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Search of human proteins with 169206527
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169206527 PREDICTED: hypothetical protein [Homo sapiens]
(318 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206224 PREDICTED: hypothetical protein [Homo sapiens] 649 0.0
gi|169206527 PREDICTED: hypothetical protein [Homo sapiens] 649 0.0
gi|113424187 PREDICTED: hypothetical protein [Homo sapiens] 540 e-154
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 44 2e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 44 2e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 41 0.002
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 40 0.002
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 40 0.002
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 40 0.002
gi|48762934 alpha 2 type I collagen [Homo sapiens] 40 0.004
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 0.006
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 39 0.006
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 39 0.006
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 38 0.010
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 38 0.010
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 38 0.010
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 38 0.014
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 37 0.023
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 37 0.023
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.030
gi|169166115 PREDICTED: hypothetical protein [Homo sapiens] 36 0.040
gi|169165309 PREDICTED: hypothetical protein [Homo sapiens] 36 0.040
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 36 0.040
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 35 0.067
gi|4507741 twist [Homo sapiens] 35 0.088
gi|169211554 PREDICTED: hypothetical protein [Homo sapiens] 35 0.088
gi|169211959 PREDICTED: hypothetical protein [Homo sapiens] 35 0.088
gi|169211178 PREDICTED: hypothetical protein [Homo sapiens] 35 0.088
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 35 0.088
>gi|169206224 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 649 bits (1673), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MPILLKSLTSCRKRQSCGDDDSLTAIRVTVARKIPNRLSLACFRDSEALLSVSRSGVGRD 60
MPILLKSLTSCRKRQSCGDDDSLTAIRVTVARKIPNRLSLACFRDSEALLSVSRSGVGRD
Sbjct: 1 MPILLKSLTSCRKRQSCGDDDSLTAIRVTVARKIPNRLSLACFRDSEALLSVSRSGVGRD 60
Query: 61 ALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAAR 120
ALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAAR
Sbjct: 61 ALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAAR 120
Query: 121 LQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEA 180
LQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEA
Sbjct: 121 LQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEA 180
Query: 181 FAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQ 240
FAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQ
Sbjct: 181 FAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQ 240
Query: 241 PGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEG 300
PGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEG
Sbjct: 241 PGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEG 300
Query: 301 LEGVPGSCFPSCGTLPFP 318
LEGVPGSCFPSCGTLPFP
Sbjct: 301 LEGVPGSCFPSCGTLPFP 318
>gi|169206527 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 649 bits (1673), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MPILLKSLTSCRKRQSCGDDDSLTAIRVTVARKIPNRLSLACFRDSEALLSVSRSGVGRD 60
MPILLKSLTSCRKRQSCGDDDSLTAIRVTVARKIPNRLSLACFRDSEALLSVSRSGVGRD
Sbjct: 1 MPILLKSLTSCRKRQSCGDDDSLTAIRVTVARKIPNRLSLACFRDSEALLSVSRSGVGRD 60
Query: 61 ALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAAR 120
ALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAAR
Sbjct: 61 ALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAAR 120
Query: 121 LQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEA 180
LQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEA
Sbjct: 121 LQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEA 180
Query: 181 FAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQ 240
FAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQ
Sbjct: 181 FAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQ 240
Query: 241 PGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEG 300
PGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEG
Sbjct: 241 PGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEG 300
Query: 301 LEGVPGSCFPSCGTLPFP 318
LEGVPGSCFPSCGTLPFP
Sbjct: 301 LEGVPGSCFPSCGTLPFP 318
>gi|113424187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 540 bits (1392), Expect = e-154
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 58 GRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTE 117
GRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTE
Sbjct: 8 GRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTE 67
Query: 118 AARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQ 177
AARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQ
Sbjct: 68 AARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQ 127
Query: 178 IEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGP 237
IEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGP
Sbjct: 128 IEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGP 187
Query: 238 LGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFA 297
LGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFA
Sbjct: 188 LGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFA 247
Query: 298 SEGLEGVPGSCFPSCGTLPFP 318
SEGLEGVPGSCFPSCGTLPFP
Sbjct: 248 SEGLEGVPGSCFPSCGTLPFP 268
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 43.9 bits (102), Expect = 2e-04
Identities = 63/235 (26%), Positives = 82/235 (34%), Gaps = 26/235 (11%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRMGVTEAARLQAHTSHISLLSEGAKMH 138
P+ P GP G GA PQG +PG G G MG + K
Sbjct: 205 PMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAG 264
Query: 139 RWGSLPRNRGARRI-ATPGL-GARASRSPERVKRTTCPVLQIEAFAGRD--IGKKGGEGV 194
G P +GAR TPGL G + R + G D G+ G GV
Sbjct: 265 ERGP-PGPQGARGFPGTPGLPGVKGHR----------------GYPGLDGAKGEAGAPGV 307
Query: 195 QRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLGKR-KWQRLGPLGQPGPVGCACEVSS 252
+ + G+ E G G + G R + GP G PGPVG A
Sbjct: 308 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGF 367
Query: 253 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGS 307
GA P A + G P + +P PA + N ++G+ G GS
Sbjct: 368 PGA-PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGS 421
Score = 39.7 bits (91), Expect = 0.004
Identities = 64/248 (25%), Positives = 83/248 (33%), Gaps = 38/248 (15%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPG-----NQGHRCGRMGVTEAARL 121
PG+ + A P P G G+ GA P G PG +G + G GV A
Sbjct: 632 PGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGA 691
Query: 122 QAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAF 181
G + R P RG+ GA+ + P + T P
Sbjct: 692 PGLV--------GPRGER--GFPGERGSP-------GAQGLQGPRGLPGT--PGTDGPKG 732
Query: 182 AGRDIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRL-GPLG 239
A G G +G G E G + G K +R + GK + L GP+G
Sbjct: 733 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 792
Query: 240 QPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFAS 298
PGP G E G GPA + G AP G P P PA +
Sbjct: 793 PPGPAGANGEKGEVGPPGPAGSAGARG----APGERGETGP-------PGPAGFAGPPGA 841
Query: 299 EGLEGVPG 306
+G G G
Sbjct: 842 DGQPGAKG 849
Score = 37.7 bits (86), Expect = 0.014
Identities = 65/239 (27%), Positives = 78/239 (32%), Gaps = 26/239 (10%)
Query: 79 SDPLSPGGPAG-------KGGAGDPQGAG--ADPGNQGHRCGRMGVTEAARLQAHTSHIS 129
S P+ P GP G G AG P AG PG QG R G G ++ H +
Sbjct: 236 SGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR-GFPGTPGLPGVKGHRGYPG 294
Query: 130 LLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKK 189
L +GAK + G R + T P A G D G+
Sbjct: 295 L--DGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA-RGND-GQP 350
Query: 190 GGEGVQRKVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 248
G G VG A G G K + + G R G G PGP G +
Sbjct: 351 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR--GEPGTPGSPGPAGASG 408
Query: 249 EVSSSGAGPAAAVDRGGP-CTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
+ G P A G P AP PG P P P T +G G PG
Sbjct: 409 NPGTDGI-PGAKGSAGAPGIAGAPGFPGPRGP-------PGPQGATGPLGPKGQTGEPG 459
Score = 37.0 bits (84), Expect = 0.023
Identities = 72/253 (28%), Positives = 85/253 (33%), Gaps = 23/253 (9%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 126
PG + S A P GP G GA P GA PG G R G G
Sbjct: 863 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG-RVGPPGSNGNPGPPGPPG 921
Query: 127 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD- 185
+G K R S P R PGL A E+ + E G
Sbjct: 922 PSG--KDGPKGARGDSGPPGRAGE----PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 975
Query: 186 -IGKKGGEGVQRKVGTAEF----GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQ 240
G++G G+ + G F G S E GK+ S + +G GP G+
Sbjct: 976 LAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPP--GLTGPAGE 1033
Query: 241 PGPVGCACEVSSSGAGPAAAV--DRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFAS 298
PG G G AA V DRG T A APG P +P PA T
Sbjct: 1034 PGREGSPGADGPPGRDGAAGVKGDRGE--TGAVGAPGAPGPPG----SPGPAGPTGKQGD 1087
Query: 299 EGLEGVPGSCFPS 311
G G G PS
Sbjct: 1088 RGEAGAQGPMGPS 1100
Score = 33.5 bits (75), Expect = 0.26
Identities = 50/182 (27%), Positives = 60/182 (32%), Gaps = 48/182 (26%)
Query: 78 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 137
A P+ P GPAG G PQG D G G G G L+ H L
Sbjct: 1093 AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP-GERG------LKGHRGFTGL------- 1138
Query: 138 HRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRK 197
LP G + GA P + PV GK G G+
Sbjct: 1139 ---QGLPGPPG----PSGDQGASGPAGPSGPRGPPGPV--------GPSGKDGANGIPGP 1183
Query: 198 VG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSS-SGA 255
+G G S ETG GN GP G PGP G ++S+ +G
Sbjct: 1184 IGPPGPRGRSGETGP--------AGPPGN---------PGPPGPPGPPGPGIDMSAFAGL 1226
Query: 256 GP 257
GP
Sbjct: 1227 GP 1228
Score = 31.6 bits (70), Expect = 0.97
Identities = 55/228 (24%), Positives = 71/228 (31%), Gaps = 39/228 (17%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 126
PG++ A P P GP G G G PG G GR G + T
Sbjct: 1004 PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPP-GRDGAAGVKGDRGETG 1062
Query: 127 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDI 186
+ + GA P ++ GA+ P
Sbjct: 1063 AVG--APGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS-------------------- 1100
Query: 187 GKKGGEGVQRKVGT----AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRL------- 235
G G G+Q G E G E G K +R + +Q G Q
Sbjct: 1101 GPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPS 1160
Query: 236 GPLGQPGPVGCACEVSSSG----AGPAAAVDRGGPCTSAPAAPGNLSP 279
GP G PGPVG + + ++G GP R G T PGN P
Sbjct: 1161 GPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGE-TGPAGPPGNPGP 1207
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 43.9 bits (102), Expect = 2e-04
Identities = 63/235 (26%), Positives = 82/235 (34%), Gaps = 26/235 (11%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRMGVTEAARLQAHTSHISLLSEGAKMH 138
P+ P GP G GA PQG +PG G G MG + K
Sbjct: 136 PMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAG 195
