Guide to the Human Genome
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Name: LOC100128960 Sequence: fasta or formatted (340aa) NCBI GI: 169216514
Description:

PREDICTED: similar to paraneoplastic antigen MA2

Referenced in:

Additional Brain Proteins
Testes and Sperm

Other entries for this name:
alt prot [340aa] PREDICTED: similar to Putative paraneoplastic antigen-like protei...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.2         55           2
 C cysteine            1.8          6           1
 D aspartate           4.7         16           2
 E glutamate          13.2         45           4
 F phenylalanine       2.4          8           1
 G glycine            13.2         45           2
 H histidine           0.9          3           1
 I isoleucine          2.4          8           1
 K lysine              2.4          8           1
 L leucine             9.7         33           2
 M methionine          1.8          6           1
 N asparagine          1.8          6           1
 P proline             3.8         13           1
 Q glutamine           3.5         12           1
 R arginine            7.4         25           2
 S serine              4.4         15           1
 T threonine           2.4          8           1
 V valine              5.3         18           2
 W tryptophan          2.1          7           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to paraneoplastic antigen MA2 [H... 
LOC100128960          0.998   PREDICTED: similar to Putative paraneoplastic antig...
LOC649201             0.255   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC649201             0.255   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC649201             0.255   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC649238             0.232   PREDICTED: similar to hCG1645335 
LOC649238             0.232   PREDICTED: similar to hCG1645335 
LOC100287500          0.148   PREDICTED: hypothetical protein XP_002343900 
PNMA6A                0.148   paraneoplastic antigen like 6A 
LOC100287466          0.147   PREDICTED: hypothetical protein XP_002343899 
LOC100287428          0.147   PREDICTED: hypothetical protein XP_002343898 
PNMA3                 0.130   paraneoplastic cancer-testis-brain antigen 
PNMAL1                0.128   PNMA-like 1 isoform b 
PNMAL1                0.128   PNMA-like 1 isoform a 
PNMA2                 0.118   paraneoplastic antigen MA2 
PNMA5                 0.113   paraneoplastic antigen like 5 
PNMA5                 0.113   paraneoplastic antigen like 5 
PNMA5                 0.113   paraneoplastic antigen like 5 
PNMA1                 0.110   paraneoplastic antigen MA1 
PNMAL2                0.102   PNMA-like 2 
MOAP1                 0.101   modulator of apoptosis 1 
COL1A1                0.063   alpha 1 type I collagen preproprotein 
COL1A2                0.061   alpha 2 type I collagen 
COL11A1               0.060   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.060   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.060   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL6A1                0.060   collagen, type VI, alpha 1 precursor 
COL3A1                0.057   collagen type III alpha 1 preproprotein 
COL5A2                0.057   alpha 2 type V collagen preproprotein 
COL2A1                0.057   collagen, type II, alpha 1 isoform 1 precursor [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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