Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292721 Sequence: fasta or formatted (267aa) NCBI GI: 239755333
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         38           2
 C cysteine            1.1          3           1
 D aspartate           2.2          6           1
 E glutamate           4.5         12           1
 F phenylalanine       1.1          3           1
 G glycine            15.7         42           4
 H histidine           3.0          8           2
 I isoleucine          1.5          4           1
 K lysine              1.1          3           1
 L leucine            11.6         31           2
 M methionine          1.5          4           1
 N asparagine          0.7          2           1
 P proline             7.9         21           3
 Q glutamine           6.7         18           2
 R arginine            8.6         23           2
 S serine              6.7         18           1
 T threonine           4.1         11           1
 V valine              5.2         14           2
 W tryptophan          1.5          4           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128979          0.031   PREDICTED: hypothetical protein 
LOC100128979          0.031   PREDICTED: hypothetical protein 
LOC100128979          0.031   PREDICTED: hypothetical protein 
LOC100133756          0.027   PREDICTED: hypothetical protein, partial 
EGLN2                 0.021   EGL nine (C.elegans) homolog 2 
EGLN2                 0.021   EGL nine (C.elegans) homolog 2 
EVX2                  0.021   even-skipped homeobox 2 
LOC100291136          0.019   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.019   PREDICTED: hypothetical protein XP_002343480 
LOC100133305          0.019   PREDICTED: hypothetical protein 
LOC100133305          0.019   PREDICTED: hypothetical protein 
GNAS                  0.018   GNAS complex locus XLas 
CASKIN1               0.018   CASK interacting protein 1 
TAF10                 0.018   TBP-related factor 10 
IER5L                 0.018   immediate early response 5-like 
KIAA1522              0.018   hypothetical protein LOC57648 
SPRED3                0.016   sprouty-related, EVH1 domain containing 3 isoform a...
DOK7                  0.016   downstream of tyrosine kinase 7 
LOC100292865          0.016   PREDICTED: hypothetical protein 
TRIOBP                0.016   TRIO and F-actin binding protein isoform 6 
MLL                   0.014   myeloid/lymphoid or mixed-lineage leukemia protein [...
GJA3                  0.014   connexin 46 
PAWR                  0.014   PRKC, apoptosis, WT1, regulator 
DACH1                 0.014   dachshund homolog 1 isoform b 
DACH1                 0.014   dachshund homolog 1 isoform a 
DACH1                 0.014   dachshund homolog 1 isoform c 
LOC100133882          0.014   PREDICTED: hypothetical protein 
LOC100289993          0.014   PREDICTED: hypothetical protein XP_002348146 
LOC100288915          0.014   PREDICTED: hypothetical protein XP_002343820 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press