNGGIKGEKGNPGQPGLP 1293
Score = 29.6 bits (65), Expect = 0.62
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 3 LAGDPGLPGLPPAPSRASAPGH 24
+ G PGLPG P P PGH
Sbjct: 91 IRGPPGLPGFPGTPGLPGMPGH 112
Score = 29.6 bits (65), Expect = 0.62
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 5 GDPGLPGL------PPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP----LP 54
G PG PGL P P PG + ++S P G K G P + P +P
Sbjct: 135 GSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLP---GPKGNPGYPGPPGIQGLPGPTGIP 191
Query: 55 APIRQQESSGLHRVRLPPAI 74
PI GL PP +
Sbjct: 192 GPIGPPGPPGLMGPPGPPGL 211
Score = 29.6 bits (65), Expect = 0.62
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
++G PG PGLP P PG L + +G+ +G P AP
Sbjct: 489 ISGPPGQPGLPGLP---GPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAP 535
Score = 29.6 bits (65), Expect = 0.62
Identities = 16/48 (33%), Positives = 17/48 (35%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G PGLPGLP P PG + G K G P P
Sbjct: 494 GQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFP 541
Score = 29.6 bits (65), Expect = 0.62
Identities = 28/98 (28%), Positives = 33/98 (33%), Gaps = 19/98 (19%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP---------- 52
L G PG PG P P PG + + P +G K + GS P P
Sbjct: 528 LPGIPGAPGAPGFPGSKGEPG--DILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPG 585
Query: 53 LPAPIRQQESSGLHRVRLPPAISVIKAGNPVEDAFPWN 90
LP P + R PP GNP P N
Sbjct: 586 LPGPKGEPGGITFKGERGPP-------GNPGLPGLPGN 616
Score = 29.3 bits (64), Expect = 0.81
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 5 GDPGLPGL--PPAPSRASAP-GHLPL-----ASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PG PGL PP P P G++ L E QG + G + SE++ P+
Sbjct: 195 GPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVE 254
Query: 57 IRQQESSGLHRVRLPP 72
Q+ GL R PP
Sbjct: 255 F-QKGDQGLPGDRGPP 269
Score = 29.3 bits (64), Expect = 0.81
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 1 MALAGDPGL---PGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
+ L GDPGL PGLP P PG +P P G K G P P
Sbjct: 677 VGLPGDPGLPGQPGLPGIPGSKGEPG-IPGIGLPGPPGPKGFPGIPGPPGAPGTP 730
Score = 29.3 bits (64), Expect = 0.81
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
G+PG PGLP P G L P R G G P
Sbjct: 1285 GNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLP 1326
Score = 29.3 bits (64), Expect = 0.81
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
+ G PGL GLP PG +P R G G+ R + P
Sbjct: 1380 IPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLP 1429
Score = 28.9 bits (63), Expect = 1.1
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP-LPAPIRQQESS 63
G+PGLPG P G + P QG + G + P + +P LP +
Sbjct: 1009 GNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDP 1068
Query: 64 GLHRVRLP 71
G+ + LP
Sbjct: 1069 GISSIGLP 1076
Score = 28.5 bits (62), Expect = 1.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 1 MALAGDPGLPGLPPAPSRASAPG----HLPLASEPRRQGRKNKSGS 42
+++ G PGL G P AP PG H+P + E G GS
Sbjct: 416 ISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGS 461
Score = 28.5 bits (62), Expect = 1.4
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG-SAARPSEEEAPLPAP 56
M + G PG PG P R+ PG L + QG+ G + + S+ E LP P
Sbjct: 898 MGMMGPPGPPGPLGIPGRSGVPG---LKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP 951
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PGLPG P PG L +P G GS P LP P
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQP---GLPGIPGSKGEPGIPGIGLPGP 711
Score = 28.1 bits (61), Expect = 1.8
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP---------LPA 55
G+PGLPG P PG E + G+ G A + E P LP
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 56 PIRQQESSGLHRVRLPPAISVIKAGNPVEDAFP 88
Q+ GL + P + K G P FP
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPK-GEPGFHGFP 1231
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G+PGLPG+P + G+ L +P + G + G P + P
Sbjct: 967 GEPGLPGIPGV---SGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNP 1011
Score = 27.3 bits (59), Expect = 3.1
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPA 55
+ GDPGLPG+P P G P G + + G P P P+
Sbjct: 1319 MKGDPGLPGVPGFPGMKGPSG------VPGSAGPEGEPGLIGPPGPPGLPGPS 1365
Score = 26.9 bits (58), Expect = 4.0
Identities = 26/105 (24%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASE---PRRQGRKNKSGSAARPSEEEAPLPAPIRQ 59
L G PG GLP P PG + E P G G+ P P+ +
Sbjct: 574 LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGE 633
Query: 60 QESSGLHRVRLPPAISVIKAGNPVEDAFPW--NDPEWTTPELSLP 102
+ G+ AGNP + P DP T + P
Sbjct: 634 KGIQGV-------------AGNPGQPGIPGPKGDPGQTITQPGKP 665
Score = 26.9 bits (58), Expect = 4.0
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG 41
G G PG+P P PG + L P G G
Sbjct: 713 GPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKG 749
Score = 26.2 bits (56), Expect = 6.9
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPI 57
GD G+PG PP P P LP G G P + AP P I
Sbjct: 78 GDDGIPG-PPGPKGIRGPPGLP--------GFPGTPGLPGMPGHDGAPGPQGI 121
Score = 26.2 bits (56), Expect = 6.9
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
G+PG PGLP + G + P G K + G P + P P
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGP 1239
Score = 25.8 bits (55), Expect = 8.9
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 2 ALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
AL G G PG P R PG P G K + G+ +P
Sbjct: 1246 ALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQP 1290
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 37.0 bits (84), Expect = 0.004
Identities = 20/50 (40%), Positives = 20/50 (40%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
GDPGLPGLP P PG P G K SG P P P
Sbjct: 1101 GDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGP 1150
Score = 33.5 bits (75), Expect = 0.043
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 5 GDPGLPGL-----PPAPSRASA-PGHLPLASEPRRQGRKNKSGSAARPSEEEAP----LP 54
G PGLPG PP P S PG+ L EP G G P E+ P +P
Sbjct: 1116 GQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIP 1175
Query: 55 APIRQQESSG 64
P Q+ G
Sbjct: 1176 GPAGQKGEPG 1185