Query: 139 RWGSLPRNRGARRI-ATPGL-GARASRSPERVKRTTCPVLQIEAFAGRD--IGKKGGEGV 194
G P +GAR TPGL G + R + G D G+ G GV
Sbjct: 196 ERGP-PGPQGARGFPGTPGLPGVKGHR----------------GYPGLDGAKGEAGAPGV 238
Query: 195 QRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLGKR-KWQRLGPLGQPGPVGCACEVSS 252
+ + G+ E G G + G R + GP G PGPVG A
Sbjct: 239 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGF 298
Query: 253 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGS 307
GA P A + G P + +P PA + N ++G+ G GS
Sbjct: 299 PGA-PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGS 352
Score = 39.7 bits (91), Expect = 0.004
Identities = 64/248 (25%), Positives = 83/248 (33%), Gaps = 38/248 (15%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPG-----NQGHRCGRMGVTEAARL 121
PG+ + A P P G G+ GA P G PG +G + G GV A
Sbjct: 563 PGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGA 622
Query: 122 QAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAF 181
G + R P RG+ GA+ + P + T P
Sbjct: 623 PGLV--------GPRGER--GFPGERGSP-------GAQGLQGPRGLPGT--PGTDGPKG 663
Query: 182 AGRDIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRL-GPLG 239
A G G +G G E G + G K +R + GK + L GP+G
Sbjct: 664 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 723
Query: 240 QPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFAS 298
PGP G E G GPA + G AP G P P PA +
Sbjct: 724 PPGPAGANGEKGEVGPPGPAGSAGARG----APGERGETGP-------PGPAGFAGPPGA 772
Query: 299 EGLEGVPG 306
+G G G
Sbjct: 773 DGQPGAKG 780
Score = 37.7 bits (86), Expect = 0.014
Identities = 65/239 (27%), Positives = 78/239 (32%), Gaps = 26/239 (10%)
Query: 79 SDPLSPGGPAG-------KGGAGDPQGAG--ADPGNQGHRCGRMGVTEAARLQAHTSHIS 129
S P+ P GP G G AG P AG PG QG R G G ++ H +
Sbjct: 167 SGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR-GFPGTPGLPGVKGHRGYPG 225
Query: 130 LLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKK 189
L +GAK + G R + T P A G D G+
Sbjct: 226 L--DGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA-RGND-GQP 281
Query: 190 GGEGVQRKVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 248
G G VG A G G K + + G R G G PGP G +
Sbjct: 282 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR--GEPGTPGSPGPAGASG 339
Query: 249 EVSSSGAGPAAAVDRGGP-CTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
+ G P A G P AP PG P P P T +G G PG
Sbjct: 340 NPGTDGI-PGAKGSAGAPGIAGAPGFPGPRGP-------PGPQGATGPLGPKGQTGEPG 390
Score = 37.0 bits (84), Expect = 0.023
Identities = 72/253 (28%), Positives = 85/253 (33%), Gaps = 23/253 (9%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 126
PG + S A P GP G GA P GA PG G R G G
Sbjct: 794 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG-RVGPPGSNGNPGPPGPPG 852
Query: 127 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD- 185
+G K R S P R PGL A E+ + E G
Sbjct: 853 PSG--KDGPKGARGDSGPPGRAGE----PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 906
Query: 186 -IGKKGGEGVQRKVGTAEF----GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQ 240
G++G G+ + G F G S E GK+ S + +G GP G+
Sbjct: 907 LAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPP--GLTGPAGE 964
Query: 241 PGPVGCACEVSSSGAGPAAAV--DRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFAS 298
PG G G AA V DRG T A APG P +P PA T
Sbjct: 965 PGREGSPGADGPPGRDGAAGVKGDRGE--TGAVGAPGAPGPPG----SPGPAGPTGKQGD 1018
Query: 299 EGLEGVPGSCFPS 311
G G G PS
Sbjct: 1019 RGEAGAQGPMGPS 1031
Score = 33.5 bits (75), Expect = 0.26
Identities = 50/182 (27%), Positives = 60/182 (32%), Gaps = 48/182 (26%)
Query: 78 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 137
A P+ P GPAG G PQG D G G G G L+ H L
Sbjct: 1024 AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP-GERG------LKGHRGFTGL------- 1069
Query: 138 HRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRK 197
LP G + GA P + PV GK G G+
Sbjct: 1070 ---QGLPGPPG----PSGDQGASGPAGPSGPRGPPGPV--------GPSGKDGANGIPGP 1114
Query: 198 VG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSS-SGA 255
+G G S ETG GN GP G PGP G ++S+ +G
Sbjct: 1115 IGPPGPRGRSGETGP--------AGPPGN---------PGPPGPPGPPGPGIDMSAFAGL 1157
Query: 256 GP 257
GP
Sbjct: 1158 GP 1159
Score = 31.6 bits (70), Expect = 0.97
Identities = 55/228 (24%), Positives = 71/228 (31%), Gaps = 39/228 (17%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 126
PG++ A P P GP G G G PG G GR G + T
Sbjct: 935 PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPP-GRDGAAGVKGDRGETG 993
Query: 127 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDI 186
+ + GA P ++ GA+ P
Sbjct: 994 AVG--APGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS-------------------- 1031
Query: 187 GKKGGEGVQRKVGT----AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRL------- 235
G G G+Q G E G E G K +R + +Q G Q
Sbjct: 1032 GPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPS 1091
Query: 236 GPLGQPGPVGCACEVSSSG----AGPAAAVDRGGPCTSAPAAPGNLSP 279
GP G PGPVG + + ++G GP R G T PGN P
Sbjct: 1092 GPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGE-TGPAGPPGNPGP 1138
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.8 bits (94), Expect = 0.002
Identities = 70/247 (28%), Positives = 89/247 (36%), Gaps = 41/247 (16%)
Query: 81 PLSPG--GPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMH 138
P PG GPAGK G QG G G R G G + Q E K
Sbjct: 601 PGPPGAVGPAGKDGEAGAQGPPGPAGPAGER-GEQGPAGSPGFQGLPGPAGPPGEAGKPG 659
Query: 139 RWGSLPRNRGARRIATPG-LGARASRSPERVKRTTCPV----------------LQIEAF 181
G +P + GA PG GAR R + P + +A
Sbjct: 660 EQG-VPGDLGA-----PGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAG 713
Query: 182 AGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRL-GPLGQ 240
A G +G G+Q G E G + G K +R + + GK + L GP+G
Sbjct: 714 APGAPGSQGAPGLQGMPG--ERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGP 771
Query: 241 PGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASE 299
PGP G + SG +GPA GP T A APG+ P PA ++
Sbjct: 772 PGPAGAPGDKGESGPSGPA------GP-TGARGAPGDRGEPG----PPGPAGFAGPPGAD 820
Query: 300 GLEGVPG 306
G G G
Sbjct: 821 GQPGAKG 827
Score = 40.8 bits (94), Expect = 0.002
Identities = 72/272 (26%), Positives = 89/272 (32%), Gaps = 51/272 (18%)
Query: 59 RDALALPRPGRKRRSQALKASD-------------PLSPGGPAG----KGGAGD-----P 96
R A LP P R K +D P+ P GPAG KG +G P
Sbjct: 733 RGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGP 792
Query: 97 QGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPG 156
GA PG++G G G A GAK P + GA+ A P
Sbjct: 793 TGARGAPGDRGEP-GPPGPAGFAGPPGADGQ-----PGAKGE-----PGDAGAKGDAGPP 841
Query: 157 LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEF-GISAETGKKINR 215
A + P + P G KG G G F G + G
Sbjct: 842 GPAGPAGPPGPIGNVGAP------------GAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
Query: 216 STSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPA-AP 274
+ GK + GP G+ GP G EV G P A ++G P PA AP
Sbjct: 890 GNAGPPGPPGPAGKEGGK--GPRGETGPAGRPGEVGPPGP-PGPAGEKGSPGADGPAGAP 946
Query: 275 GNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
G P Q + L G G+PG
Sbjct: 947 GTPGPQGIAGQRGV-VGLPGQRGERGFPGLPG 977
Score = 36.6 bits (83), Expect = 0.030
Identities = 58/214 (27%), Positives = 68/214 (31%), Gaps = 21/214 (9%)
Query: 78 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR-----CGRMGVTEAARLQAHTSHISLLS 132
AS P+ P GP G G G PG G R G G+ A L H
Sbjct: 213 ASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSG 272
Query: 133 -EGAKMHRWGSLPRNRGARRIATPG-LGARASRSPERVK-RTTCPVLQIEAFAGRDIGKK 189
+GAK + P+ +PG GA P + P A A + G
Sbjct: 273 LDGAKGDAGPAGPKGEP----GSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAT 328
Query: 190 GGEGVQRKVGTA-EFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 248
G G G A G G K + G R G G PGP G A
Sbjct: 329 GAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVR-----GEPGPPGPAGAAG 383
Query: 249 EVSSSGAG--PAAAVDRGGP-CTSAPAAPGNLSP 279
+ GA P A G P AP PG P
Sbjct: 384 PAGNPGADGQPGAKGANGAPGIAGAPGFPGARGP 417
Score = 35.0 bits (79), Expect = 0.088
Identities = 72/263 (27%), Positives = 86/263 (32%), Gaps = 41/263 (15%)
Query: 68 GRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRC--GRMGVTEAARLQAHT 125
G + A A+ P P GPAG G GA + G QG R G GV
Sbjct: 320 GARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPA 379
Query: 126 SHISLLSEGAKMHRWGSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQI-EAFAG 183
+ G+ N PG GAR P+ P E A
Sbjct: 380 GAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAP 439
Query: 184 RDIGKKGGEGVQRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPG 242
G G +G VG G + E GK+ R GP G PG
Sbjct: 440 GSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP-----------------GPTGLPG 482
Query: 243 PVGCACEVSSSG-------AGP-AAAVDRGGPCTSAPAAP-GNLSPDSRLLQNPLPAHLT 293
P G S G AGP A +RG P PA P G+ R + LP
Sbjct: 483 PPGERGGPGSRGFPGADGVAGPKGPAGERGSP---GPAGPKGSPGEAGRPGEAGLP---- 535
Query: 294 ANFASEGLEGVPGSCFPSCGTLP 316
++GL G PGS P T P
Sbjct: 536 ---GAKGLTGSPGSPGPDGKTGP 555
Score = 34.7 bits (78), Expect = 0.11
Identities = 67/243 (27%), Positives = 84/243 (34%), Gaps = 43/243 (17%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 126
PG++ S A P P GP G G G PG +G GR G
Sbjct: 982 PGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSP-GRDG------------ 1028
Query: 127 HISLLSEGAKMHRWGSLPRNRGARRIA--TPGLGARASRSPERVKRTTCPVLQIEAFAGR 184
S GAK R + P A PG A +S +R + T P A
Sbjct: 1029 -----SPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGE--TGP-----AGPAG 1076
Query: 185 DIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPV 244
+G G G G G ETG++ +R G R + G G PGP
Sbjct: 1077 PVGPVGARGPAGPQGPR--GDKGETGEQGDRGIK---------GHRGFS--GLQGPPGPP 1123
Query: 245 GCACEVSSSGA-GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEG 303
G E SGA GPA RG P ++ L+ + P P T + G G
Sbjct: 1124 GSPGEQGPSGASGPAG--PRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPG 1181
Query: 304 VPG 306
PG
Sbjct: 1182 PPG 1184
Score = 33.1 bits (74), Expect = 0.33
Identities = 60/217 (27%), Positives = 74/217 (34%), Gaps = 42/217 (19%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSE-GAKMHRWGS 142
P GPAG P+GA PGN G + G G A Q + E GA
Sbjct: 690 PPGPAG------PRGANGAPGNDGAK-GDAGAPGAPGSQGAPGLQGMPGERGA-----AG 737
Query: 143 LPRNRGARRIATPGLGARASRSPERVKRTTCPV-LQIEAFAGRDIGKKGGEGVQRKVGT- 200
LP +G R A P GA S + V+ T P+ A A D G+ G G G
Sbjct: 738 LPGPKGDRGDAGP-KGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGAR 796
Query: 201 --------------AEF----GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPG 242
A F G + G K + + G GP G PG
Sbjct: 797 GAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGP-----AGPAGPPG 851
Query: 243 PVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSP 279
P+G V + GA A T P A G + P
Sbjct: 852 PIG---NVGAPGAKGARGSAGPPGATGFPGAAGRVGP 885
Score = 31.2 bits (69), Expect = 1.3
Identities = 59/222 (26%), Positives = 72/222 (32%), Gaps = 21/222 (9%)
Query: 78 ASDPLSPGGPAGKGGAGDPQGAGADPGNQG--HRCGRMGVTEAARLQAHTSHISLLSEGA 135
A P GP G+ G+ GA G +G GR G A + +
Sbjct: 276 AKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG 335
Query: 136 KMHRWG--SLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEG 193
G P GA+ A P G R S P+ V+ P A A G G +G
Sbjct: 336 PTGPAGPPGFPGAVGAKGEAGP-QGPRGSEGPQGVRGEPGP--PGPAGAAGPAGNPGADG 392
Query: 194 VQ-RKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKR----------KWQRLGPLGQPG 242
K GI+ G R S Q G G + G G+PG
Sbjct: 393 QPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPG 452
Query: 243 PVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNL-SPDSR 282
