Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293975 Sequence: fasta or formatted (316aa) NCBI GI: 239756517
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         38           2
 C cysteine            3.8         12           2
 D aspartate           0.6          2           1
 E glutamate           3.5         11           1
 F phenylalanine       1.6          5           2
 G glycine            13.9         44           4
 H histidine           1.6          5           1
 I isoleucine          3.5         11           1
 K lysine              2.8          9           2
 L leucine             8.5         27           2
 M methionine          0.9          3           1
 N asparagine          1.9          6           2
 P proline             9.2         29           2
 Q glutamine           4.1         13           2
 R arginine           13.9         44           2
 S serine              8.9         28           3
 T threonine           3.5         11           1
 V valine              3.2         10           1
 W tryptophan          1.6          5           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290812          0.812   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.812   PREDICTED: hypothetical protein XP_002343496 
LOC100291634          0.042   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.042   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.042   PREDICTED: hypothetical protein 
PRR12                 0.038   proline rich 12 
WTIP                  0.038   Wilms tumor 1 interacting protein 
LOC100287063          0.035   PREDICTED: hypothetical protein 
AGAP2                 0.035   centaurin, gamma 1 isoform PIKE-L 
FLJ37078              0.035   hypothetical protein LOC222183 
LOC100133305          0.034   PREDICTED: hypothetical protein 
LOC100133305          0.034   PREDICTED: hypothetical protein 
KRTAP17-1             0.034   keratin associated protein 17-1 
LOC100290372          0.032   PREDICTED: hypothetical protein XP_002346788 
LOC100130360          0.032   PREDICTED: hypothetical protein 
LOC100288606          0.032   PREDICTED: hypothetical protein XP_002342652 
FLJ31945              0.032   PREDICTED: hypothetical protein 
FLJ31945              0.032   PREDICTED: hypothetical protein 
FLJ31945              0.032   PREDICTED: hypothetical protein 
LOC646509             0.032   PREDICTED: hypothetical protein 
POU4F1                0.032   POU domain, class 4, transcription factor 1 
C1orf77               0.032   small protein rich in arginine and glycine 
LOC100292745          0.032   PREDICTED: hypothetical protein 
LOC100290946          0.032   PREDICTED: hypothetical protein XP_002347121 
LOC100290074          0.032   PREDICTED: hypothetical protein XP_002346855 
LOC100130503          0.032   PREDICTED: hypothetical protein 
LOC100288840          0.032   PREDICTED: hypothetical protein XP_002344246 
LOC100287034          0.032   PREDICTED: hypothetical protein XP_002342693 
LOC729989             0.030   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press