Score = 33.1 bits (74), Expect = 0.056
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PG+PGLP P PG EP R G K + G P +P P
Sbjct: 307 GQPGIPGLPGDPGY---PG------EPGRDGEKGQKGDTGPPGPPGLVIPRP 349
Score = 32.3 bits (72), Expect = 0.096
Identities = 19/55 (34%), Positives = 23/55 (41%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPI 57
L G PG PGLP P APG + +G + GS P + P P I
Sbjct: 97 LPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGI 151
Score = 31.2 bits (69), Expect = 0.21
Identities = 19/61 (31%), Positives = 23/61 (37%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQES 62
L+G PGLPG P PG L P +G G E P P+ + Q
Sbjct: 995 LSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPG 1054
Query: 63 S 63
S
Sbjct: 1055 S 1055
Score = 30.8 bits (68), Expect = 0.28
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPI 57
G+PGLPG P P + G L P G K + G P P P I
Sbjct: 1083 GEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGI 1135
Score = 30.8 bits (68), Expect = 0.28
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
++G PG PGLP P GH +P G K K G P
Sbjct: 1135 ISGPPGNPGLPGEPGPVGGGGH---PGQPGPPGEKGKPGQDGIP 1175
Score = 29.6 bits (65), Expect = 0.62
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 3 LAGDPGLPGLPPAPSRASAPGH 24
+ G PGLPG P P PGH
Sbjct: 91 IRGPPGLPGFPGTPGLPGMPGH 112
Score = 29.6 bits (65), Expect = 0.62
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 5 GDPGLPGL------PPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP----LP 54
G PG PGL P P PG + ++S P G K G P + P +P
Sbjct: 135 GSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLP---GPKGNPGYPGPPGIQGLPGPTGIP 191
Query: 55 APIRQQESSGLHRVRLPPAI 74
PI GL PP +
Sbjct: 192 GPIGPPGPPGLMGPPGPPGL 211
Score = 29.6 bits (65), Expect = 0.62
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
++G PG PGLP P PG L + +G+ +G P AP
Sbjct: 489 ISGPPGQPGLPGLP---GPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAP 535
Score = 29.6 bits (65), Expect = 0.62
Identities = 16/48 (33%), Positives = 17/48 (35%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G PGLPGLP P PG + G K G P P
Sbjct: 494 GQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFP 541
Score = 29.6 bits (65), Expect = 0.62
Identities = 28/98 (28%), Positives = 33/98 (33%), Gaps = 19/98 (19%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP---------- 52
L G PG PG P P PG + + P +G K + GS P P
Sbjct: 528 LPGIPGAPGAPGFPGSKGEPG--DILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPG 585
Query: 53 LPAPIRQQESSGLHRVRLPPAISVIKAGNPVEDAFPWN 90
LP P + R PP GNP P N
Sbjct: 586 LPGPKGEPGGITFKGERGPP-------GNPGLPGLPGN 616
Score = 29.3 bits (64), Expect = 0.81
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 5 GDPGLPGL--PPAPSRASAP-GHLPL-----ASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PG PGL PP P P G++ L E QG + G + SE++ P+
Sbjct: 195 GPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVE 254
Query: 57 IRQQESSGLHRVRLPP 72
Q+ GL R PP
Sbjct: 255 F-QKGDQGLPGDRGPP 269
Score = 29.3 bits (64), Expect = 0.81
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 1 MALAGDPGL---PGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
+ L GDPGL PGLP P PG +P P G K G P P
Sbjct: 677 VGLPGDPGLPGQPGLPGIPGSKGEPG-IPGIGLPGPPGPKGFPGIPGPPGAPGTP 730
Score = 29.3 bits (64), Expect = 0.81
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
G+PG PGLP P G L P R G G P
Sbjct: 1288 GNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLP 1329
Score = 29.3 bits (64), Expect = 0.81
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
+ G PGL GLP PG +P R G G+ R + P
Sbjct: 1383 IPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLP 1432
Score = 28.9 bits (63), Expect = 1.1
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP-LPAPIRQQESS 63
G+PGLPG P G + P QG + G + P + +P LP +
Sbjct: 1009 GNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDP 1068
Query: 64 GLHRVRLP 71
G+ + LP
Sbjct: 1069 GISSIGLP 1076
Score = 28.5 bits (62), Expect = 1.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 1 MALAGDPGLPGLPPAPSRASAPG----HLPLASEPRRQGRKNKSGS 42
+++ G PGL G P AP PG H+P + E G GS
Sbjct: 416 ISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGS 461
Score = 28.5 bits (62), Expect = 1.4
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG-SAARPSEEEAPLPAP 56
M + G PG PG P R+ PG L + QG+ G + + S+ E LP P
Sbjct: 898 MGMMGPPGPPGPLGIPGRSGVPG---LKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP 951
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PGLPG P PG L +P G GS P LP P
Sbjct: 663 GKPGLPGNPGRDGDVGLPGDPGLPGQP---GLPGIPGSKGEPGIPGIGLPGP 711
Score = 28.1 bits (61), Expect = 1.8
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP---------LPA 55
G+PGLPG P PG E + G+ G A + E P LP
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 56 PIRQQESSGLHRVRLPPAISVIKAGNPVEDAFP 88
Q+ GL + P + K G P FP
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPK-GEPGFHGFP 1231
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G+PGLPG+P + G+ L +P + G + G P + P
Sbjct: 967 GEPGLPGIPGV---SGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNP 1011
Score = 27.3 bits (59), Expect = 3.1
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPA 55
+ GDPGLPG+P P G P G + + G P P P+
Sbjct: 1322 MKGDPGLPGVPGFPGMKGPSG------VPGSAGPEGEPGLIGPPGPPGLPGPS 1368
Score = 26.9 bits (58), Expect = 4.0
Identities = 26/105 (24%), Positives = 34/105 (32%), Gaps = 18/105 (17%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASE---PRRQGRKNKSGSAARPSEEEAPLPAPIRQ 59
L G PG GLP P PG + E P G G+ P P+ +
Sbjct: 574 LPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGE 633
Query: 60 QESSGLHRVRLPPAISVIKAGNPVEDAFPW--NDPEWTTPELSLP 102
+ G+ AGNP + P DP T + P
Sbjct: 634 KGIQGV-------------AGNPGQPGIPGPKGDPGQTITQPGKP 665
Score = 26.9 bits (58), Expect = 4.0
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG 41
G G PG+P P PG + L P G G
Sbjct: 713 GPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKG 749
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/52 (32%), Positives = 18/52 (34%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