PVG +G G A GP T P PG P SR
Sbjct: 453 PVGVQGPPGPAGEEGKRGARGEPGP-TGLPGPPGERGGPGSR 493
Score = 30.0 bits (66), Expect = 2.8
Identities = 64/257 (24%), Positives = 80/257 (31%), Gaps = 85/257 (33%)
Query: 64 LPRPGRKRR---SQALKASDPLS-PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAA 119
LP P +R S+ +D ++ P GPAG+ G+ P G PG G R G G+ A
Sbjct: 480 LPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAG-RPGEAGLPGAK 538
Query: 120 RLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIE 179
L G+ S P+ P
Sbjct: 539 GL-----------------------------------TGSPGSPGPDGKTGPPGP----- 558
Query: 180 AFAGRD--IGKKGGEGVQRKVGTAEF----GISAETGKKINRSTSYMQSHGNCLGKRKWQ 233
AG+D G G G + + G F G + E GK R
Sbjct: 559 --AGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVP--------------- 601
Query: 234 RLGPLGQPGPVGCACEVSSSG----AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 289
GP G GP G E + G AGPA GP S P G P P
Sbjct: 602 --GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGS-PGFQG----------LPGP 648
Query: 290 AHLTANFASEGLEGVPG 306
A G +GVPG
Sbjct: 649 AGPPGEAGKPGEQGVPG 665
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 40.4 bits (93), Expect = 0.002
Identities = 61/220 (27%), Positives = 73/220 (33%), Gaps = 32/220 (14%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 140
P GP G G P GA G QG + G G A T + K
Sbjct: 1361 PSGEAGPPGPPGKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGK---- 1415
Query: 141 GSLPRNRGARRIATP----GLGARASRS--PERVKRTTCPVLQIEAFAGRDIGKKGGEGV 194
P G R I P GL A + P + P L+ D G KG +G
Sbjct: 1416 ---PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK------GDPGSKGEKGH 1466
Query: 195 QRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ-RLGPLGQPGPVGCACEVSSS 253
+G G E G+K +R Q G GPLG PGP G
Sbjct: 1467 PGLIGL--IGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1524
Query: 254 G----AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 289
G GPA G P PG+ P ++Q PLP
Sbjct: 1525 GNKGSTGPAGQKGDSG----LPGPPGSPGPPGEVIQ-PLP 1559
Score = 33.9 bits (76), Expect = 0.20
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 236 GPLGQPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA 294
GP G PGPVG E S+G AGP R GP A +P + Q P
Sbjct: 1060 GPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AG 1114
Query: 295 NFASEGLEGVPGSCFPS 311
+G G+PG P+
Sbjct: 1115 RDGVQGPVGLPGPAGPA 1131
Score = 33.5 bits (75), Expect = 0.26
Identities = 60/257 (23%), Positives = 81/257 (31%), Gaps = 17/257 (6%)
Query: 56 GVGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRM 113
G D + PG+K + P P G G GA G +PG +G + G+
Sbjct: 1135 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK 1194
Query: 114 GVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGL-GARASRSPERVKRTT 172
G A I L G N + PG G R + P
Sbjct: 1195 GDEGARGFPGPPGPIGLQGLPGPP---GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQ 1251
Query: 173 CPVLQIEAFAGRDIGKKGGEGVQRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLG-KR 230
P + + G +G+KG G G E G+ G++ + + G K
Sbjct: 1252 GPPGSVGSVGG--VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG 1309
Query: 231 KWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPA 290
GP G PGPVG + G A D G PG P P P+
Sbjct: 1310 PPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-------PGPS 1362
Query: 291 HLTANFASEGLEGVPGS 307
G G PG+
Sbjct: 1363 GEAGPPGPPGKRGPPGA 1379
Score = 31.6 bits (70), Expect = 0.97
Identities = 61/247 (24%), Positives = 83/247 (33%), Gaps = 24/247 (9%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 126
PG++ +S A L P GP G G P+G G +G + G G
Sbjct: 747 PGKEGQSGEKGA---LGPPGPQGPIGYPGPRGVKGADGVRGLK-GSKGEKGEDGFPGFKG 802
Query: 127 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSP--ERVKRTTCPVLQIEAFAGR 184
+ L + ++ + G PR G P + ++ V + + GR
Sbjct: 803 DMGLKGDRGEVGQIG--PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 860
Query: 185 DIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGP 243
G KG G G E G GK R G R GP G+PGP
Sbjct: 861 Q-GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGAR-----GPTGKPGP 914
Query: 244 VGCACEVSSSGAGPAAAV-DRGGPCTSAPAA-PGNLSPDSRLLQNPLPAH--LTANFASE 299
G +S G GP +RG P PG P ++ LP H +
Sbjct: 915 KG-----TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ 969
Query: 300 GLEGVPG 306
G G PG
Sbjct: 970 GKTGPPG 976
Score = 30.4 bits (67), Expect = 2.2
Identities = 68/267 (25%), Positives = 83/267 (31%), Gaps = 32/267 (11%)
Query: 58 GRDALALPRPGRKRRSQALKASDPLSPG---GPAGKGGAGDPQGAGADPGNQGHRCGRMG 114
G+D L PG++ + + P PG GP G G P G PG G G G
Sbjct: 952 GKDGLP-GHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPP-GEQG 1009
Query: 115 VTEAARLQAHTSHISLLSEGAKMHRWG--SLPRNRGARRI-ATPGL-GARASRSPERVKR 170
+ AA + K G P RG PGL G + P
Sbjct: 1010 LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP--GP 1067
Query: 171 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTA-EFGISAETGKKINRSTSYMQSHGNCLGK 229
P + A IG G G Q G A E G E G + +Q G
Sbjct: 1068 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGP 1127
Query: 230 RKWQRLGPLGQPGPVGCACEVSSSGA----------GPAAAVDRGGPCTSAPAAPGNLSP 279
GP G PG G E+ G GP GP + A G+ P
Sbjct: 1128 -----AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEP 1182
Query: 280 DSRLLQNPLPAHLTANFASEGLEGVPG 306
R Q + EG G PG
Sbjct: 1183 GPRGQQG-----MFGQKGDEGARGFPG 1204
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 40.4 bits (93), Expect = 0.002
Identities = 61/220 (27%), Positives = 73/220 (33%), Gaps = 32/220 (14%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 140
P GP G G P GA G QG + G G A T + K
Sbjct: 1310 PSGEAGPPGPPGKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGK---- 1364
Query: 141 GSLPRNRGARRIATP----GLGARASRS--PERVKRTTCPVLQIEAFAGRDIGKKGGEGV 194
P G R I P GL A + P + P L+ D G KG +G
Sbjct: 1365 ---PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK------GDPGSKGEKGH 1415
Query: 195 QRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ-RLGPLGQPGPVGCACEVSSS 253
+G G E G+K +R Q G GPLG PGP G
Sbjct: 1416 PGLIGL--IGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1473
Query: 254 G----AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 289
G GPA G P PG+ P ++Q PLP
Sbjct: 1474 GNKGSTGPAGQKGDSG----LPGPPGSPGPPGEVIQ-PLP 1508
Score = 33.9 bits (76), Expect = 0.20
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 236 GPLGQPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA 294
GP G PGPVG E S+G AGP R GP A +P + Q P
Sbjct: 1009 GPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AG 1063
Query: 295 NFASEGLEGVPGSCFPS 311
+G G+PG P+
Sbjct: 1064 RDGVQGPVGLPGPAGPA 1080
Score = 33.5 bits (75), Expect = 0.26
Identities = 60/257 (23%), Positives = 81/257 (31%), Gaps = 17/257 (6%)
Query: 56 GVGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRM 113
G D + PG+K + P P G G GA G +PG +G + G+
Sbjct: 1084 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK 1143
Query: 114 GVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGL-GARASRSPERVKRTT 172
G A I L G N + PG G R + P
Sbjct: 1144 GDEGARGFPGPPGPIGLQGLPGPP---GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQ 1200
Query: 173 CPVLQIEAFAGRDIGKKGGEGVQRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLG-KR 230
P + + G +G+KG G G E G+ G++ + + G K
Sbjct: 1201 GPPGSVGSVGG--VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG 1258
Query: 231 KWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPA 290
GP G PGPVG + G A D G PG P P P+
Sbjct: 1259 PPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-------PGPS 1311
Query: 291 HLTANFASEGLEGVPGS 307
G G PG+
Sbjct: 1312 GEAGPPGPPGKRGPPGA 1328
Score = 31.6 bits (70), Expect = 0.97
Identities = 61/247 (24%), Positives = 83/247 (33%), Gaps = 24/247 (9%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 126
PG++ +S A L P GP G G P+G G +G + G G
Sbjct: 696 PGKEGQSGEKGA---LGPPGPQGPIGYPGPRGVKGADGVRGLK-GSKGEKGEDGFPGFKG 751
Query: 127 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSP--ERVKRTTCPVLQIEAFAGR 184
+ L + ++ + G PR G P + ++ V + + GR
Sbjct: 752 DMGLKGDRGEVGQIG--PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 809
Query: 185 DIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGP 243
G KG G G E G GK R G R GP G+PGP
Sbjct: 810 Q-GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGAR-----GPTGKPGP 863
Query: 244 VGCACEVSSSGAGPAAAV-DRGGPCTSAPAA-PGNLSPDSRLLQNPLPAH--LTANFASE 299
G +S G GP +RG P PG P ++ LP H +
Sbjct: 864 KG-----TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ 918
Query: 300 GLEGVPG 306
G G PG
Sbjct: 919 GKTGPPG 925
Score = 30.4 bits (67), Expect = 2.2
Identities = 68/267 (25%), Positives = 83/267 (31%), Gaps = 32/267 (11%)
Query: 58 GRDALALPRPGRKRRSQALKASDPLSPG---GPAGKGGAGDPQGAGADPGNQGHRCGRMG 114
G+D L PG++ + + P PG GP G G P G PG G G G
Sbjct: 901 GKDGLP-GHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPP-GEQG 958
Query: 115 VTEAARLQAHTSHISLLSEGAKMHRWG--SLPRNRGARRI-ATPGL-GARASRSPERVKR 170
+ AA + K G P RG PGL G + P
Sbjct: 959 LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP--GP 1016
Query: 171 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTA-EFGISAETGKKINRSTSYMQSHGNCLGK 229
P + A IG G G Q G A E G E G + +Q G
Sbjct: 1017 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGP 1076
Query: 230 RKWQRLGPLGQPGPVGCACEVSSSGA----------GPAAAVDRGGPCTSAPAAPGNLSP 279
GP G PG G E+ G GP GP + A G+ P
Sbjct: 1077 -----AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEP 1131
Query: 280 DSRLLQNPLPAHLTANFASEGLEGVPG 306
R Q + EG G PG
Sbjct: 1132 GPRGQQG-----MFGQKGDEGARGFPG 1153
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 40.4 bits (93), Expect = 0.002
Identities = 61/220 (27%), Positives = 73/220 (33%), Gaps = 32/220 (14%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 140
P GP G G P GA G QG + G G A T + K
Sbjct: 1349 PSGEAGPPGPPGKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGK---- 1403
Query: 141 GSLPRNRGARRIATP----GLGARASRS--PERVKRTTCPVLQIEAFAGRDIGKKGGEGV 194
P G R I P GL A + P + P L+ D G KG +G
Sbjct: 1404 ---PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK------GDPGSKGEKGH 1454
Query: 195 QRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ-RLGPLGQPGPVGCACEVSSS 253
+G G E G+K +R Q G GPLG PGP G
Sbjct: 1455 PGLIGL--IGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1512
Query: 254 G----AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 289
G GPA G P PG+ P ++Q PLP
Sbjct: 1513 GNKGSTGPAGQKGDSG----LPGPPGSPGPPGEVIQ-PLP 1547
Score = 33.9 bits (76), Expect = 0.20
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 236 GPLGQPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA 294
GP G PGPVG E S+G AGP R GP A +P + Q P
Sbjct: 1048 GPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AG 1102
Query: 295 NFASEGLEGVPGSCFPS 311
+G G+PG P+
Sbjct: 1103 RDGVQGPVGLPGPAGPA 1119
Score = 33.5 bits (75), Expect = 0.26
Identities = 60/257 (23%), Positives = 81/257 (31%), Gaps = 17/257 (6%)
Query: 56 GVGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRM 113
G D + PG+K + P P G G GA G +PG +G + G+
Sbjct: 1123 GEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQK 1182
Query: 114 GVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGL-GARASRSPERVKRTT 172
G A I L G N + PG G R + P
Sbjct: 1183 GDEGARGFPGPPGPIGLQGLPGPP---GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQ 1239
Query: 173 CPVLQIEAFAGRDIGKKGGEGVQRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLG-KR 230
P + + G +G+KG G G E G+ G++ + + G K
