Guide to the Human Genome
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Name: LOC100131988 Sequence: fasta or formatted (234aa) NCBI GI: 169205008
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {234aa} PREDICTED: hypothetical protein
alt mRNA {234aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         31           4
 C cysteine            1.3          3           2
 D aspartate           3.8          9           1
 E glutamate           8.1         19           2
 F phenylalanine       1.7          4           1
 G glycine            17.9         42           2
 H histidine           1.3          3           1
 I isoleucine          1.3          3           1
 K lysine              2.6          6           1
 L leucine            10.7         25           3
 M methionine          0.9          2           1
 N asparagine          1.3          3           2
 P proline             6.8         16           3
 Q glutamine           2.6          6           2
 R arginine            6.8         16           2
 S serine              6.8         16           1
 T threonine           4.7         11           1
 V valine              6.0         14           1
 W tryptophan          1.7          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131988          1.000   PREDICTED: hypothetical protein 
LOC100131988          1.000   PREDICTED: hypothetical protein 
ARID1B                0.038   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.038   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.038   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
IRS4                  0.038   insulin receptor substrate 4 
KRT2                  0.038   keratin 2 
AEBP2                 0.038   AE binding protein 2 isoform b 
AEBP2                 0.038   AE binding protein 2 isoform a 
KRT5                  0.036   keratin 5 
LOC100128960          0.033   PREDICTED: similar to paraneoplastic antigen MA2 [H...
LOC100128960          0.033   PREDICTED: similar to Putative paraneoplastic antig...
KRT9                  0.031   keratin 9 
AVEN                  0.031   cell death regulator aven 
COL1A1                0.031   alpha 1 type I collagen preproprotein 
LOC100289969          0.031   PREDICTED: hypothetical protein XP_002347692 
COL7A1                0.031   alpha 1 type VII collagen precursor 
TAF15                 0.029   TBP-associated factor 15 isoform 2 
TAF15                 0.029   TBP-associated factor 15 isoform 1 
LOC100290372          0.029   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.029   PREDICTED: hypothetical protein XP_002342652 
EN2                   0.029   engrailed homeobox 2 
OSBP                  0.029   oxysterol binding protein 
ONECUT3               0.029   one cut homeobox 3 
BRWD3                 0.029   bromodomain and WD repeat domain containing 3 [Homo...
KHSRP                 0.029   KH-type splicing regulatory protein 
FUS                   0.029   fusion (involved in t(12;16) in malignant liposarcoma...
DMKN                  0.029   dermokine isoform 5 precursor 
DMKN                  0.029   dermokine isoform 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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