GD GLPG+P P G P QG GS E P P
Sbjct: 1205 GDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGP 1256
Score = 26.2 bits (56), Expect = 6.9
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPI 57
GD G+PG PP P P LP G G P + AP P I
Sbjct: 78 GDDGIPG-PPGPKGIRGPPGLP--------GFPGTPGLPGMPGHDGAPGPQGI 121
Score = 26.2 bits (56), Expect = 6.9
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
G+PG PGLP + G + P G K + G P + P P
Sbjct: 1190 GNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGP 1239
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 35.4 bits (80), Expect = 0.011
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQ---GRKNKSGSAARPSEEEAPLPAPI 57
L G+PGLPG PP PS PG L +P + G K G A P P P I
Sbjct: 90 LQGEPGLPG-PPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGI 146
Score = 31.2 bits (69), Expect = 0.21
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 5 GDPGLPGL--PPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G GLPG PP P P + + +P +QG G P E+ AP
Sbjct: 130 GPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAP 179
Score = 30.0 bits (66), Expect = 0.47
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
G PG GLP AP A PG P +P G K + G A P
Sbjct: 276 GIPGTKGLPGAPGIAGPPGP-PGFGKPGLPGLKGERGPAGLP 316
Score = 29.3 bits (64), Expect = 0.81
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
+++ G PG G AP PG P G+K + G A E LP P
Sbjct: 152 ISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGP 207
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 35.0 bits (79), Expect = 0.015
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 7 PGLPGL-PPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPA-----PIRQQ 60
P P L P AP RA P A EP R G + P APLPA P+R
Sbjct: 306 PAFPALLPAAPCRALLPLCAYGAGEPARLGAREAEVPPTAPPLLLAPLPAAAPAKPLRGP 365
Query: 61 ESSGLH---RVRLPPAISVIKAGNP 82
+ G H +RLP A+ P
Sbjct: 366 AAGGAHLYCPLRLPAALQAASVRRP 390
Score = 25.8 bits (55), Expect = 8.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 7 PGL-----PGLPPAPSRA-SAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ 60
PGL PGLP AP A +AP + S R++ R + +G + ++ L P R +
Sbjct: 225 PGLRPEEAPGLPAAPPPAPAAPASPRMRSPARQEERASPAGKFSSSFAIDSILRKPFRSR 284
>gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens]
Length = 978
Score = 34.7 bits (78), Expect = 0.019
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 8 GLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESSGLHR 67
GLP +PP SRA PG+ P A RR A + A PAP R Q L
Sbjct: 486 GLP-MPPWRSRAEYPGYNPNAGVTRR----------ASDPAQAADRPAPARVQRFKSLGC 534
Query: 68 VRLPPAIS 75
V PP ++
Sbjct: 535 VHTPPTVA 542
>gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens]
Length = 1106
Score = 34.7 bits (78), Expect = 0.019
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 8 GLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESSGLHR 67
GLP +PP SRA PG+ P A RR A + A PAP R Q L
Sbjct: 614 GLP-MPPWRSRAEYPGYNPNAGVTRR----------ASDPAQAADRPAPARVQRFKSLGC 662
Query: 68 VRLPPAIS 75
V PP ++
Sbjct: 663 VHTPPTVA 670
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 34.7 bits (78), Expect = 0.019
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 21/86 (24%)
Query: 4 AGDPGLPGLPPAPSRASAPG-------HLPLAS-----------EPRRQGRKNKSGSAAR 45
A PG PG PP P AS PG HL AS P + S +A+
Sbjct: 50 AASPGTPGPPPPPPAASGPGPGAAAAPHLLAASILADLRGGPGAAPGGASPASSSSAASS 109
Query: 46 PSEEEAPLPAPIRQQESSGLHRVRLP 71
PS AP AP +S HR P
Sbjct: 110 PSSGRAPGAAPSAAAKS---HRCPFP 132
>gi|239755340 PREDICTED: similar to hCG2040250 [Homo sapiens]
Length = 180
Score = 34.7 bits (78), Expect = 0.019
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 7 PGLPGLPPAPSRASAPGHL-------------------PLASEPRRQGRKNKSGSAARPS 47
PG P LPP P+R + P H L E +RQ ++ + + R
Sbjct: 4 PGTP-LPPTPARGTEPAHNCDSSGRIGHHRKRKFTVAPTLRRETKRQKKETGAWTTFRGE 62
Query: 48 EEEAPLPAPI--RQQESSGLHRVRLPPAISVIKAGNPVEDAFPWND-PEWTTPELSLP 102
EE A R++ S HRVR+PP + + N + W+ +T L LP
Sbjct: 63 LEERLSTAECGRRRRLRSAFHRVRIPPDSAPPRPRNSLPQLLRWDSGAAYTALALVLP 120
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 34.7 bits (78), Expect = 0.019
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE----EAPLPAP 56
G PGLPGLP P G + EP +G + SG E + LP P
Sbjct: 646 GSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGP 701
Score = 32.7 bits (73), Expect = 0.073
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSE 48
L G PG+PG+P A A G +P + G K G P E
Sbjct: 569 LQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGE 614
Score = 32.0 bits (71), Expect = 0.12
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP---LPAPIRQQ 60
AG+PG PG P P A G P G K + G P P +P P
Sbjct: 307 AGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPP 366
Query: 61 ESSGL 65
++GL
Sbjct: 367 GTAGL 371
Score = 29.3 bits (64), Expect = 0.81
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
G G PGLP A G + EP RQG K + G E A P
Sbjct: 418 GRSGYPGLPGMRGHKGAKGEI---GEPGRQGHKGEEGDQGELGEVGAQGP 464
Score = 29.3 bits (64), Expect = 0.81
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
GD GL GLP P A G G+ + G++ +P ++ P
Sbjct: 565 GDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPP 612
Score = 28.1 bits (61), Expect = 1.8
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQ 59
AG+PG PGL PG P +G + + G+ P + P AP Q
Sbjct: 705 AGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDQ 760
Score = 27.3 bits (59), Expect = 3.1
Identities = 15/48 (31%), Positives = 17/48 (35%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G PG+PG P + PG L P G G A AP
Sbjct: 547 GIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAP 594
Score = 26.2 bits (56), Expect = 6.9
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 8 GLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
G+PG P P A PG L GR+ G P
Sbjct: 358 GIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPP 396
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 34.7 bits (78), Expect = 0.019
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE----EAPLPAP 56
G PGLPGLP P G + EP +G + SG E + LP P
Sbjct: 403 GSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASGEEGEAGERGELGDIGLPGP 458