Sbjct: 1240 GPPGSVGSVGG--VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG 1297
Query: 231 KWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPA 290
GP G PGPVG + G A D G PG P P P+
Sbjct: 1298 PPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-------PGPS 1350
Query: 291 HLTANFASEGLEGVPGS 307
G G PG+
Sbjct: 1351 GEAGPPGPPGKRGPPGA 1367
Score = 31.6 bits (70), Expect = 0.97
Identities = 61/247 (24%), Positives = 83/247 (33%), Gaps = 24/247 (9%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 126
PG++ +S A L P GP G G P+G G +G + G G
Sbjct: 735 PGKEGQSGEKGA---LGPPGPQGPIGYPGPRGVKGADGVRGLK-GSKGEKGEDGFPGFKG 790
Query: 127 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSP--ERVKRTTCPVLQIEAFAGR 184
+ L + ++ + G PR G P + ++ V + + GR
Sbjct: 791 DMGLKGDRGEVGQIG--PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 848
Query: 185 DIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGP 243
G KG G G E G GK R G R GP G+PGP
Sbjct: 849 Q-GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGAR-----GPTGKPGP 902
Query: 244 VGCACEVSSSGAGPAAAV-DRGGPCTSAPAA-PGNLSPDSRLLQNPLPAH--LTANFASE 299
G +S G GP +RG P PG P ++ LP H +
Sbjct: 903 KG-----TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ 957
Query: 300 GLEGVPG 306
G G PG
Sbjct: 958 GKTGPPG 964
Score = 30.4 bits (67), Expect = 2.2
Identities = 68/267 (25%), Positives = 83/267 (31%), Gaps = 32/267 (11%)
Query: 58 GRDALALPRPGRKRRSQALKASDPLSPG---GPAGKGGAGDPQGAGADPGNQGHRCGRMG 114
G+D L PG++ + + P PG GP G G P G PG G G G
Sbjct: 940 GKDGLP-GHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPP-GEQG 997
Query: 115 VTEAARLQAHTSHISLLSEGAKMHRWG--SLPRNRGARRI-ATPGL-GARASRSPERVKR 170
+ AA + K G P RG PGL G + P
Sbjct: 998 LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP--GP 1055
Query: 171 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTA-EFGISAETGKKINRSTSYMQSHGNCLGK 229
P + A IG G G Q G A E G E G + +Q G
Sbjct: 1056 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGP 1115
Query: 230 RKWQRLGPLGQPGPVGCACEVSSSGA----------GPAAAVDRGGPCTSAPAAPGNLSP 279
GP G PG G E+ G GP GP + A G+ P
Sbjct: 1116 -----AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEP 1170
Query: 280 DSRLLQNPLPAHLTANFASEGLEGVPG 306
R Q + EG G PG
Sbjct: 1171 GPRGQQG-----MFGQKGDEGARGFPG 1192
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 39.7 bits (91), Expect = 0.004
Identities = 64/247 (25%), Positives = 85/247 (34%), Gaps = 43/247 (17%)
Query: 82 LSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWG 141
+ P GP G GA PQG G G G+ G A K R G
Sbjct: 96 MGPRGPPGAAGAPGPQGFQGPAGEPGEP-GQTGPAGARGPAGPPGKAGEDGHPGKPGRPG 154
Query: 142 --SLPRNRGARRI-ATPGL----GARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGV 194
+ +GAR TPGL G R + +K G+ G GV
Sbjct: 155 ERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLK-----------------GQPGAPGV 197
Query: 195 QRKVGT-AEFGISAETGKK-INRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSS 252
+ + G E G +TG + + + + G + +GP+G GP+G A
Sbjct: 198 KGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGF 257
Query: 253 SGA----GPAAAVDRGGPCTSA--------PAAPGNLSPDSRLLQNPLPAHLTANFASEG 300
GA G AV GP A P G + P NP LT + G
Sbjct: 258 PGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPG----NPGANGLTGAKGAAG 313
Query: 301 LEGVPGS 307
L GV G+
Sbjct: 314 LPGVAGA 320
Score = 38.9 bits (89), Expect = 0.006
Identities = 60/243 (24%), Positives = 75/243 (30%), Gaps = 24/243 (9%)
Query: 66 RPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHT 125
R G + A+ A P G G+ GA P G G+ G R G +G
Sbjct: 671 RDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGER-GEVGPAGPNGFAGPA 729
Query: 126 SHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD 185
GAK R P+ T +GA P
Sbjct: 730 GAAG--QPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPP---------------- 771
Query: 186 IGKKGGEGVQRKVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPV 244
G G G G F G + TG S GK + GP G GPV
Sbjct: 772 -GPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLR--GPRGDQGPV 828
Query: 245 GCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGV 304
G EV + G P A ++G + A P LL P L + GL GV
Sbjct: 829 GRTGEVGAVGP-PGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGV 887
Query: 305 PGS 307
G+
Sbjct: 888 AGA 890
Score = 32.7 bits (73), Expect = 0.44
Identities = 59/250 (23%), Positives = 78/250 (31%), Gaps = 32/250 (12%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 126
PG K A+ + P P GP G+ G G PGN G G G AA L
Sbjct: 261 PGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGAN-GLTGAKGAAGLPGVAG 319
Query: 127 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDI 186
L G+ + PG S + E +
Sbjct: 320 APGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKG----------EPGSAGPQ 369
Query: 187 GKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVG 245
G G G + K G E G + G R + + G R G +G PG G
Sbjct: 370 GPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADG-----RAGVMGPPGSRG 424
Query: 246 CACEVSSSG----AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGL 301
+ G AG GP P +PGN+ P + LP G+
Sbjct: 425 ASGPAGVRGPNGDAGRPGEPGLMGP-RGLPGSPGNIGPAGKEGPVGLP----------GI 473
Query: 302 EGVPGSCFPS 311
+G PG P+
Sbjct: 474 DGRPGPIGPA 483
Score = 30.4 bits (67), Expect = 2.2
Identities = 57/248 (22%), Positives = 79/248 (31%), Gaps = 57/248 (22%)
Query: 59 RDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEA 118
R + P P R S + P GPAG G+ P G PG +G G +G
Sbjct: 222 RGRVGAPGPAGARGSDG-----SVGPVGPAGPIGSAGPPGFPGAPGPKG-EIGAVGNAGP 275
Query: 119 ARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQI 178
A + L + P N GA + GA+ + +
Sbjct: 276 AGPAGPRGEVGLPGLSGPV----GPPGNPGANGLT----GAKGAAG-------------L 314
Query: 179 EAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPL 238
AG G G G+ VG A TG + G +
Sbjct: 315 PGVAGAP-GLPGPRGIPGPVGAA-----GATGAR-----------------------GLV 345
Query: 239 GQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFAS 298
G+PGP G E + G P +A +G P S + ++ P P L + S
Sbjct: 346 GEPGPAGSKGESGNKGE-PGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGS 404
Query: 299 EGLEGVPG 306
GL G G
Sbjct: 405 RGLPGADG 412
Score = 30.0 bits (66), Expect = 2.8
Identities = 55/219 (25%), Positives = 69/219 (31%), Gaps = 35/219 (15%)
Query: 58 GRDALALPR--PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGV 115
G L PR PG P+ G G+ G P GA +PGN G G G
Sbjct: 442 GEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFP-GPKGP 500
Query: 116 TEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATP-----GLGARASRSPERVKR 170
T H L G N GA+ P G G + P +
Sbjct: 501 TGDPGKNGDKGHAGLAGARGAPGPDG----NNGAQGPPGPQGVQGGKGEQGPPGPPGFQG 556
Query: 171 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINR---STSYMQSHGNCL 227
P + ++GK G G+ EFG+ G + R S +
Sbjct: 557 LPGP-----SGPAGEVGKPGERGLH-----GEFGLPGPAGPRGERGPPGESGAAGPTGPI 606
Query: 228 GKRKWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGP 266
G R GP G PGP G + G AV GP
Sbjct: 607 GSR-----GPSGPPGPDG-----NKGEPGVVGAVGTAGP 635
Score = 28.9 bits (63), Expect = 6.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 79 SDPLSPGGPAGKGGAGDPQGAGADPGNQGHR 109
S P+ P G G G PQG D G G +
Sbjct: 984 SGPVGPAGAVGPRGPSGPQGIRGDKGEPGEK 1014
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 38.9 bits (89), Expect = 0.006
Identities = 66/251 (26%), Positives = 88/251 (35%), Gaps = 40/251 (15%)
Query: 84 PGGPAG-------KGGAGDP--QGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEG 134
P GPAG +GGAG+P GA +PG +G R G G+ + E
Sbjct: 415 PPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGER-GEAGIPGVPGAKGEDGKDGSPGEP 473
Query: 135 AKMHRWGSLPRNRGARRIATPGL-------GARASRSPERVKRTTCPVLQIEAFA--GRD 185
LP G R PG G + P + P A GRD
Sbjct: 474 GA----NGLPGAAGER--GAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRD 527
Query: 186 IGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVG 245
G GG G++ G+ G GK + G GP GQPG +G
Sbjct: 528 -GVPGGPGMRGMPGSP--GGPGSDGKPGPPGSQGESGRPGPPGPS-----GPRGQPGVMG 579
Query: 246 CACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHL------TANFASE 299
+ GA P +RGGP P P + ++ P P T +
Sbjct: 580 FPGPKGNDGA-PGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQ 638
Query: 300 GLEGVPGSCFP 310
GL+G+PG+ P
Sbjct: 639 GLQGLPGTGGP 649
Score = 35.8 bits (81), Expect = 0.052
Identities = 73/258 (28%), Positives = 86/258 (33%), Gaps = 53/258 (20%)
Query: 78 ASDPLSPG-----GPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLS 132
A P SPG GPAG G+ G +PG QGH G G + S
Sbjct: 341 AGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGH-AGAQGPPGPPGING--------S 391
Query: 133 EGAKMHRW-GSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQIEAFAGRDIGKKG 190
G K +P PGL GAR P P L+ A G KG
Sbjct: 392 PGGKGEMGPAGIP--------GAPGLMGARGPPGP--AGANGAPGLRGGAGEPGKNGAKG 441
Query: 191 GEGVQRKVGTAEF----GISAETGKKINRSTSYMQSHGNCLGKRKWQRL----GPLGQPG 242
G + + G A G E GK + G+R GP G PG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 243 PVGCACEVSSSG-AGPAAAVDR-------GGP-CTSAPAAPGNLSPDSRLLQNPLPAHLT 293
G A E + G AGP A GGP P +PG D + P P
Sbjct: 502 EKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGK----PGPP--- 554
Query: 294 ANFASEGLEGVPGSCFPS 311
S+G G PG PS
Sbjct: 555 ---GSQGESGRPGPPGPS 569
Score = 35.0 bits (79), Expect = 0.088
Identities = 68/246 (27%), Positives = 87/246 (35%), Gaps = 50/246 (20%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 140
P SPG KG AG P G PG QG G G A +
Sbjct: 914 PGSPGVSGPKGDAGQP-GEKGSPGAQGPP-GAPGPLGIAGIT------------------ 953
Query: 141 GSLPRNRGARRIA-TPGL-GARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKV 198
GAR +A PG+ G R S P+ VK + + A G++G G Q
Sbjct: 954 -------GARGLAGPPGMPGPRGSPGPQGVKGESG-----KPGANGLSGERGPPGPQGLP 1001
Query: 199 GTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ----------RLGPLGQPGPVGCAC 248
G A G + E G+ N + + G + + G G PGPVG A
Sbjct: 1002 GLA--GTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAG 1059
Query: 249 EVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSP--DSRLLQNPLPAHLTANFASEGLEGVP 305
+ G +GPA GP S APG P D A + + G G P
Sbjct: 1060 KSGDRGESGPAGPAGAPGPAGSR-GAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAP 1118
Query: 306 GSCFPS 311
GS P+
Sbjct: 1119 GSPGPA 1124
Score = 31.6 bits (70), Expect = 0.97
Identities = 61/231 (26%), Positives = 72/231 (31%), Gaps = 33/231 (14%)
Query: 84 PGGPAGKGGAGDP--QGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWG 141
PG GKG AG P GA PG QG R G+ +G K G
Sbjct: 701 PGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPG------------PKGDKGEPGG 748
Query: 142 ----SLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRK 197
+P G R P + P P L A G++G G
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGP 808
Query: 198 VG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQR-LGPLGQPGPVGCACEVSSSGA 255
G G + E G K R + G G GP G PGP G E S G
Sbjct: 809 AGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGG 868
Query: 256 GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
AA P + GN P P P+ S G +G PG
Sbjct: 869 PGAAGFPGARGLPGPPGSNGNPGP-------PGPS------GSPGKDGPPG 906
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/79 (30%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 236 GPLGQPGPVGCACEVSSSGA----GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAH 291
GP G PGP G G G + G C S P P N SP
Sbjct: 106 GPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYD------ 159
Query: 292 LTANFASEGLEGVPGSCFP 310
+ + A GL G PG P
