Guide to the Human Genome
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Name: OSBP Sequence: fasta or formatted (807aa) NCBI GI: 4505531
Description:

oxysterol binding protein

Referenced in:

Oxysterol-binding Protein Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         68           4
 C cysteine            1.9         15           2
 D aspartate           4.3         35           2
 E glutamate           8.7         70           2
 F phenylalanine       2.7         22           2
 G glycine             8.8         71           5
 H histidine           2.7         22           2
 I isoleucine          4.0         32           2
 K lysine              7.1         57           2
 L leucine             8.3         67           2
 M methionine          2.0         16           1
 N asparagine          4.6         37           1
 P proline             4.6         37           2
 Q glutamine           3.3         27           1
 R arginine            5.7         46           2
 S serine              7.4         60           2
 T threonine           6.3         51           3
 V valine              4.3         35           2
 W tryptophan          2.0         16           1
 Y tyrosine            2.9         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   oxysterol binding protein 
OSBP2                 0.568   oxysterol binding protein 2 isoform a 
OSBPL1A               0.188   oxysterol-binding protein-like 1A isoform B 
OSBPL3                0.175   oxysterol-binding protein-like protein 3 isoform d [...
OSBPL3                0.165   oxysterol-binding protein-like protein 3 isoform c [...
OSBPL3                0.165   oxysterol-binding protein-like protein 3 isoform b [...
OSBPL3                0.165   oxysterol-binding protein-like protein 3 isoform a [...
OSBPL1A               0.163   oxysterol-binding protein-like 1A isoform A 
OSBPL2                0.158   oxysterol-binding protein-like protein 2 isoform 2 [...
OSBPL2                0.158   oxysterol-binding protein-like protein 2 isoform 1 [H...
OSBPL6                0.150   oxysterol-binding protein-like protein 6 isoform a [...
OSBPL6                0.149   oxysterol-binding protein-like protein 6 isoform b [...
OSBPL7                0.143   oxysterol-binding protein-like protein 7 
OSBPL9                0.055   oxysterol binding protein-like 9 isoform e 
OSBPL9                0.055   oxysterol binding protein-like 9 isoform d 
OSBPL11               0.055   oxysterol binding protein-like 11 
OSBPL9                0.055   oxysterol binding protein-like 9 isoform f 
OSBPL10               0.052   oxysterol-binding protein-like protein 10 
OSBPL5                0.047   oxysterol-binding protein-like protein 5 isoform a [...
OSBPL5                0.047   oxysterol-binding protein-like protein 5 isoform b ...
OSBPL5                0.047   oxysterol-binding protein-like protein 5 isoform b [...
OSBPL8                0.046   oxysterol-binding protein-like protein 8 isoform b [...
OSBPL8                0.046   oxysterol-binding protein-like protein 8 isoform a [...
PLEKHA3               0.044   pleckstrin homology domain containing, family A (pho...
PLEKHA8               0.039   pleckstrin homology domain containing, family A (pho...
COL4A3BP              0.038   alpha 3 type IV collagen binding protein isoform 3 ...
COL4A3BP              0.036   alpha 3 type IV collagen binding protein isoform 2 [...
COL4A3BP              0.036   alpha 3 type IV collagen binding protein isoform 1 [H...
OSBPL9                0.024   oxysterol binding protein-like 9 isoform c 
OSBPL9                0.024   oxysterol binding protein-like 9 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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