Score = 32.7 bits (73), Expect = 0.073
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSE 48
L G PG+PG+P A A G +P + G K G P E
Sbjct: 326 LQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGE 371
Score = 32.0 bits (71), Expect = 0.12
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP---LPAPIRQQ 60
AG+PG PG P P A G P G K + G P P +P P
Sbjct: 64 AGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPP 123
Query: 61 ESSGL 65
++GL
Sbjct: 124 GTAGL 128
Score = 29.3 bits (64), Expect = 0.81
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
G G PGLP A G + EP RQG K + G E A P
Sbjct: 175 GRSGYPGLPGMRGHKGAKGEI---GEPGRQGHKGEEGDQGELGEVGAQGP 221
Score = 29.3 bits (64), Expect = 0.81
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
GD GL GLP P A G G+ + G++ +P ++ P
Sbjct: 322 GDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPP 369
Score = 28.1 bits (61), Expect = 1.8
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQ 59
AG+PG PGL PG P +G + + G+ P + P AP Q
Sbjct: 462 AGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGEQGATGLPGVQGPPGRAPTDQ 517
Score = 27.3 bits (59), Expect = 3.1
Identities = 15/48 (31%), Positives = 17/48 (35%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G PG+PG P + PG L P G G A AP
Sbjct: 304 GIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAP 351
Score = 26.2 bits (56), Expect = 6.9
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 8 GLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
G+PG P P A PG L GR+ G P
Sbjct: 115 GIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPP 153
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 34.3 bits (77), Expect = 0.025
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 1 MALAGDPGLPGL-----PPAPSRAS-APGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
M AG PG PGL PP P+ A+ APG A EP + G K + G E P
Sbjct: 398 MGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIP 455
Score = 32.3 bits (72), Expect = 0.096
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP-------LPAPI 57
G+PG PG +P + PG P G G A +P E+ +P P P+
Sbjct: 888 GNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPL 947
Query: 58 RQQESSGLHRVRLPPAI 74
+G + PP +
Sbjct: 948 GIAGITGARGLAGPPGM 964
Score = 29.6 bits (65), Expect = 0.62
Identities = 17/48 (35%), Positives = 19/48 (39%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
GD G PG P A APG A P +G K +G P P
Sbjct: 675 GDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTP 722
Score = 29.6 bits (65), Expect = 0.62
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
G+ G PG P AP PG + A + +G +G A P
Sbjct: 1035 GENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAP 1076
Score = 28.9 bits (63), Expect = 1.1
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 4 AGDPGLPGL------PPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPA 55
AG PG G+ P P A PG L P G G + P ++ P PA
Sbjct: 851 AGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPA 908
Score = 28.5 bits (62), Expect = 1.4
Identities = 28/88 (31%), Positives = 32/88 (36%), Gaps = 14/88 (15%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP----LPAPIRQQ 60
G PG G P A PG A P QG K + GS P P LP P
Sbjct: 828 GAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSN 887
Query: 61 ESSGLHRVRLPPAISVIKAGNPVEDAFP 88
+ G PP S G+P +D P
Sbjct: 888 GNPG------PPGPS----GSPGKDGPP 905
Score = 28.1 bits (61), Expect = 1.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 5 GDPGLPGLPPAPSRASAPG 23
GDPG+PG P +P PG
Sbjct: 121 GDPGIPGQPGSPGSPGPPG 139
Score = 28.1 bits (61), Expect = 1.8
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 4 AGDPGLPGLP--------PAPSRASAPGHLPLASEPR-RQGRKNKSGSAARPSEEEAPLP 54
+G PG PG P P + S P P A P G+ +SG RP E P P
Sbjct: 188 SGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGP 247
Query: 55 APIR 58
I+
Sbjct: 248 PGIK 251
Score = 28.1 bits (61), Expect = 1.8
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
G+PG GLP A APG A G K +G P
Sbjct: 471 GEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAP 512
Score = 27.7 bits (60), Expect = 2.4
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSA-------ARPSEEEAPLPAP 56
G PGL G P APG + P +GR G+A AR S+ + P P
Sbjct: 279 GAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGP 337
Score = 27.7 bits (60), Expect = 2.4
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
AG+PG G+P P PG + G G + RP
Sbjct: 521 AGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRP 563
Score = 27.7 bits (60), Expect = 2.4
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
AG PG GLP P PG + P + G +G+ P
Sbjct: 872 AGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAP 914
Score = 27.7 bits (60), Expect = 2.4
Identities = 34/108 (31%), Positives = 37/108 (34%), Gaps = 28/108 (25%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLAS------------------EPRRQGRKNKSG--SA 43
AG PG G P A APG L +A P QG K +SG A
Sbjct: 926 AGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGA 985
Query: 44 ARPSEEEAPLPAPIRQQESSGLHRVRLPPAISVIKAGNPVEDAFPWND 91
S E P P P Q GL P + GNP D P D
Sbjct: 986 NGLSGERGP-PGP---QGLPGLAGTAGEPG----RDGNPGSDGLPGRD 1025
Score = 27.7 bits (60), Expect = 2.4
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 3 LAGDPGLPGLPPAPS------RASAPGHLPLASE---PRRQGRKNKSGSAARPSEEEAP 52
LAG PG+PG +P + PG L+ E P QG +G+A P + P
Sbjct: 958 LAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNP 1016
Score = 27.3 bits (59), Expect = 3.1
Identities = 18/50 (36%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
LAG PG G P P GH P QG + G A PS P
Sbjct: 169 LAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAG-PSGPPGP 217
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
AG PG PG P +PG P G+ SG P
Sbjct: 176 AGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPP 218
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/49 (28%), Positives = 17/49 (34%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
AG+PG G P G + P +G K GS P P
Sbjct: 431 AGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLP 479
Score = 26.9 bits (58), Expect = 4.0
Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESS 63
AG PG+PG + +PG EP G +G P P I ++
Sbjct: 452 AGIPGVPGAKGEDGKDGSPG------EPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGP 505
Query: 64 GLHRVRLPPAISVIKAGNPVEDAFP 88
R PA AG P D P
Sbjct: 506 AGERGAPGPAGPRGAAGEPGRDGVP 530
Score = 26.9 bits (58), Expect = 4.0
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP-----APIRQ 59
G G+PG P P PG E R G SG +P P P AP +
Sbjct: 534 GMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKN 593
Query: 60 QESSG 64
E G
Sbjct: 594 GERGG 598
Score = 26.9 bits (58), Expect = 4.0
Identities = 20/64 (31%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP----LPAPIRQQ 60
G PGL G P R PG L G K G P AP P P+
Sbjct: 999 GLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPA 1058
Query: 61 ESSG 64
SG
Sbjct: 1059 GKSG 1062
Score = 26.6 bits (57), Expect = 5.2
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE 49
GD G PG P A APG P G G A P E
Sbjct: 663 GDAGAPGAPGGKGDAGAPGE---RGPPGLAGAPGLRGGAGPPGPE 704
Score = 26.6 bits (57), Expect = 5.2
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
G PG G P AP + PG P +G G A P
Sbjct: 804 GPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPP 845
Score = 25.8 bits (55), Expect = 8.9
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
G+ GLPG P A PG + GR + G P
Sbjct: 240 GERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAP 281
Score = 25.8 bits (55), Expect = 8.9
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 9/48 (18%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G G PG P P A PG G K + G A P AP
Sbjct: 327 GSDGQPGPPGPPGTAGFPG---------SPGAKGEVGPAGSPGSNGAP 365
>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
Length = 549
Score = 34.3 bits (77), Expect = 0.025
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEA--PLPAPIRQQE 61
A PG P L P PG L L +EP+ S A P E A PLPA Q
Sbjct: 114 ASAPGAPPLVRVPRPVEPPGDLGLPTEPQDTPGGPASEPAQPPGERSADPPLPALELAQA 173
Query: 62 SSGLHRVRLPPAISVIKAGNPVED 85
+ PP + +A +P D
Sbjct: 174 TERPSADAAPPPRAPSEAASPCSD 197
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 33.9 bits (76), Expect = 0.033
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 22/101 (21%)
Query: 8 GLPGLPPAPSRASAPGHLPLASEPRRQGRKN------KSGSAARPSEEEAPLPAPIRQQE 61
G P LPP ++P PL S S S A PS EE+ LP P+
Sbjct: 574 GTPSLPPPRVVGASPSESPLPSPATNTAGSTCSSLSPMSSSPANPSSEESQLPGPL--GP 631
Query: 62 SSGLHRVRLPPAISVIKAGNPVEDAFPWNDPEWTTPELSLP 102
S+ H PP +P E P+ PE P SLP
Sbjct: 632 SAFFH----PPT-------HPQETGSPFPSPE---PPHSLP 658
Score = 28.5 bits (62), Expect = 1.4
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 5 GDPGLPGLPPAPSRASAPGH---------LPLASEPRRQGRKNKSGSAARPSEEEAPLPA 55
G PGLP PPA R A H LA + + +G+ + + PS P P
Sbjct: 769 GPPGLPS-PPAAPRVPADAHAGLLSHAKTFLLAGDAQAEGKDDPLRTGFLPSLAATPFPL 827
Query: 56 P 56
P
Sbjct: 828 P 828
Score = 27.7 bits (60), Expect = 2.4
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 10 PGLPPAPSRASAPGHLPLASE-------PRRQGRKNKSGSAARPSEEEA-------PLPA 55
P P PSR+ AP LP ++ PR G + GS + E+ +P
Sbjct: 3737 PAKPSFPSRSPAPERLPARAQAKSCTKGPREAGEQGPHGSLGPKEKGESSTKRKKGQVPG 3796
Query: 56 PIRQQESSGLHRVRLPP 72
P R + R P
Sbjct: 3797 PARSESVGSFGRAPSAP 3813
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 33.9 bits (76), Expect = 0.033
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG-SAARPSEEEAPLPAPI 57
GDPGLPGL P APG P G+ + G + + S+ E P PI
Sbjct: 1431 GDPGLPGLQGPPGFEGAPGQQGPFGMPGMPGQSMRVGYTLVKHSQSEQVPPCPI 1484
Score = 31.6 bits (70), Expect = 0.16
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 5 GDPGLPGLPPAPSRASAPG-HLP--LASEPRRQGRKNKSGSAARPSEEEAP-LPAPIRQQ 60
GD G PGL APG LP +A +P GR G RP P P P Q
Sbjct: 1229 GDRGFPGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQ 1288
Query: 61 ESSG 64
+G
Sbjct: 1289 GDTG 1292
Score = 30.4 bits (67), Expect = 0.36
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE-EAPLPAPI 57
+ G PG+PGLP PG L P G+ SG A P E+ + P P+
Sbjct: 902 VGFVGFPGIPGLP------GIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPV 953
Score = 28.9 bits (63), Expect = 1.1
Identities = 15/50 (30%), Positives = 17/50 (34%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
G PGLPG+P PG R G + G P P P
Sbjct: 909 GIPGLPGIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSP 958
Score = 28.5 bits (62), Expect = 1.4
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 5 GDPGLPGLP--PAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PGLPGLP P PG L P G K G P LP P
Sbjct: 579 GVPGLPGLPGLPGDGGQGFPGEKGLPGLP---GEKGHPGPPGLPGNGLPGLPGP 629
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 3 LAGDPGLPGLPPAPSRASAPG--HLP-LASEPRRQGRKNKSGSAARPSEEEAP 52
L G PG PG + +PG HLP L P +G K G P ++ P
Sbjct: 683 LPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLP 735
Score = 28.1 bits (61), Expect = 1.8
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 4 AGDPGLPGLPPAP----------SRASAPGHLPLASEPRRQGRKNKSGSAARPSE 48
AG PG PGLP AP + PG + + P +G +G P E
Sbjct: 992 AGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGE 1046
Score = 27.3 bits (59), Expect = 3.1
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE 49
+ L G GLPG+P + PG +P G + G P ++
Sbjct: 1403 VGLQGSKGLPGIPGKDGPSGLPGPPGALGDPGLPGLQGPPGFEGAPGQQ 1451
Score = 26.9 bits (58), Expect = 4.0
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG 41
G+ GLPG P P + PG + P G K +G
Sbjct: 718 GEKGLPGFPGLPGKDGLPG---MIGSPGLPGSKGATG 751
Score = 26.9 bits (58), Expect = 4.0
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGS 42
+ ++GD GLPG P P A G L QG GS
Sbjct: 1117 VGVSGDVGLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGS 1158
Score = 26.6 bits (57), Expect = 5.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGS 42
L G GLPG P +PG +A P G K + GS
Sbjct: 862 LPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGS 901
Score = 26.2 bits (56), Expect = 6.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 3 LAGDPGLPGLPPAPSRASAPG 23
+ GDPGLPGL APG
Sbjct: 170 MKGDPGLPGLDGITGPQGAPG 190
Score = 26.2 bits (56), Expect = 6.9
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 17/111 (15%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESSG 64