Sbjct: 160 VKSGVAVGGLAGYPGPAGP 178
Score = 31.2 bits (69), Expect = 1.3
Identities = 52/190 (27%), Positives = 59/190 (31%), Gaps = 35/190 (18%)
Query: 81 PLSPGGPAGKG---GAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 137
P P GPAGK G P G PG G R G G + T + G K
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSR-GAPGPQGPRGDKGETGERG--AAGIKG 1107
Query: 138 HRWGSLPRNRGARRIATPG--LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQ 195
HR P N GA P GA S P + P G G +G
Sbjct: 1108 HR--GFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGP-----------SGPPGKDGTS 1154
Query: 196 RKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGA 255
G G G + R + H + GP G PG G C G
Sbjct: 1155 GHPG--PIGPPGPRGNRGERGSEGSPGHPG--------QPGPPGPPGAPGPCC----GGV 1200
Query: 256 GPAAAVDRGG 265
G AA GG
Sbjct: 1201 GAAAIAGIGG 1210
Score = 29.6 bits (65), Expect = 3.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 236 GPLGQPGPVGCACEVSSSGA----GPAAAVDRGGPCTSAPAAPGNLSP 279
GP G PGP G + S G+ GP + GP + P PG + P
Sbjct: 177 GPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGP-SGPPGPPGAIGP 223
Score = 28.5 bits (62), Expect = 8.2
Identities = 66/257 (25%), Positives = 84/257 (32%), Gaps = 46/257 (17%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGH-----RCGRMGVTEAARLQAHTSHISLLSEGAKMH 138
PG P KG AG P PG +GH R G G T A L+ L E
Sbjct: 245 PGPPGIKGPAGIP----GFPGMKGHRGFDGRNGEKGETGAPGLKGEN---GLPGENGAPG 297
Query: 139 RWGSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQIEAFAG-----RDIGKKGGE 192
G PR R PGL GA +R + + + + G G G
Sbjct: 298 PMG--PRGAPGER-GRPGLPGAAGARGNDGARGS-------DGQPGPPGPPGTAGFPGSP 347
Query: 193 GVQRKVGTAEFGISAETGKKINRSTSYMQSH-------------GNCLGKRKWQRLGPLG 239
G + +VG A G G R Q H G+ GK + G G
Sbjct: 348 GAKGEVGPA--GSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405
Query: 240 QPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASE 299
PG +G +GA A + G A G P + +P A +
Sbjct: 406 APGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAK-GED 464
Query: 300 GLEGVPGSCFPSCGTLP 316
G +G PG P LP
Sbjct: 465 GKDGSPGE--PGANGLP 479
Score = 28.5 bits (62), Expect = 8.2
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 53 SRSGVGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGR 112
S G G D P PG + S P P G G G P+G PG G R G
Sbjct: 541 SPGGPGSDGKPGP-PGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP 599
Query: 113 MG 114
G
Sbjct: 600 GG 601
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 38.9 bits (89), Expect = 0.006
Identities = 38/116 (32%), Positives = 46/116 (39%), Gaps = 24/116 (20%)
Query: 61 ALALPRPGRKRR------SQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMG 114
A LP+P R+RR S+ + S P+ P G GGAG GAGA +
Sbjct: 191 AWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAG--------AQRS 242
Query: 115 VTEAARLQAHTSHISLLSE---GAKMHR-------WGSLPRNRGARRIATPGLGAR 160
EAA + L+SE G K R WG L G R A G G R
Sbjct: 243 AAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKR 298
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 38.9 bits (89), Expect = 0.006
Identities = 61/235 (25%), Positives = 73/235 (31%), Gaps = 25/235 (10%)
Query: 80 DPLSPGGP--AGKGGAGDPQGAGADPGNQG-HRCGRMGVTEAARLQAHTSHISLLSEGAK 136
DP PG P AG G P G +PG G G G T A L L+
Sbjct: 2184 DPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGS 2243
Query: 137 MHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQR 196
LP G PG R S + R + V G +G KG G
Sbjct: 2244 ----PGLPGQVG--ETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPG-PVGPKGEPGPTG 2296
Query: 197 KVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSG-- 254
G A G+ G+K G K GP G+ G G A E G
Sbjct: 2297 APGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGED 2356
Query: 255 ---AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
P +G P P +PG P P + + GL G PG
Sbjct: 2357 GQKGAPGPKGFKGDPGVGVPGSPG----------PPGPPGVKGDLGLPGLPGAPG 2401
Score = 38.1 bits (87), Expect = 0.010
Identities = 67/238 (28%), Positives = 80/238 (33%), Gaps = 36/238 (15%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQG-----HRCGRMGVTEAARLQAHTSHISLLSEGAKMH 138
PG G+ G P G +PG G R G GV EA R E +
Sbjct: 2017 PGLALGERGPPGPSGLAGEPGKPGIPGLPGRAG--GVGEAGR-PGERGERGEKGERGEQG 2073
Query: 139 RWG--SLPRNRGAR-------RIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKK 189
R G LP G + PG G + P +K + E + D G K
Sbjct: 2074 RDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGA-----KGEPGSNGDQGPK 2128
Query: 190 GGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACE 249
G GV G + G G+ N + GK Q GP G PGPVG +
Sbjct: 2129 GDRGVPGIKG--DRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQ--GPRGPPGPVGGHGD 2184
Query: 250 VSSSGA-GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
GA G A GP + PG P R L P A GL G PG
Sbjct: 2185 PGPPGAPGLAGPAGPQGP-SGLKGEPGETGPPGRGLTGPTGA--------VGLPGPPG 2233
Score = 36.2 bits (82), Expect = 0.040
Identities = 66/221 (29%), Positives = 77/221 (34%), Gaps = 29/221 (13%)
Query: 54 RSGVGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAG--ADPGNQGHRCG 111
R G D+ A R GR A L P GP G G P G G PG G + G
Sbjct: 1855 RKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPK-G 1913
Query: 112 RMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRS-PERVKR 170
G T + Q L E GS+P R + T G+ A A R E
Sbjct: 1914 DRGETGSKGEQGLPGERGLRGEP------GSVP--NVDRLLETAGIKASALREIVETWDE 1965
Query: 171 TTCPVLQIEAFAGRDIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQS-HGNCLG 228
++ L + R G KG G Q G G E G K +R Q G LG
Sbjct: 1966 SSGSFLPVPE---RRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALG 2022
Query: 229 KRKWQRLGPLGQPGPVGCACEVSSSG----AGPAAAVDRGG 265
+R G PGP G A E G G A V G
Sbjct: 2023 ER--------GPPGPSGLAGEPGKPGIPGLPGRAGGVGEAG 2055
Score = 30.4 bits (67), Expect = 2.2
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 66 RPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR 109
RPG R A +P +PG P KG G P G DPG +G R
Sbjct: 1306 RPGSPGR-----AGNPGTPGAPGLKGSPGLP-GPRGDPGERGPR 1343
Score = 30.4 bits (67), Expect = 2.2
Identities = 52/222 (23%), Positives = 78/222 (35%), Gaps = 27/222 (12%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQG--HRCGRMGVTEAARLQAHTSHISLLSEGAKMH 138
P P GP G+ G +G PG+ G + G G+ A ++ + +
Sbjct: 1623 PPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDG 1682
Query: 139 RWGSLPRNRGAR-------------RIATPGLGARASRSP-ERVKRTTCPVLQIEAFAGR 184
R GS P + G + R+ G GAR P +R + G
Sbjct: 1683 RNGS-PGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGA 1741
Query: 185 DIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGP 243
G++G EG + G + G+ G+K +R + GK G G GP
Sbjct: 1742 P-GERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKP-----GAAGPSGP 1795
Query: 244 VGCACEVSSSGAG--PAAAVDRGGPCTSA-PAAPGNLSPDSR 282
G A + G P ++G P S P PG D +
Sbjct: 1796 NGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGK 1837
Score = 28.9 bits (63), Expect = 6.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 64 LPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPG 104
LP P R + +A +A +P PG KG G P+G DPG
Sbjct: 2334 LPGP-RGEKGEAGRAGEPGDPGEDGQKGAPG-PKGFKGDPG 2372
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 38.9 bits (89), Expect = 0.006
Identities = 60/237 (25%), Positives = 80/237 (33%), Gaps = 41/237 (17%)
Query: 80 DPLSPGGPAG-KGGAGDP--QGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAK 136
DP P GP G KG +G P +G G PG G + + E L EG
Sbjct: 468 DPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGDPCEVC---------PTLPEG-- 516
Query: 137 MHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTC-PVLQIEAFAGRD--IGKKGGEG 193
+ LP G + + AR + +K P L + G + G G
Sbjct: 517 FQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASG 576
Query: 194 VQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSS 253
VG+ FG+ G+ G K + GP G PGP G
Sbjct: 577 ---DVGSPGFGLPGLPGRA--------GVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIK 625
Query: 254 GAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGSCFP 310
GA +G PC PA D R++ P P+ +G G PG P
Sbjct: 626 GA-------KGEPCEPCPALSNLQDGDVRVVALPGPS------GEKGEPGPPGFGLP 669
Score = 37.0 bits (84), Expect = 0.023
Identities = 63/253 (24%), Positives = 79/253 (31%), Gaps = 35/253 (13%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMG--------VTEAARLQAHTSHISLLSEGA 135
PG P KG GDP A DPG QG + G G V A L + T G+
Sbjct: 524 PGKPGPKGEPGDPVPARGDPGIQGIK-GEKGEPCLSCSSVVGAQHLVSSTGASG--DVGS 580
Query: 136 KMHRWGSLPRNRG-------------ARRIATPG----LGARASRSPERVKRTTCPVLQ- 177
LP G A +PG +G + + CP L
Sbjct: 581 PGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSN 640
Query: 178 IEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ---- 233
++ R + G G + + G FG+ + GK R + G
Sbjct: 641 LQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTG 700
Query: 234 RLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 293
R G G+PG G A G G A G T PG P Q P
Sbjct: 701 RPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGE--QGPEGVGRP 758
Query: 294 ANFASEGLEGVPG 306
GL GV G
Sbjct: 759 GKPGQPGLPGVQG 771
Score = 37.0 bits (84), Expect = 0.023
Identities = 72/271 (26%), Positives = 89/271 (32%), Gaps = 48/271 (17%)
Query: 62 LALPRPGRKRRSQALKASDPLSPG----GPAGKGGAGDPQGAGADPGNQGH-----RCGR 112
+ALP P ++ +P PG G GK G +G D GN G GR
Sbjct: 649 VALPGPSGEK-------GEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGR 701
Query: 113 MGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGA--RRIATPGL-GARASRSPERVK 169
G++ +Q +G K + P +G PG G + + PE V
Sbjct: 702 PGLSGEPGVQGPAG-----PKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVG 756
Query: 170 RTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGK 229
R P G+ G GVQ G G+ E G R Q G
Sbjct: 757 RPGKP------------GQPGLPGVQGPPGLK--GVQGEPGPP-GRGVQGPQGEPGAPGL 801
Query: 230 RKWQRL-GPLGQPGPVGCACEVSSSGA-GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNP 287
Q L GP G PGP G S G G V G S P + L P
Sbjct: 802 PGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGLRGTP 861
Query: 288 LPAHLTANFASEGLEGVPGSC-FPSCGTLPF 317
G +G PG C PS G L F
Sbjct: 862 ------GEKGPRGEKGEPGECSCPSQGDLIF 886
Score = 30.4 bits (67), Expect = 2.2
Identities = 53/211 (25%), Positives = 76/211 (36%), Gaps = 44/211 (20%)
Query: 82 LSPGGPAGKGGAGD-----PQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAK 136
L+P GP KGG G+ P G+ + G +G+ C R ++ A LQ +EG K
Sbjct: 330 LAPSGP--KGGKGERGLPGPPGSKGEKGARGNDCVR--ISPDAPLQC--------AEGPK 377
Query: 137 MHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD--------IGK 188
+ S GA + GL ++ ++ + + GRD IG
Sbjct: 378 GEKGES-----GA--LGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGP 430
Query: 189 KGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 248
KG +G VG G++ E G G L GP G G G +
Sbjct: 431 KGQKGDPGFVGPE--GLAGEPG-----PPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSG 483
Query: 249 EVSSSGAG-----PAAAVDRGGPCTSAPAAP 274
G G P ++G PC P P
Sbjct: 484 IPGKEGPGGKPGKPGVKGEKGDPCEVCPTLP 514
Score = 28.9 bits (63), Expect = 6.3
Identities = 60/235 (25%), Positives = 80/235 (34%), Gaps = 39/235 (16%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSL 143
P GPAG G PQG + G+QG + G+ G + S G
Sbjct: 1130 PPGPAGPRGERGPQGNSGEKGDQGFQ-GQPGFPGPPGPPGFPGKVG--SPGPP-----GP 1181
Query: 144 PRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEF 203
+G+ I P G S P P ++ G+D GK G G G
Sbjct: 1182 QAEKGSEGIRGPS-GLPGSPGPPGPPGIQGPA-GLDGLDGKD-GKPGLRGDPGPAGPP-- 1236
Query: 204 GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDR 263
