Guide to the Human Genome
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Name: LOC100290812 Sequence: fasta or formatted (304aa) NCBI GI: 239751026
Description:

PREDICTED: hypothetical protein XP_002347678

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         40           2
 C cysteine            4.3         13           2
 D aspartate           0.3          1           1
 E glutamate           2.0          6           1
 F phenylalanine       1.6          5           2
 G glycine            13.5         41           4
 H histidine           3.9         12           1
 I isoleucine          2.6          8           1
 K lysine              2.3          7           2
 L leucine             8.2         25           2
 M methionine          0.7          2           1
 N asparagine          0.3          1           1
 P proline            10.5         32           2
 Q glutamine           2.6          8           1
 R arginine           15.1         46           2
 S serine              8.2         25           3
 T threonine           4.6         14           1
 V valine              3.6         11           1
 W tryptophan          2.0          6           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          1.000   PREDICTED: hypothetical protein XP_002343496 
LOC100293975          0.827   PREDICTED: hypothetical protein 
LOC100287063          0.042   PREDICTED: hypothetical protein 
LOC100133305          0.041   PREDICTED: hypothetical protein 
LOC100133305          0.041   PREDICTED: hypothetical protein 
PRR12                 0.041   proline rich 12 
LOC100288573          0.039   PREDICTED: hypothetical protein XP_002343799 
LOC100287499          0.037   PREDICTED: hypothetical protein 
LOC100287499          0.037   PREDICTED: hypothetical protein XP_002343643 
WTIP                  0.037   Wilms tumor 1 interacting protein 
AGAP2                 0.036   centaurin, gamma 1 isoform PIKE-L 
LOC100291634          0.036   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.036   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.036   PREDICTED: hypothetical protein 
POU3F3                0.034   POU class 3 homeobox 3 
LOC100130503          0.034   PREDICTED: hypothetical protein 
LOC646509             0.034   PREDICTED: hypothetical protein 
KRTAP17-1             0.034   keratin associated protein 17-1 
LOC729989             0.033   PREDICTED: hypothetical protein 
LOC100290372          0.033   PREDICTED: hypothetical protein XP_002346788 
LOC729989             0.033   PREDICTED: hypothetical protein 
LOC100130360          0.033   PREDICTED: hypothetical protein 
LOC100288606          0.033   PREDICTED: hypothetical protein XP_002342652 
LOC729989             0.033   PREDICTED: hypothetical protein 
POU4F1                0.033   POU domain, class 4, transcription factor 1 
LOC100290946          0.033   PREDICTED: hypothetical protein XP_002347121 
LOC388279             0.033   PREDICTED: hypothetical protein 
LOC100288840          0.033   PREDICTED: hypothetical protein XP_002344246 
LOC100287063          0.033   PREDICTED: hypothetical protein XP_002342368 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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