GDPG+PGLP L + QG + SG P+ + +P + Q G
Sbjct: 362 GDPGVPGLP------------GLKGDEGIQGLRGPSGVPGLPA--LSGVPGALGPQGFPG 407
Query: 65 LHRVRLPPAISVI-KAGNPVEDAFPW--NDPEWTTPELSLPILATSKAIIP 112
L + P + I AG P D P P +PE L ++ P
Sbjct: 408 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPEFETETLHNKESGFP 458
Score = 26.2 bits (56), Expect = 6.9
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQES 62
L G+ GL G+ P PG + +P G K K+G + P P +
Sbjct: 1317 LPGELGLKGMRGEPGFMGTPGKVGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAE--- 1373
Query: 63 SGLHRVRLPP 72
V++PP
Sbjct: 1374 ----AVQVPP 1379
Score = 25.8 bits (55), Expect = 8.9
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP-LPAP 56
+G PG PG P PG +P G K + GS E P P P
Sbjct: 666 SGFPGTPGFPGPKGSRGLPG---TPGQPGSSGSKGEPGSPGLVHLPELPGFPGP 716
Score = 25.8 bits (55), Expect = 8.9
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 5 GDPGLPGLP---------PAPSRASAPGHLPL---ASEPRRQGRKNKSGSAARP 46
GDPG PG+P P + PG L L EP G K G P
Sbjct: 1292 GDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDP 1345
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 33.9 bits (76), Expect = 0.033
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG-SAARPSEEEAPLPAPI 57
GDPGLPGL P APG P G+ + G + + S+ E P PI
Sbjct: 1430 GDPGLPGLQGPPGFEGAPGQQGPFGMPGMPGQSMRVGYTLVKHSQSEQVPPCPI 1483
Score = 31.6 bits (70), Expect = 0.16
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 5 GDPGLPGLPPAPSRASAPG-HLP--LASEPRRQGRKNKSGSAARPSEEEAP-LPAPIRQQ 60
GD G PGL APG LP +A +P GR G RP P P P Q
Sbjct: 1228 GDRGFPGLQGPAGLPGAPGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPGPPGPSSNQ 1287
Query: 61 ESSG 64
+G
Sbjct: 1288 GDTG 1291
Score = 30.4 bits (67), Expect = 0.36
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE-EAPLPAPI 57
+ G PG+PGLP PG L P G+ SG A P E+ + P P+
Sbjct: 901 VGFVGFPGIPGLP------GIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPV 952
Score = 28.9 bits (63), Expect = 1.1
Identities = 15/50 (30%), Positives = 17/50 (34%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
G PGLPG+P PG R G + G P P P
Sbjct: 908 GIPGLPGIPGTRGLKGIPGSTGKMGPSGRAGTPGEKGDRGNPGPVGIPSP 957
Score = 28.5 bits (62), Expect = 1.4
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 5 GDPGLPGLP--PAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PGLPGLP P PG L P G K G P LP P
Sbjct: 578 GVPGLPGLPGLPGDGGQGFPGEKGLPGLP---GEKGHPGPPGLPGNGLPGLPGP 628
Score = 28.1 bits (61), Expect = 1.8
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 3 LAGDPGLPGLPPAPSRASAPG--HLP-LASEPRRQGRKNKSGSAARPSEEEAP 52
L G PG PG + +PG HLP L P +G K G P ++ P
Sbjct: 682 LPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLPGFPGLPGKDGLP 734
Score = 28.1 bits (61), Expect = 1.8
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 4 AGDPGLPGLPPAP----------SRASAPGHLPLASEPRRQGRKNKSGSAARPSE 48
AG PG PGLP AP + PG + + P +G +G P E
Sbjct: 991 AGRPGPPGLPGAPGLPGIIKGVSGKPGPPGFMGIRGLPGLKGSSGITGFPGMPGE 1045
Score = 27.3 bits (59), Expect = 3.1
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE 49
+ L G GLPG+P + PG +P G + G P ++
Sbjct: 1402 VGLQGSKGLPGIPGKDGPSGLPGPPGALGDPGLPGLQGPPGFEGAPGQQ 1450
Score = 26.9 bits (58), Expect = 4.0
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG 41
G+ GLPG P P + PG + P G K +G
Sbjct: 717 GEKGLPGFPGLPGKDGLPG---MIGSPGLPGSKGATG 750
Score = 26.9 bits (58), Expect = 4.0
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGS 42
+ ++GD GLPG P P A G L QG GS
Sbjct: 1116 VGVSGDVGLPGAPGFPGVAGMRGEPGLPGSSGHQGAIGPLGS 1157
Score = 26.6 bits (57), Expect = 5.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGS 42
L G GLPG P +PG +A P G K + GS
Sbjct: 861 LPGLKGLPGNPGLVGLKGSPGSPGVAGLPALSGPKGEKGS 900
Score = 26.2 bits (56), Expect = 6.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 3 LAGDPGLPGLPPAPSRASAPG 23
+ GDPGLPGL APG
Sbjct: 169 MKGDPGLPGLDGITGPQGAPG 189
Score = 26.2 bits (56), Expect = 6.9
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 17/111 (15%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESSG 64
GDPG+PGLP L + QG + SG P+ + +P + Q G
Sbjct: 361 GDPGVPGLP------------GLKGDEGIQGLRGPSGVPGLPA--LSGVPGALGPQGFPG 406
Query: 65 LHRVRLPPAISVI-KAGNPVEDAFPW--NDPEWTTPELSLPILATSKAIIP 112
L + P + I AG P D P P +PE L ++ P
Sbjct: 407 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGPPSPEFETETLHNKESGFP 457
Score = 26.2 bits (56), Expect = 6.9
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQES 62
L G+ GL G+ P PG + +P G K K+G + P P +
Sbjct: 1316 LPGELGLKGMRGEPGFMGTPGKVGPPGDPGFPGMKGKAGPRGSSGLQGDPGQTPTAE--- 1372
Query: 63 SGLHRVRLPP 72
V++PP
Sbjct: 1373 ----AVQVPP 1378
Score = 25.8 bits (55), Expect = 8.9
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP-LPAP 56
+G PG PG P PG +P G K + GS E P P P
Sbjct: 665 SGFPGTPGFPGPKGSRGLPG---TPGQPGSSGSKGEPGSPGLVHLPELPGFPGP 715
Score = 25.8 bits (55), Expect = 8.9
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 5 GDPGLPGLP---------PAPSRASAPGHLPL---ASEPRRQGRKNKSGSAARP 46
GDPG PG+P P + PG L L EP G K G P
Sbjct: 1291 GDPGFPGIPGPKGPKGDQGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDP 1344
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 33.5 bits (75), Expect = 0.043
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PGLPGLP PG +P R+G + K G A P LP P
Sbjct: 567 GPPGLPGLPGFKGDKGVPG------KPGREGTEGKKGEAGPPG-----LPGP 607
Score = 31.6 bits (70), Expect = 0.16
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 4 AGDPGLPGLPPAPSRASAPGHL---PLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ 60
AG+PG PG AP + PG + L P + G + + G+A E P P+ +
Sbjct: 397 AGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAG-----EEGSPGPVGPR 451
Query: 61 ESSGLHRVRLPP 72
G + PP
Sbjct: 452 GDPGAPGLPGPP 463
Score = 30.8 bits (68), Expect = 0.28
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 3 LAGDPGLPGLPPAPSRASAPG-----HLP-LASEPRRQGRKNKSGSAARPSEEEAP-LPA 55
+AG G PG+ +P + PG LP + E ++GR K G P + P LP
Sbjct: 655 IAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPG 714
Query: 56 P 56
P
Sbjct: 715 P 715
Score = 29.6 bits (65), Expect = 0.62