G+ G K H G + G G+PGP G + G P A +
Sbjct: 1237 GLMGPPGFK------GKTGHPGLPGPK-----GDCGKPGPPGSTGRPGAEGE-PGAMGPQ 1284
Query: 264 GGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA--------NFASEGLEGVPGSCFP 310
G P PG++ P Q P PA ++A GL G+PG P
Sbjct: 1285 G-----RPGPPGHVGPPGPPGQ-PGPAGISAVGLKGDRGATGERGLAGLPGQPGP 1333
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 38.1 bits (87), Expect = 0.010
Identities = 61/232 (26%), Positives = 76/232 (32%), Gaps = 40/232 (17%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGHR-----CGRMGVTEAARLQAHTSHISLLSEGAKMH 138
P GP G+ G P GA + G G + GR GV L + E
Sbjct: 942 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 1001
Query: 139 RWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKV 198
G P +G + G + P PV Q A AG D G+ G G Q
Sbjct: 1002 EVGD-PGQKGTK-------GNKGEHGPPGPPGPIGPVGQPGA-AGAD-GEPGARGPQ--- 1048
Query: 199 GTAEFGISAETGKKINRS----TSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSG 254
FG + G + G K + +GP+G PGP G
Sbjct: 1049 --GHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPG-----PRGP 1101
Query: 255 AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
AGP A GP P GNL P P S G++G PG
Sbjct: 1102 AGPNGADGPQGP----PGGVGNLGP-------PGEKGEPGESGSPGIQGEPG 1142
Score = 35.0 bits (79), Expect = 0.088
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGV 115
PG+K AS P+ PGGP G G P+GA G G + G GV
Sbjct: 1354 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPK-GEKGV 1401
Score = 33.5 bits (75), Expect = 0.26
Identities = 58/229 (25%), Positives = 75/229 (32%), Gaps = 32/229 (13%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 140
P+ P GP G G P GA G G G +G + + E
Sbjct: 1089 PMGPPGPPGPRGPAGPNGADGPQGPPG-GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1147
Query: 141 GSLPRNRGARRIATPG-LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG 199
G + + PG G + + K PV F G D G G G + + G
Sbjct: 1148 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV----GFPG-DPGPPGEGGPRGQDG 1202
Query: 200 T-AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPA 258
+ G E G+ + + LGKR GP G PG G G G
Sbjct: 1203 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR-----GPAGSPGSEG-----RQGGKGA- 1251
Query: 259 AAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGS 307
+G P A APG P PA +GL G+PGS
Sbjct: 1252 ----KGDP--GAIGAPGKTGPVG-------PAGPAGKPGPDGLRGLPGS 1287
Score = 33.5 bits (75), Expect = 0.26
Identities = 59/230 (25%), Positives = 81/230 (35%), Gaps = 36/230 (15%)
Query: 80 DPLSPGGPAGKGGAGDP-----QGAGADPGNQGHRCGR--MGVTEAARLQAHTSHISLLS 132
+P PG P G G P +G PG++G + G+ G A T +
Sbjct: 1212 EPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAG 1271
Query: 133 EGAKMHRWG--SLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKG 190
K G LP + G + PG +A P V P L+ D G KG
Sbjct: 1272 PAGKPGPDGLRGLPGSVGQQ--GRPGATGQAG-PPGPVGPPGLPGLR------GDAGAKG 1322
Query: 191 GEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRL-------GPLGQPGP 243
+G +G G E G+K +R Q G+ GP G PGP
Sbjct: 1323 EKGHPGLIGL--IGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGP 1380
Query: 244 VGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHL 292
G ++G GP GP PG+ P ++Q PLP +
Sbjct: 1381 AGPKGAKGATGPGGPKGEKGVQGP-------PGHPGPPGEVIQ-PLPIQM 1422
Score = 31.6 bits (70), Expect = 0.97
Identities = 63/239 (26%), Positives = 80/239 (33%), Gaps = 30/239 (12%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSL 143
P G G G PQG PG +G + GV L+ H E G +
Sbjct: 612 PPGTKGNQGPSGPQGPLGYPGPRGVK----GVDGIRGLKGHKGE---KGEDGFPGFKGDI 664
Query: 144 PRNRGARRIATPGLGARASRSPERVKRTTCPV-------LQIEAFAGRDIGKKGGEGVQR 196
+ P G+R PE K T P L E G G G Q
Sbjct: 665 GVKGDRGEVGVP--GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQG 722
Query: 197 KVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGC----ACEVS 251
G+ F G +G+K R S G + + GP GQ GP G + +
Sbjct: 723 PKGSLGFPGFPGASGEKGARGLS-----GKSGPRGERGPTGPRGQRGPRGATGKSGAKGT 777
Query: 252 SSGAGP-AAAVDRGGPCTSAP-AAPGNLSPDSRLLQNPLPAH--LTANFASEGLEGVPG 306
S G GP +RG P P PG P ++ LP H +G G PG
Sbjct: 778 SGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPG 836
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 236 GPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTAN 295
GP G PGP G E ++G+G G P P P + + + P T
Sbjct: 920 GPSGPPGPAGSPGERGAAGSGGPI----GPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGR 975
Query: 296 FASEGLEGVPGSCFP 310
+G G+PG P
Sbjct: 976 DGVQGPVGLPGPAGP 990
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 38.1 bits (87), Expect = 0.010
Identities = 61/232 (26%), Positives = 76/232 (32%), Gaps = 40/232 (17%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGHR-----CGRMGVTEAARLQAHTSHISLLSEGAKMH 138
P GP G+ G P GA + G G + GR GV L + E
Sbjct: 921 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 980
Query: 139 RWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKV 198
G P +G + G + P PV Q A AG D G+ G G Q
Sbjct: 981 EVGD-PGQKGTK-------GNKGEHGPPGPPGPIGPVGQPGA-AGAD-GEPGARGPQ--- 1027
Query: 199 GTAEFGISAETGKKINRS----TSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSG 254
FG + G + G K + +GP+G PGP G
Sbjct: 1028 --GHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPG-----PRGP 1080
Query: 255 AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
AGP A GP P GNL P P S G++G PG
Sbjct: 1081 AGPNGADGPQGP----PGGVGNLGP-------PGEKGEPGESGSPGIQGEPG 1121
Score = 35.0 bits (79), Expect = 0.088
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGV 115
PG+K AS P+ PGGP G G P+GA G G + G GV
Sbjct: 1333 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPK-GEKGV 1380
Score = 33.5 bits (75), Expect = 0.26
Identities = 58/229 (25%), Positives = 75/229 (32%), Gaps = 32/229 (13%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 140
P+ P GP G G P GA G G G +G + + E
Sbjct: 1068 PMGPPGPPGPRGPAGPNGADGPQGPPG-GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1126
Query: 141 GSLPRNRGARRIATPG-LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG 199
G + + PG G + + K PV F G D G G G + + G
Sbjct: 1127 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV----GFPG-DPGPPGEGGPRGQDG 1181
Query: 200 T-AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPA 258
+ G E G+ + + LGKR GP G PG G G G
Sbjct: 1182 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR-----GPAGSPGSEG-----RQGGKGA- 1230
Query: 259 AAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGS 307
+G P A APG P PA +GL G+PGS
Sbjct: 1231 ----KGDP--GAIGAPGKTGPVG-------PAGPAGKPGPDGLRGLPGS 1266
Score = 33.5 bits (75), Expect = 0.26
Identities = 59/230 (25%), Positives = 81/230 (35%), Gaps = 36/230 (15%)
Query: 80 DPLSPGGPAGKGGAGDP-----QGAGADPGNQGHRCGR--MGVTEAARLQAHTSHISLLS 132
+P PG P G G P +G PG++G + G+ G A T +
Sbjct: 1191 EPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAG 1250
Query: 133 EGAKMHRWG--SLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKG 190
K G LP + G + PG +A P V P L+ D G KG
Sbjct: 1251 PAGKPGPDGLRGLPGSVGQQ--GRPGATGQAG-PPGPVGPPGLPGLR------GDAGAKG 1301
Query: 191 GEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRL-------GPLGQPGP 243
+G +G G E G+K +R Q G+ GP G PGP
Sbjct: 1302 EKGHPGLIGL--IGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGP 1359
Query: 244 VGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHL 292
G ++G GP GP PG+ P ++Q PLP +
Sbjct: 1360 AGPKGAKGATGPGGPKGEKGVQGP-------PGHPGPPGEVIQ-PLPIQM 1401
Score = 31.6 bits (70), Expect = 0.97
Identities = 63/239 (26%), Positives = 80/239 (33%), Gaps = 30/239 (12%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSL 143
P G G G PQG PG +G + GV L+ H E G +
Sbjct: 591 PPGTKGNQGPSGPQGPLGYPGPRGVK----GVDGIRGLKGHKGE---KGEDGFPGFKGDI 643
Query: 144 PRNRGARRIATPGLGARASRSPERVKRTTCPV-------LQIEAFAGRDIGKKGGEGVQR 196
+ P G+R PE K T P L E G G G Q
Sbjct: 644 GVKGDRGEVGVP--GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQG 701
Query: 197 KVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGC----ACEVS 251
G+ F G +G+K R S G + + GP GQ GP G + +
Sbjct: 702 PKGSLGFPGFPGASGEKGARGLS-----GKSGPRGERGPTGPRGQRGPRGATGKSGAKGT 756
Query: 252 SSGAGP-AAAVDRGGPCTSAP-AAPGNLSPDSRLLQNPLPAH--LTANFASEGLEGVPG 306
S G GP +RG P P PG P ++ LP H +G G PG
Sbjct: 757 SGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPG 815
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 236 GPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTAN 295
GP G PGP G E ++G+G G P P P + + + P T
Sbjct: 899 GPSGPPGPAGSPGERGAAGSGGPI----GPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGR 954
Query: 296 FASEGLEGVPGSCFP 310
+G G+PG P
Sbjct: 955 DGVQGPVGLPGPAGP 969
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 38.1 bits (87), Expect = 0.010
Identities = 61/232 (26%), Positives = 76/232 (32%), Gaps = 40/232 (17%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGHR-----CGRMGVTEAARLQAHTSHISLLSEGAKMH 138
P GP G+ G P GA + G G + GR GV L + E
Sbjct: 1028 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 1087
Query: 139 RWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKV 198
G P +G + G + P PV Q A AG D G+ G G Q
Sbjct: 1088 EVGD-PGQKGTK-------GNKGEHGPPGPPGPIGPVGQPGA-AGAD-GEPGARGPQ--- 1134
Query: 199 GTAEFGISAETGKKINRS----TSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSG 254
FG + G + G K + +GP+G PGP G
Sbjct: 1135 --GHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPG-----PRGP 1187
Query: 255 AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
AGP A GP P GNL P P S G++G PG
Sbjct: 1188 AGPNGADGPQGP----PGGVGNLGP-------PGEKGEPGESGSPGIQGEPG 1228
Score = 35.0 bits (79), Expect = 0.088
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGV 115
PG+K AS P+ PGGP G G P+GA G G + G GV
Sbjct: 1440 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPK-GEKGV 1487
Score = 33.5 bits (75), Expect = 0.26
Identities = 58/229 (25%), Positives = 75/229 (32%), Gaps = 32/229 (13%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 140
P+ P GP G G P GA G G G +G + + E
Sbjct: 1175 PMGPPGPPGPRGPAGPNGADGPQGPPG-GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1233
Query: 141 GSLPRNRGARRIATPG-LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG 199
G + + PG G + + K PV F G D G G G + + G
Sbjct: 1234 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV----GFPG-DPGPPGEGGPRGQDG 1288
Query: 200 T-AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPA 258
+ G E G+ + + LGKR GP G PG G G G
Sbjct: 1289 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR-----GPAGSPGSEG-----RQGGKGA- 1337
Query: 259 AAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGS 307
+G P A APG P PA +GL G+PGS
Sbjct: 1338 ----KGDP--GAIGAPGKTGPVG-------PAGPAGKPGPDGLRGLPGS 1373
Score = 33.5 bits (75), Expect = 0.26
Identities = 59/230 (25%), Positives = 81/230 (35%), Gaps = 36/230 (15%)
Query: 80 DPLSPGGPAGKGGAGDP-----QGAGADPGNQGHRCGR--MGVTEAARLQAHTSHISLLS 132
+P PG P G G P +G PG++G + G+ G A T +
Sbjct: 1298 EPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAG 1357
Query: 133 EGAKMHRWG--SLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKG 190
K G LP + G + PG +A P V P L+ D G KG
Sbjct: 1358 PAGKPGPDGLRGLPGSVGQQ--GRPGATGQAG-PPGPVGPPGLPGLR------GDAGAKG 1408
Query: 191 GEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRL-------GPLGQPGP 243
+G +G G E G+K +R Q G+ GP G PGP
Sbjct: 1409 EKGHPGLIGL--IGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGP 1466
Query: 244 VGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHL 292
G ++G GP GP PG+ P ++Q PLP +
