Guide to the Human Genome
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Name: LOC100128105 Sequence: fasta or formatted (115aa) NCBI GI: 169211554
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {115aa} PREDICTED: hypothetical protein
alt mRNA {115aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         15           2
 C cysteine            2.6          3           1
 D aspartate           3.5          4           1
 E glutamate           3.5          4           1
 F phenylalanine       2.6          3           1
 G glycine             4.3          5           1
 H histidine           0.9          1           1
 I isoleucine          0.9          1           1
 K lysine              4.3          5           1
 L leucine            11.3         13           2
 M methionine          0.9          1           1
 N asparagine          3.5          4           2
 P proline            12.2         14           2
 Q glutamine           6.1          7           3
 R arginine            7.0          8           1
 S serine              9.6         11           1
 T threonine           6.1          7           1
 V valine              5.2          6           2
 W tryptophan          1.7          2           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128105          1.000   PREDICTED: hypothetical protein 
LOC100128105          0.981   PREDICTED: hypothetical protein 
LOC730236             0.047   PREDICTED: hypothetical protein 
LOC730236             0.047   PREDICTED: hypothetical protein 
LOC730236             0.047   PREDICTED: hypothetical protein 
SCARF2                0.043   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.043   scavenger receptor class F, member 2 isoform 2 [Homo...
LOC284297             0.043   hypothetical protein LOC284297 
LOC100292307          0.038   PREDICTED: hypothetical protein 
LOC100290778          0.038   PREDICTED: hypothetical protein XP_002346922 
LOC100288747          0.038   PREDICTED: hypothetical protein XP_002342803 
LOC100288747          0.038   PREDICTED: hypothetical protein 
ISYNA1                0.038   inositol-3-phosphate synthase 1 
FBXO42                0.038   F-box protein 42 
PDCD6IP               0.038   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.038   programmed cell death 6 interacting protein isoform ...
LOC100292865          0.038   PREDICTED: hypothetical protein 
HIC1                  0.033   hypermethylated in cancer 1 isoform 2 
HIC1                  0.033   hypermethylated in cancer 1 isoform 1 
KIAA1522              0.033   hypothetical protein LOC57648 
MXRA7                 0.033   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.033   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.033   transmembrane anchor protein 1 isoform 1 
MAST3                 0.033   microtubule associated serine/threonine kinase 3 [H...
C15orf55              0.033   nuclear protein in testis 
LOC100294402          0.028   PREDICTED: similar to single Ig IL-1R-related molec...
LOC100291660          0.028   PREDICTED: hypothetical protein XP_002345223 
LOC100289147          0.028   PREDICTED: hypothetical protein 
LOC100289147          0.028   PREDICTED: hypothetical protein XP_002343718 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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