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
AG+PGLPG A GH + P G + +SG+ P +E P
Sbjct: 707 AGEPGLPGPEGARGPPGFKGHTGDSGAP---GPRGESGAMGLPGQEGLP 752
Score = 29.3 bits (64), Expect = 0.81
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP-LPAPIRQQESS 63
GD G PG+P +P PG + +A P G GS P P P P
Sbjct: 487 GDRGAPGIPGSPGSRGDPG-IGVAGPPGPSGPPGDKGS---PGSRGLPGFPGPQGPAGRD 542
Query: 64 GLHRVRLPPAISVI 77
GL + P I+++
Sbjct: 543 GLSSLLSPGDINLL 556
Score = 28.9 bits (63), Expect = 1.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G+ G+PG P + PG +P +G K G +P + P
Sbjct: 819 GEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIP 866
Score = 28.5 bits (62), Expect = 1.4
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP----LPAPIRQQ 60
GDPGLPG P R G P +G++ G+ AP P P
Sbjct: 356 GDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPP 415
Query: 61 ESSGLHRVRLPP 72
S G +R P
Sbjct: 416 GSVGAPGLRGTP 427
Score = 28.1 bits (61), Expect = 1.8
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
GDPG PGLP P + G L P G G P +P
Sbjct: 452 GDPGAPGLPGPPGKGK-DGEPGLRGSPGLPGPLGTKGDRGAPGIPGSP 498
Score = 27.7 bits (60), Expect = 2.4
Identities = 15/48 (31%), Positives = 18/48 (37%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G+ G PGLP P PG L G K + G+ P P
Sbjct: 353 GEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNP 400
>gi|21536402 bridging integrator 1 isoform 2 [Homo sapiens]
Length = 550
Score = 33.5 bits (75), Expect = 0.043
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 13 PPAPSRASAPGHLPLASEPRRQGRKNKSGSAAR-PSEEEAPLPAPIRQQESS-GLHRVRL 70
PP S A+ P + + EP G + + PS+ EAP P +Q S L L
Sbjct: 299 PPDGSPAATP-EIRVNHEPEPAGGATPGATLPKSPSQFEAP--GPFSEQASLLDLDFDPL 355
Query: 71 PPAISVIKAGNPVEDAFPWNDPEWT-TPELSLP 102
PP S +KA P + PW+ E T +P SLP
Sbjct: 356 PPVTSPVKAPTPSGQSIPWDLWEPTESPAGSLP 388
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 33.5 bits (75), Expect = 0.043
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP-LPAPIRQQE 61
L G+PGLPG PP RA PG P G +G P P P +
Sbjct: 482 LKGEPGLPG-PPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETG 540
Query: 62 SSGLH 66
+GLH
Sbjct: 541 IAGLH 545
Score = 30.8 bits (68), Expect = 0.28
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 5 GDPGLPGLPPAP---SRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQE 61
G PGL GLP AP + PG EP G K G A LP P
Sbjct: 237 GKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSG 296
Query: 62 SSGLHRVRLPPAI 74
+ G R PP +
Sbjct: 297 AKGEPGTRGPPGL 309
Score = 29.6 bits (65), Expect = 0.62
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 3 LAGDPGLPGL--------PPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
L G PGLPG PP P + PG P P +G + SG A +P
Sbjct: 356 LGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPP--GVPGIRGDQGPSGLAGKP 405
Score = 28.5 bits (62), Expect = 1.4
Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ 60
M AG PGLPG + PG L EP G + G P P P+ I
Sbjct: 122 MGKAGPPGLPG------KVGPPGQPGLRGEP---GIRGDQGLRGPPGPPGLPGPSGITIP 172
Query: 61 ESSGLHRVRLPP 72
G V PP
Sbjct: 173 GKPGAQGVPGPP 184
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 3 LAGDPGL--PGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE 49
L GD G+ PGLP AP + APG P P G+ G P ++
Sbjct: 204 LKGDNGVGQPGLPGAPGQGGAPGP-PGLPGPAGLGKPGLDGLPGAPGDK 251
Score = 27.7 bits (60), Expect = 2.4
Identities = 16/41 (39%), Positives = 17/41 (41%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSA 43
LAG PG+PG P PG EP GR G A
Sbjct: 401 LAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVA 441
Score = 25.8 bits (55), Expect = 8.9
Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESSG 64
G PGLPG A PG L EP G + G L P S+G
Sbjct: 316 GMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQG--------LGGPPGLPGSAG 367
Query: 65 LHRVRLPP 72
L R PP
Sbjct: 368 LPGRRGPP 375
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 33.5 bits (75), Expect = 0.043
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 5 GDPGLPGLPPA------PSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIR 58
GDPGLPGLP + PG L P + GR G+ + + P +
Sbjct: 190 GDPGLPGLPGSWGAGGPAGPTGYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQMGDPGEVG 249
Query: 59 QQESSGLHRVRLPPAISVIK 78
QQ S G + PP + K
Sbjct: 250 QQGSPGPTLLVEPPDFCLYK 269
Score = 31.6 bits (70), Expect = 0.16
Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP----LPAP 56
+ G PGLPG P +P G P G K G RP P +P P
Sbjct: 835 IPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPGP 892
Score = 30.0 bits (66), Expect = 0.47
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPL---ASEPRRQGRKNKSG 41
G PG PGLP AP PG + P QG K K G
Sbjct: 436 GKPGSPGLPGAPGLQGLPGSSVIYCSVGNPGPQGIKGKVG 475
Score = 29.6 bits (65), Expect = 0.62
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSG 41
L GDPG+PG P + +PG L ++G K SG
Sbjct: 1155 LQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASG 1193
Score = 29.3 bits (64), Expect = 0.81
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G G PGLP P A PG S P + G+ G P + P
Sbjct: 408 GPQGFPGLPGLPGEAGIPGRPD--SAPGKPGKPGSPGLPGAPGLQGLP 453
Score = 29.3 bits (64), Expect = 0.81
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEA-PLPAPIRQQESS 63
GD G+PGL P PG L +P G G + P L + +S
Sbjct: 1133 GDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGAS 1192
Query: 64 GLHRVRLPPAISV 76
GLH V P + +
Sbjct: 1193 GLHDVGPPGPVGI 1205
Score = 28.9 bits (63), Expect = 1.1
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIR 58
AG PG+PG P APG P G G +P + P PA ++
Sbjct: 815 AGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMK 869
Score = 28.9 bits (63), Expect = 1.1
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESSG 64
G+ G PG P PG ++ P +G + G+ P +E A I Q+ + G
Sbjct: 918 GERGKPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGE--MAIISQKGTPG 975
Query: 65 LHRVRLPPAISVIKAGNPVEDAFPWNDPEWTTP 97
+ G P +D FP + TP
Sbjct: 976 -------------EPGPPGDDGFPGERGDKGTP 995
Score = 28.5 bits (62), Expect = 1.4
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
MA+ G PG P P PG P QGR+ + G P