Sbjct: 1467 AGPKGAKGATGPGGPKGEKGVQGP-------PGHPGPPGEVIQ-PLPIQM 1508
Score = 31.6 bits (70), Expect = 0.97
Identities = 63/239 (26%), Positives = 80/239 (33%), Gaps = 30/239 (12%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSL 143
P G G G PQG PG +G + GV L+ H E G +
Sbjct: 698 PPGTKGNQGPSGPQGPLGYPGPRGVK----GVDGIRGLKGHKGE---KGEDGFPGFKGDI 750
Query: 144 PRNRGARRIATPGLGARASRSPERVKRTTCPV-------LQIEAFAGRDIGKKGGEGVQR 196
+ P G+R PE K T P L E G G G Q
Sbjct: 751 GVKGDRGEVGVP--GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQG 808
Query: 197 KVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGC----ACEVS 251
G+ F G +G+K R S G + + GP GQ GP G + +
Sbjct: 809 PKGSLGFPGFPGASGEKGARGLS-----GKSGPRGERGPTGPRGQRGPRGATGKSGAKGT 863
Query: 252 SSGAGP-AAAVDRGGPCTSAP-AAPGNLSPDSRLLQNPLPAH--LTANFASEGLEGVPG 306
S G GP +RG P P PG P ++ LP H +G G PG
Sbjct: 864 SGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPG 922
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 236 GPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTAN 295
GP G PGP G E ++G+G G P P P + + + P T
Sbjct: 1006 GPSGPPGPAGSPGERGAAGSGGPI----GPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGR 1061
Query: 296 FASEGLEGVPGSCFP 310
+G G+PG P
Sbjct: 1062 DGVQGPVGLPGPAGP 1076
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 37.7 bits (86), Expect = 0.014
Identities = 59/235 (25%), Positives = 77/235 (32%), Gaps = 42/235 (17%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 140
P P GP GK G P G G G R G G+ L+ L +
Sbjct: 745 PPGPTGPPGKDGPNGPPGPPGTKGEPGER-GEDGLPGKPGLRGEIGEQGLAGRPGEKGEA 803
Query: 141 GSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG 199
G LP PG G R + + K L + G D G+KG G G
Sbjct: 804 G-LP--------GAPGFPGVRGEKGDQGEKGE----LGLPGLKG-DRGEKGEAGPAGPPG 849
Query: 200 --------TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVS 251
T + E G K + + G+ LGP G GP G +
Sbjct: 850 LPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRP--GELGPQGPTGPPGAKGQEG 907
Query: 252 SSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
+ GA AA P APG++ P P+ + + GL G PG
Sbjct: 908 AHGAPGAA---------GNPGAPGHVGA-------PGPSGPPGSVGAPGLRGTPG 946
Score = 33.9 bits (76), Expect = 0.20
Identities = 69/275 (25%), Positives = 85/275 (30%), Gaps = 65/275 (23%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGH-----RCGRMGVTEAARL 121
PG + R L P P G G+ GA GA +PG GH G G A L
Sbjct: 882 PGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGL 941
Query: 122 QAHTSHISLLSEGAKMHRWGSLPRNRGAR-RIATPGLGARASRSPERVKRTTCPVLQIEA 180
+ E GS P G R PGL +
Sbjct: 942 RGTPGKDGERGEKGAAGEEGS-PGPVGPRGDPGAPGLPGPPGK----------------- 983
Query: 181 FAGRDIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCL------------ 227
GK G G++ G G A GK R + G C+
Sbjct: 984 ------GKDGEPGLRGSPGLPGPLGTKAACGKV--RGSENCALGGQCVKGDRGAPGIPGS 1035
Query: 228 -GKRKWQRLGPLGQPGPVGCACEVSSSGA-------GPAAAVDRGGPCTSAPAAPGNLSP 279
G R +G G PGP G + S G+ GP R G AP PG P
Sbjct: 1036 PGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDG----APGNPGERGP 1091
Query: 280 DSR----LLQNPLPAHLTA----NFASEGLEGVPG 306
+ L +P +L A N G G+PG
Sbjct: 1092 PGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPG 1126
Score = 32.7 bits (73), Expect = 0.44
Identities = 67/252 (26%), Positives = 86/252 (34%), Gaps = 30/252 (11%)
Query: 59 RDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGH--RCGRMGVT 116
R A +P R + + P P GP G G+ +G PG QG R G G
Sbjct: 1027 RGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNP 1086
Query: 117 EAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGL-GARASRS-PERVKRTTCP 174
SLLS G + + PGL G + + P + R
Sbjct: 1087 GERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTE 1146
Query: 175 VLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQR 234
+ EA G G G Q G E G E G+K + Q H G
Sbjct: 1147 GKKGEAGPPGLPGPPGIAGPQGSQG--ERGADGEVGQKGD------QGHPGVPGF----- 1193
Query: 235 LGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA 294
+GP G PGP G + + AGP +G P P PG P LP +
Sbjct: 1194 MGPPGNPGPPG--ADGIAGAAGPPGI--QGSPGKEGP--PGPQGPSG------LPG-IPG 1240
Query: 295 NFASEGLEGVPG 306
EG +G PG
Sbjct: 1241 EEGKEGRDGKPG 1252
Score = 32.3 bits (72), Expect = 0.57
Identities = 66/264 (25%), Positives = 87/264 (32%), Gaps = 50/264 (18%)
Query: 80 DPLSPG--GPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 137
DP +PG GP GKG G+P G PG G +G A + + +L + K
Sbjct: 971 DPGAPGLPGPPGKGKDGEP-GLRGSPGLPGP----LGTKAACGKVRGSENCALGGQCVKG 1025
Query: 138 HRWG-SLPRNRGARRIATPGLGARASRSPERV--------KRTTCPVLQIEAFAGRD--I 186
R +P + G+R PG+G P R + AGRD
Sbjct: 1026 DRGAPGIPGSPGSR--GDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAP 1083
Query: 187 GKKGGEGVQRKVGTAEF----------------------GISAETGKKINRSTSYMQSHG 224
G G G K G + G+ G K ++
Sbjct: 1084 GNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGRE 1143
Query: 225 NCLGKRKWQRLGPLGQPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRL 283
GK+ GP G PGP G A S G G V + G P PG + P
Sbjct: 1144 GTEGKKG--EAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGD-QGHPGVPGFMGPPG-- 1198
Query: 284 LQNPLPAHLTANFASEGLEGVPGS 307
NP P + G G+ GS
Sbjct: 1199 --NPGPPGADGIAGAAGPPGIQGS 1220
Score = 31.6 bits (70), Expect = 0.97
Identities = 55/214 (25%), Positives = 76/214 (35%), Gaps = 31/214 (14%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 140
P+ GP G GA P GA PG +G + G +G+ Q L R
Sbjct: 491 PMGLPGPKGDIGAIGPVGA---PGPKGEK-GDVGIGPFG--QGEKGEKGSLGLPGPPGRD 544
Query: 141 GSLPRNRGARRIATPGL----GARASRSPERVK----RTTCPVLQIEAFAGRDIGKKGGE 192
GS + PGL G R + P + R P LQ E G+KG
Sbjct: 545 GSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGER------GEKGTR 598
Query: 193 GVQRKVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACE-- 249
G + + G F G +TG++ S + G +GP G PG G +
Sbjct: 599 GEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGD-----VGPAGPPGVPGSVVQQE 653
Query: 250 -VSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSR 282
+ P +G P P A G + P+ R
Sbjct: 654 GLKGEQGAPGPRGHQGAP--GPPGARGPIGPEGR 685
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 37.0 bits (84), Expect = 0.023
Identities = 65/236 (27%), Positives = 83/236 (35%), Gaps = 36/236 (15%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGH-----RCGRMGVTEAARLQAHTSHISLLSEGAKMH 138
P GP GK G G +PG G G G L+ H H L EG K
Sbjct: 256 PEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGL--EGPKGE 313
Query: 139 RWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKV 198
P ++G P +GA P + P + G++G G+ K
Sbjct: 314 --VGAPGSKGEAGPTGP-MGAMGPLGPRGM-----PGERGRLGPQGAPGQRGAHGMPGKP 365
Query: 199 G-TAEFGISAETGKKINRSTSYMQSHGNCLGKR-----KWQRLGPLGQPGPVGCACEVSS 252
G GI +G N M+ G R + QR G G PGPVG +
Sbjct: 366 GPMGPLGIPGSSGFPGNPG---MKGEAGPTGARGPEGPQGQR-GETGPPGPVGSPGLPGA 421
Query: 253 SGAG--PAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
G P A G P TS P PG+ P +P P T +G+ G PG
Sbjct: 422 IGTDGTPGAKGPTGSPGTSGP--PGSAGPPG----SPGPQGST---GPQGIRGQPG 468
Score = 33.9 bits (76), Expect = 0.20
Identities = 63/232 (27%), Positives = 82/232 (35%), Gaps = 35/232 (15%)
Query: 83 SPG--GPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 140
+PG GP G G P G PG+ G G G A + E
Sbjct: 1015 TPGKVGPTGATGDKGPPGPVGPPGSNGP-VGEPGPEGPAGNDGTPGRDGAVGERGDRGDP 1073
Query: 141 G--SLPRNRGARRIATPG-LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRK 197
G LP ++GA TPG +GA + P+ GR GK+G G Q
Sbjct: 1074 GPAGLPGSQGAP--GTPGPVGAPGDAGQRGDPGSRGPI----GPPGR-AGKRGLPGPQGP 1126
Query: 198 VGT-AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQR-------LGPLGQPGPVGCACE 249
G + G + G+K +R + +Q G Q GP G PGPVG + +
Sbjct: 1127 RGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGK 1186
Query: 250 VSSSG-------AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA 294
+ G G +V GP P PG P P HLTA
Sbjct: 1187 EGNPGPLGPIGPPGVRGSVGEAGP-EGPPGEPGPPGPPGP------PGHLTA 1231
Score = 32.0 bits (71), Expect = 0.75
Identities = 74/282 (26%), Positives = 87/282 (30%), Gaps = 55/282 (19%)
Query: 67 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 126
PG+ +A A P G P GK G P G PG G R G G Q
Sbjct: 626 PGKP--GEAGNAGVPGQRGAP-GKDGEVGPSGPVGPPGLAGER-GEQGPPGPTGFQGLPG 681
Query: 127 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRS--PERVKRTTCPVLQIEAFAG- 183
EG K G +P + G A LG R R ER + + + AG
Sbjct: 682 PPGPPGEGGKPGDQG-VPGDPG----AVGPLGPRGERGNPGERGEPGITGLPGEKGMAGG 736
Query: 184 -RDIGKKGGEGVQRKVG----------TAEFGISAETGKKINRSTSYMQSHGNCLGKRKW 232
G KG G G E GI+ G K +R + G
Sbjct: 737 HGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGA 796
Query: 233 QRL-GPLGQPGPVGCACEVSSSGA-------------------GPAAAVDRGGP------ 266
+ L GPLG PGP G E G GP AV GP
Sbjct: 797 RGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQ 856
Query: 267 --CTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
P PG +P P L + G GVPG
Sbjct: 857 PGVKGEPGEPGQKGDAG----SPGPQGLAGSPGPHGPNGVPG 894
Score = 32.0 bits (71), Expect = 0.75
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 81 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGR 112
P+ P G AGK G PQG D G+ G R R
Sbjct: 1108 PIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDR 1139
Score = 30.8 bits (68), Expect = 1.7
Identities = 56/239 (23%), Positives = 81/239 (33%), Gaps = 42/239 (17%)
Query: 78 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 137
A PL P G G+ G PQGA G G G+ G + +
Sbjct: 331 AMGPLGPRGMPGERGRLGPQGAPGQRGAHGMP-GKPGPMGPLGIPGSSG----------- 378
Query: 138 HRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEA-----FAGRDIGKKGGE 192
P N G + A P GAR P+ + T P + + G D G G +
Sbjct: 379 -----FPGNPGMKGEAGP-TGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTD-GTPGAK 431
Query: 193 GVQRKVGTA----EFGISAETGKKINRSTSYMQSHGNCLGKRKWQ-RLGPLGQPGPVGCA 247
G GT+ G G + + ++ G ++ GP G+PGP G
Sbjct: 432 GPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQ 491
Query: 248 CEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
+ GP + GP PG + P + + P N G +G+PG
Sbjct: 492 GPI-----GPPGEEGKRGP----RGDPGTVGPPGPVGERGAP----GNRGFPGSDGLPG 537
Score = 30.0 bits (66), Expect = 2.8
Identities = 52/210 (24%), Positives = 66/210 (31%), Gaps = 54/210 (25%)
Query: 84 PGGPAGKGGAGDPQGAGAD--PGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWG 141
PGGP KG G+ G D PG G G+ G+
Sbjct: 962 PGGPGDKGDPGEDGQPGPDGPPGPAG-TTGQRGIV------------------------- 995
Query: 142 SLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG-T 200
+P RG R PGL A +P +V T G G +G VG
Sbjct: 996 GMPGQRGER--GMPGLPGPAG-TPGKVGPT---------------GATGDKGPPGPVGPP 1037
Query: 201 AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGA-GPAA 259
G E G + +G+R G G PGP G + G GP
Sbjct: 1038 GSNGPVGEPGPEGPAGNDGTPGRDGAVGER-----GDRGDPGPAGLPGSQGAPGTPGPVG 1092
Query: 260 AVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 289
A G P + G + P R + LP
Sbjct: 1093 APGDAGQ-RGDPGSRGPIGPPGRAGKRGLP 1121
Score = 28.5 bits (62), Expect = 8.2
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 84 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMG 114
P GP G+ G P G DPG+ G R G G
Sbjct: 928 PAGPLGEPGKEGPPGLRGDPGSHG-RVGDRG 957
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 37.0 bits (84), Expect = 0.023
Identities = 71/258 (27%), Positives = 84/258 (32%), Gaps = 63/258 (24%)
Query: 52 VSRSGVGRDALALPRPGRKRRSQALKASDPLSPG-GPAGKGGAGDPQGAGADPGNQGHRC 110
+ RS G D AL G R L PG G G+G G G G + R
Sbjct: 1 MQRSRAGADEAALLLAGLALRE--------LEPGCGSPGRGRRGPRPGPGDEAAPALGRR 52
Query: 111 GRMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKR 170
