Guide to the Human Genome
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Name: LOC100133994 Sequence: fasta or formatted (180aa) NCBI GI: 239755340
Description:

PREDICTED: similar to hCG2040250

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         17           2
 C cysteine            2.2          4           1
 D aspartate           3.3          6           1
 E glutamate           5.0          9           2
 F phenylalanine       2.2          4           1
 G glycine             8.3         15           1
 H histidine           2.8          5           2
 I isoleucine          2.2          4           1
 K lysine              6.7         12           2
 L leucine             7.8         14           2
 M methionine          1.1          2           1
 N asparagine          1.1          2           1
 P proline            10.0         18           2
 Q glutamine           1.7          3           1
 R arginine           11.7         21           4
 S serine              5.6         10           2
 T threonine           9.4         17           2
 V valine              6.1         11           2
 W tryptophan          1.7          3           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040250 
GLUD2                 0.051   glutamate dehydrogenase 2 
GLUD1                 0.051   glutamate dehydrogenase 1 
LOC100128163          0.029   PREDICTED: hypothetical protein 
LOC100128163          0.029   PREDICTED: hypothetical protein 
LOC100128163          0.029   PREDICTED: hypothetical protein 
MAP7D1                0.017   MAP7 domain containing 1 
LOC729370             0.014   PREDICTED: hypothetical protein 
MAP2K7                0.014   mitogen-activated protein kinase kinase 7 
NCF2                  0.011   neutrophil cytosolic factor 2 
NCF2                  0.011   neutrophil cytosolic factor 2 
SETD1A                0.011   SET domain containing 1A 
LOC100292328          0.011   PREDICTED: hypothetical protein 
LOC100287025          0.011   PREDICTED: hypothetical protein 
LOC100287025          0.011   PREDICTED: hypothetical protein XP_002344222 
KIF21A                0.011   kinesin family member 21A 
LOC642838             0.009   PREDICTED: similar to hCG1742442 
SAMD11                0.009   sterile alpha motif domain containing 11 
LRRC56                0.009   leucine rich repeat containing 56 
PTPN21                0.009   protein tyrosine phosphatase, non-receptor type 21 ...
FOXO3                 0.009   forkhead box O3A 
FOXO3                 0.009   forkhead box O3A 
SYNPO                 0.009   synaptopodin isoform A 
CENPV                 0.009   proline rich 6 
NKTR                  0.009   natural killer-tumor recognition sequence 
RAPGEF1               0.006   guanine nucleotide-releasing factor 2 isoform b [Hom...
RAPGEF1               0.006   guanine nucleotide-releasing factor 2 isoform a [Hom...
LOC100133224          0.006   PREDICTED: similar to hCG2041320 
LOC100293496          0.006   PREDICTED: hypothetical protein 
LOC100133224          0.006   PREDICTED: similar to hCG2041320 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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