Sbjct: 965 MAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPP 1010
Score = 28.1 bits (61), Expect = 1.8
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 5 GDPGLPGL-PPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQESS 63
GDPG PG+ PP P P P G +G+ R + ++ P P P Q
Sbjct: 1213 GDPGSPGISPPGPRGKKGP-----PGPPGSSGPPGPAGATGR-APKDIPDPGPPGDQGPP 1266
Query: 64 GLHRVR-------LPPAISVIKAGNPVEDAFP 88
G R LP ++ +++ G P + P
Sbjct: 1267 GPDGPRGAPGPPGLPGSVDLLR-GEPGDCGLP 1297
Score = 27.7 bits (60), Expect = 2.4
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 5 GDPGLPGLP--------PAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G PGLPG+P P P P LP P G + K G+ P + P
Sbjct: 882 GPPGLPGIPGPFGDDGLPGPPGPKGPRGLP--GFPGFPGERGKPGAEGCPGAKGEP 935
Score = 27.7 bits (60), Expect = 2.4
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE----------EAP 52
L G+PG GLP P PG P G+ + G P + E
Sbjct: 1287 LRGEPGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHGFPGPPGEKG 1346
Query: 53 LPAPIRQQESSGLHRVRLPP 72
LP P ++ +GL R P
Sbjct: 1347 LPGPPGRKGPTGLPGPRGEP 1366
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE 49
GD GLPG P PG E + G + G+ P E+
Sbjct: 894 GDDGLPGPPGPKGPRGLPGFPGFPGERGKPGAEGCPGAKGEPGEK 938
Score = 27.3 bits (59), Expect = 3.1
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 5 GDP----GLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
GDP G PG P PGH + E G + GS RP
Sbjct: 1075 GDPASHFGPPGPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRP 1120
Score = 26.2 bits (56), Expect = 6.9
Identities = 15/44 (34%), Positives = 17/44 (38%)
Query: 3 LAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
+ G G PG P A A PG L L R+G G P
Sbjct: 781 IKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGPP 824
Score = 25.8 bits (55), Expect = 8.9
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARP 46
G PG+PG P P +PG +P G +G P
Sbjct: 831 GAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLP 872
Score = 25.8 bits (55), Expect = 8.9
Identities = 15/48 (31%), Positives = 16/48 (33%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G PG PG A PG P R G SG P + P
Sbjct: 1091 GSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMP 1138
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 33.5 bits (75), Expect = 0.043
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 7 PGLPGLPPAPSRASAPGHLPLASEPRRQ---GRKNKSGSAARPSEEEAPLPAP 56
P PG P P+ +A G P A++P G G++A P+ AP PAP
Sbjct: 696 PSYPGANPQPAFGAAEGQPPGAAKPALTPSFGSSFTFGNSAAPAPATAPTPAP 748
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 33.5 bits (75), Expect = 0.043
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLPAP 56
G PGLPGLP PG +P R+G + K G A P LP P
Sbjct: 1120 GPPGLPGLPGFKGDKGVPG------KPGREGTEGKKGEAGPPG-----LPGP 1160
Score = 31.6 bits (70), Expect = 0.16
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 4 AGDPGLPGLPPAPSRASAPGHL---PLASEPRRQGRKNKSGSAARPSEEEAPLPAPIRQQ 60
AG+PG PG AP + PG + L P + G + + G+A E P P+ +
Sbjct: 915 AGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAG-----EEGSPGPVGPR 969
Query: 61 ESSGLHRVRLPP 72
G + PP
Sbjct: 970 GDPGAPGLPGPP 981
Score = 30.8 bits (68), Expect = 0.28
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSE 48
+ + G G PGLP P R APG E +G K + G P +
Sbjct: 565 VGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGK 612
Score = 30.8 bits (68), Expect = 0.28
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 3 LAGDPGLPGLPPAPSRASAPG-----HLP-LASEPRRQGRKNKSGSAARPSEEEAP-LPA 55
+AG G PG+ +P + PG LP + E ++GR K G P + P LP
Sbjct: 1208 IAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPG 1267
Query: 56 P 56
P
Sbjct: 1268 P 1268
Score = 29.6 bits (65), Expect = 0.62
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 5 GDPGL-----PGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
GDPG+ PG P +PG L P QG + G+ P E P
Sbjct: 1040 GDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPP 1092
Score = 29.6 bits (65), Expect = 0.62
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 4 AGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
AG+PGLPG A GH + P G + +SG+ P +E P
Sbjct: 1260 AGEPGLPGPEGARGPPGFKGHTGDSGAP---GPRGESGAMGLPGQEGLP 1305
Score = 28.9 bits (63), Expect = 1.1
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G+ G+PG P + PG +P +G K G +P + P
Sbjct: 1372 GEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIP 1419
Score = 28.5 bits (62), Expect = 1.4
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 1 MALAGDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP 54
+ L G PG PG+P P +PG P + G +G + P P
Sbjct: 710 LGLQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGP 763
Score = 28.5 bits (62), Expect = 1.4
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP----LPAPIRQQ 60
GDPGLPG P R G P +G++ G+ AP P P
Sbjct: 874 GDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPP 933
Query: 61 ESSGLHRVRLPP 72
S G +R P
Sbjct: 934 GSVGAPGLRGTP 945
Score = 27.7 bits (60), Expect = 2.4
Identities = 15/48 (31%), Positives = 18/48 (37%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAP 52
G+ G PGLP P PG L G K + G+ P P
Sbjct: 871 GEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNP 918
Score = 27.7 bits (60), Expect = 2.4
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEEEAPLP-APIRQQESS 63
GD G PG+P +P PG + +A P G GS P P P + +
Sbjct: 1025 GDRGAPGIPGSPGSRGDPG-IGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAP 1083
Query: 64 GLHRVRLPP 72
G R PP
Sbjct: 1084 GNPGERGPP 1092
Score = 25.8 bits (55), Expect = 8.9
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 5 GDPGLPGLPPAPSRASAPGHLPLASEPRRQGRKNKSGSAARPSEE-EAPLP 54
G PG G P PG +P +G + G A RP E+ EA LP
Sbjct: 762 GPPGTKGEPGERGEDGLPG------KPGLRGEIGEQGLAGRPGEKGEAGLP 806
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,251,300
Number of Sequences: 37866
Number of extensions: 351122
Number of successful extensions: 5683
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 371
Number of HSP's that attempted gapping in prelim test: 2404
Number of HSP's gapped (non-prelim): 3160
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.