G+ S G + G RG RR A P L A+ + SP
Sbjct: 53 GKG------------------SGGPEAGADGLSRGERGPRRAAVPELSAQPAGSPR---- 90
Query: 171 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKR 230
+ AG D G GG G R G S Y Q HG+ R
Sbjct: 91 --------ASLAGSDGG--GGGGSARSSGI---------------SLGYDQRHGSPRSGR 125
Query: 231 KWQRLGPLGQPGPVGCACEVSSSGA-GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 289
R GP G P VSS G+ G A A P + PA + P P P
Sbjct: 126 SDPRPGP-GPPSVGSARSSVSSLGSRGSAGAYADFLPPGACPAPARSPEP-----AGPAP 179
Query: 290 AHLTANFASEGLEGVPGS 307
L A G EG P +
Sbjct: 180 FPLPALPLPPGREGGPSA 197
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 36.6 bits (83), Expect = 0.030
Identities = 59/215 (27%), Positives = 74/215 (34%), Gaps = 26/215 (12%)
Query: 86 GPAGKGGAGDPQGAGADPGNQGH--RCGRMGVTEAARLQAHTSHISLLS-EGAKMHRWGS 142
GP G+ G P G PG G R G G A L+ + +GA
Sbjct: 1378 GPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAP-----G 1432
Query: 143 LPRNRGARRIATP--GLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGT 200
P G R I P G S P+ P + G D G KG +G +G
Sbjct: 1433 KPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPP-GLPGLKG-DSGPKGEKGHPGLIGL 1490
Query: 201 AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQR-LGPLGQPGPVGCACEVSSSGAGPAA 259
G E G+K +R Q G++ GP+G PGP G GP
Sbjct: 1491 --IGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGL-----PGPPGPKG 1543
Query: 260 AVDRGGPC-----TSAPAAPGNLSPDSRLLQNPLP 289
A GP P PG P ++Q PLP
Sbjct: 1544 AKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQ-PLP 1577
Score = 34.7 bits (78), Expect = 0.11
Identities = 63/243 (25%), Positives = 80/243 (32%), Gaps = 31/243 (12%)
Query: 82 LSPGGPAGKGGAGDPQGAG---ADPGNQG--HRCGRMGVTEAARLQAHTSHISLLS---- 132
+ P GP G+ G P+G G DPG G G++GV +
Sbjct: 831 IGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGF 890
Query: 133 EGAKMHRWG-SLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD--IGKK 189
GA + G P G R P G R R P + P + +G D G
Sbjct: 891 PGANGEKGGRGTPGKPGPRGQRGP-TGPRGERGPRGITGKPGP----KGNSGGDGPAGPP 945
Query: 190 GGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACE 249
G G G G G + H G+ +Q G G PGP G
Sbjct: 946 GERGPNGPQGPT--GFPGPKGPPGPPGKDGLPGHPGQRGETGFQ--GKTGPPGPPGVVGP 1001
Query: 250 VSSSG-AGPAAAVDRGGPCTSAPAAPG-----NLSPDSRLLQNPLPAHLTANFASEGLEG 303
+G GP +RG P P PG L+ +P PA L GL G
Sbjct: 1002 QGPTGETGPMG--ERGHP--GPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRG 1057
Query: 304 VPG 306
PG
Sbjct: 1058 FPG 1060
Score = 33.5 bits (75), Expect = 0.26
Identities = 69/261 (26%), Positives = 84/261 (32%), Gaps = 28/261 (10%)
Query: 57 VGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVT 116
VG L P PG K + + P P GP G GA G PG G G
Sbjct: 1227 VGLQGLPGP-PGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGG----IGNPGAV 1281
Query: 117 EAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPG-----LGARASRSPERVKRT 171
L EG G RG + + P G + + K +
Sbjct: 1282 GEKGEPGEAGEPGLPGEGGPPGPKG----ERGEKGESGPSGAAGPPGPKGPPGDDGPKGS 1337
Query: 172 TCPVLQIEAFAGRDIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKR 230
PV F G D G G G + G + G E G+ + + GKR
Sbjct: 1338 PGPV----GFPG-DPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKR 1392
Query: 231 KWQRLGPLGQPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 289
GP G GP G E + G AG + GP APG PD L P P
Sbjct: 1393 -----GPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGP-IGPQGAPGKPGPDG-LRGIPGP 1445
Query: 290 AHLTANFASEGLEGVPGSCFP 310
S G +G PG P
Sbjct: 1446 VGEQGLPGSPGPDGPPGPMGP 1466
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 52 VSRSGVGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR 109
V G D + PG+K P P GP G G P GA +PG +G +
Sbjct: 1149 VGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQ 1206
Score = 29.6 bits (65), Expect = 3.7
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 236 GPLGQPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA 294
GP G PGP G E +G AGP R GP A +P + Q P
Sbjct: 1078 GPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AG 1132
Query: 295 NFASEGLEGVPGSCFP 310
+G G+PG P
Sbjct: 1133 RDGLQGPVGLPGPAGP 1148
>gi|169166115 PREDICTED: hypothetical protein [Homo sapiens]
Length = 283
Score = 36.2 bits (82), Expect = 0.040
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 10 SCRKRQSCGDDDSLTAIRVTVARKIPNRLSLACFRDSEA-----------LLSVSRSGVG 58
+C +R+ C D + TA+R +L L F D+ LL + G
Sbjct: 81 ACGERERCCDATNATAVRCC-------KLPLHAFLDNVGWFVRKLSGLLILLVLFAIGYF 133
Query: 59 RDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADP 103
+ P P R R QA P PGG GGAG P P
Sbjct: 134 LQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSP 178
>gi|169165309 PREDICTED: hypothetical protein [Homo sapiens]
Length = 283
Score = 36.2 bits (82), Expect = 0.040
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 10 SCRKRQSCGDDDSLTAIRVTVARKIPNRLSLACFRDSEA-----------LLSVSRSGVG 58
+C +R+ C D + TA+R +L L F D+ LL + G
Sbjct: 81 ACGERERCCDATNATAVRCC-------KLPLHAFLDNVGWFVRKLSGLLILLVLFAIGYF 133
Query: 59 RDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADP 103
+ P P R R QA P PGG GGAG P P
Sbjct: 134 LQRIICPSPRRYPRGQARPGQRPGPPGGAGPLGGAGPPDDDDDSP 178
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 36.2 bits (82), Expect = 0.040
Identities = 75/291 (25%), Positives = 96/291 (32%), Gaps = 47/291 (16%)
Query: 58 GRDALALPR-----PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRC-- 110
GR+ PR PG + + A +P P GP G G+ P+G+ PG QG
Sbjct: 624 GREGPMGPRGEAGPPGSGEKGERGAAGEP-GPHGPPGVPGSVGPKGSSGSPGPQGPPGPV 682
Query: 111 ------------------GRMGVTEAARLQAHTSHISLLSEGAKMHRWGSL--PRNRGAR 150
G MG Q L E G++ P +GA
Sbjct: 683 GLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAM 742
Query: 151 RIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGT----AEFGIS 206
A P G + R + + T P ++ D GK G G Q G GI
Sbjct: 743 GPAGPD-GHQGPRGEQGL--TGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIK 799
Query: 207 AETGKK----INRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC-----EVSSSGAGP 257
E G + +S + G GP G PGP G A EV + P
Sbjct: 800 GEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPP 859
Query: 258 AAAVDRGGPCTSAPAAPGNLSPDSRLLQNP--LPAHLTANFASEGLEGVPG 306
RG P S P PG P L P P +N + L G PG
Sbjct: 860 GPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSN-SETFLSGPPG 909
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 35.4 bits (80), Expect = 0.067
Identities = 55/232 (23%), Positives = 80/232 (34%), Gaps = 24/232 (10%)
Query: 68 GRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSH 127
GR RR +A L P G G G+ GA P + G V EAA L+
Sbjct: 281 GRHRRHRAWMHQKGLGPRGQDGARPPGEGSSTGASPESPP---GAEAVPEAAVLEVSEPP 337
Query: 128 ISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIG 187
+ E + GS P G R G G A P +RT + + AGR
Sbjct: 338 AEAVGEAS-----GSCPLRPGELR-GGGGGGQGAEGPPGTPRRTGKGNRRKKRAAGRGAL 391
Query: 188 KKGGEGVQRKVGTAEFGISAETGKKINRSTSYM---------QSHGNCLGKRKWQRLGPL 238
+GG+ G E E + + + + G+ + + + L
Sbjct: 392 SRGGDSAPLSPGDKEDASHQEALGNLPSPSEHKLPECHLVKEEYEGSGKPESEPKELKTA 451
Query: 239 GQPGP-VGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 289
G+ P + AC + GAG G C + G+ P+ L P P
Sbjct: 452 GEKEPQLSEACGPTEEGAGERELEGPGLLCMA-----GHTGPEGPLSDTPTP 498
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 35.0 bits (79), Expect = 0.088
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 66 RPGRKRRSQALKASDPLSPGGPAGKG-GAGDPQGAGADPGNQGHRCGRMG 114
R GRKRRS A PGG AG G G GD G+ A G +G + G
Sbjct: 34 RGGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQ-GKRGKKSAGCG 82
>gi|169211554 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 35.0 bits (79), Expect = 0.088
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 213 INRSTSYMQSHGNCLGKRKWQRLGPL--------GQPGP-----VGCAC-------EVSS 252
+NRS S + GN L KR W + + G P P G AC E+
Sbjct: 1 MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60
Query: 253 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 293
A A R PC S P A G + L PL A LT
Sbjct: 61 LSAATDTAPSRAAPCPSTPGAAGRANNKEPPL--PLLADLT 99
>gi|169211959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 35.0 bits (79), Expect = 0.088
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 213 INRSTSYMQSHGNCLGKRKWQRLGPL--------GQPGP-----VGCAC-------EVSS 252
+NRS S + GN L KR W + + G P P G AC E+
Sbjct: 1 MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60
Query: 253 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 293
A A R PC S P A G + L PL A LT
Sbjct: 61 LSAATDTAPSRAAPCPSTPGAAGRANNKEPPL--PLLADLT 99
>gi|169211178 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 35.0 bits (79), Expect = 0.088
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 213 INRSTSYMQSHGNCLGKRKWQRLGPL--------GQPGP-----VGCAC-------EVSS 252
+NRS S + GN L KR W + + G P P G AC E+
Sbjct: 1 MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSLDPFRKELPP 60
Query: 253 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 293
A A R PC S P A G + L PL A LT
Sbjct: 61 LSAATDTAPSRAAPCPSTPGAAGRANNKEPPL--PLLADLT 99
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 35.0 bits (79), Expect = 0.088
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 235 LGPLGQPGPVGCACEVSSSG--AGPAAAVDRG--GPCTSAPAAPG 275
+GPLG PGP+G + E G P AA D+G GP T P PG
Sbjct: 76 IGPLGAPGPIGLSGEKGMRGDRGPPGAAGDKGDKGP-TGVPGFPG 119
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 236 GPLGQPGPVGCACEVSSSG-------AGPAAAVDRGGPCTSA--PAAPGN-----LSPDS 281
GP G+PG GC +SG GP + R GP S+ P PG+ L
Sbjct: 1085 GPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQP 1144
Query: 282 RLLQNPLPAHLTANFASEGLEGVPGSCFPS 311
+ +P P L + G+ G PG PS
Sbjct: 1145 GEMGDPGPRGLQGD---PGIPGPPGIKGPS 1171
Score = 30.4 bits (67), Expect = 2.2
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 234 RLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRL----LQNPLP 289
R GP G PGP G GP A VD P APG P+ + ++ P
Sbjct: 1353 RKGPTGLPGPRG--------EPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSG 1404
Query: 290 AHLTAN---FASEGLEGVPGSCFP 310
G++GVPGS P
Sbjct: 1405 PGCKGEPGLDGRRGVDGVPGSPGP 1428
Score = 29.6 bits (65), Expect = 3.7
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 235 LGPLGQPGPVGCACEVSSSGAG-PAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 293
LGP G+ GPVG G G P +RG P P PG PD L+ ++
Sbjct: 618 LGPPGKAGPVG------PPGLGFPGPPGERGHP--GVPGHPGVRGPDG--LKGQKGDTIS 667
Query: 294 ANFASEGLEGVPG 306
N G G PG
Sbjct: 668 CNVTYPGRHGPPG 680
Score = 28.9 bits (63), Expect = 6.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 79 SDPLSPGGPAGKGGAGDPQGAGADPGNQG 107
S +SP GP GK G P G+ PG G
Sbjct: 1217 SPGISPPGPRGKKGPPGPPGSSGPPGPAG 1245
Score = 28.5 bits (62), Expect = 8.2
Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 187 GKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGC 246
G KG G+ GI G++ + + + G GK+ GP G PG
Sbjct: 1187 GTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGP-RGKK-----GPPGPPG---- 1236
Query: 247 ACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 306
SS GPA A R P PG+ P P + + L G PG
Sbjct: 1237 ----SSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPG 1292
Query: 307 SC 308
C
Sbjct: 1293 DC 1294
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,008,285
Number of Sequences: 37866
Number of extensions: 861801
Number of successful extensions: 9232
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 5749
Number of HSP's gapped (non-prelim): 3011
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.